Search results for "Arabidopsis Proteins"

showing 10 items of 86 documents

Interactions between abscisic acid and plastidial glycolysis in Arabidopsis

2011

[EN] The phytohormone abscisic acid (ABA) controls the development of plants and plays a crucial role in their response to adverse environmental conditions like salt and water stress.1-3 Complex interactions between ABA and sugar signal transduction pathways have been shown. However, the role played by glycolysis in these interactions is not known. In the associated study,4 we investigated the interactions between plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase (GAPCp) and ABA signal transduction in Arabidopsis. We followed physiological, genetic and genomic approaches to understand the processes and mechanisms underlying the ABAglycolysis interactions. Our results indicated …

PlastidArabidopsisPlant Sciencechemistry.chemical_compoundAmino acid homeostasisArabidopsisTranscriptional regulationBIOQUIMICA Y BIOLOGIA MOLECULARHomeostasisPlastidsAmino AcidsTranscription factorAbscisic acidGlyceraldehyde 3-phosphate dehydrogenasebiologyArabidopsis Proteinsorganic chemicalsfungiGlyceraldehyde-3-Phosphate Dehydrogenasesfood and beveragesbiology.organism_classificationArticle AddendumGAPCpSugar-ABA interactionschemistryBiochemistryMutationABA signal transductionbiology.proteinCarbohydrate MetabolismGlyceraldehyde- 3-phosphate dehydrogenaseSignal transductionSugar signal transductionGlycolysisAbscisic AcidSignal Transduction
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The cytosolic Arabidopsis thaliana cysteine desulfurase ABA3 delivers sulfur to the sulfurtransferase STR18

2020

ABSTRACTThe biosynthesis of many sulfur-containing molecules depends on cysteine as a sulfur source. Cysteine desulfurase (CD) and rhodanese (Rhd) domain-containing protein families participate in the trafficking of sulfur for various metabolic pathways in bacteria and human, but their connection is not yet described in plants. The existence of natural chimeric proteins, however, containing both CD and Rhd domains in specific bacterial genera suggests a general interaction between both proteins. We report here the biochemical relationships between two cytosolic proteins from Arabidopsis thaliana, a Rhd domain containing protein, the sulfurtransferase 18 (STR18), and a CD isoform referred to…

Protein familyArabidopsisSulfurtransferaseRhodaneseBiochemistry03 medical and health scienceschemistry.chemical_compoundCytosolProtein DomainsArabidopsis thalianaCysteineMolecular Biology030304 developmental biology0303 health sciencesbiologyArabidopsis ProteinsCysteine desulfurase030302 biochemistry & molecular biologyCell Biologybiology.organism_classificationFusion proteinThiosulfate SulfurtransferaseCarbon-Sulfur LyasesBiochemistrychemistrySulfurtransferasesMolybdenum cofactorSulfurCysteine
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Identification of Trans-Golgi Network Proteins in Arabidopsis thaliana Root Tissue

2014

Knowledge of protein subcellular localization assists in the elucidation of protein function and understanding of different biological mechanisms that occur at discrete subcellular niches. Organelle-centric proteomics enables localization of thousands of proteins simultaneously. Although such techniques have successfully allowed organelle protein catalogues to be achieved, they rely on the purification or significant enrichment of the organelle of interest, which is not achievable for many organelles. Incomplete separation of organelles leads to false discoveries, with erroneous assignments. Proteomics methods that measure the distribution patterns of specific organelle markers along densit…

ProteomicsArabidopsis thalianaArabidopsisorganelle proteomicsProteomicsPlant RootsBiochemistryArticlesymbols.namesakeArtificial IntelligenceTandem Mass SpectrometryArabidopsisOrganelleArabidopsis thalianaChromatography Reverse-PhaseimmunoisolationbiologyArabidopsis Proteinstrans-Golgi networkGeneral ChemistryGolgi apparatusbiology.organism_classificationSubcellular localizationLOPITCell biologyIsobaric labelingphenoDiscomachine learningsymbolsIdentification (biology)Journal of Proteome Research
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Plant protein phosphorylation monitored by capillary liquid chromatography–element mass spectrometry

2007

Abstract Many essential cellular functions such as growth rate, motility, and metabolic activity are linked to reversible protein phosphorylation, since they are controlled by signaling cascades based mainly on phosphorylation/dephosphorylation events. Quantification of global or site-specific protein phosphorylation is not straightforward with standard proteomic techniques. The coupling of capillary liquid chromatography (μLC) with ICP-MS (inductively coupled plasma-mass spectrometry) is a method which allows a quantitative screening of protein extracts for their phosphorus and sulfur content, and thus provides access to the protein phosphorylation degree. In extension of a recent pilot st…

ProteomicsPhosphataseArabidopsisProtozoan ProteinsBiophysicsChlamydomonas reinhardtiimacromolecular substancesBiologyProteomicsBiochemistryMass SpectrometryDephosphorylationMiceAnimalsProtein phosphorylationPhosphorylationMolecular BiologyCells CulturedPlant ProteinsChromatographyArabidopsis ProteinsPhosphorusCell BiologyPhosphoproteinsbiology.organism_classificationPeptide FragmentsBiochemistryPlant proteinPhosphoproteinPhosphorylationChlamydomonas reinhardtiiSulfurChromatography LiquidBiochemical and Biophysical Research Communications
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Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.

2014

The p24 proteins belong to a family of type I membrane proteins which cycle between the endoplasmic reticulum (ER) and Golgi via coat protein I (COPI) and COPII vesicles. Current nomenclature classifies them into four subfamilies, although plant p24 proteins belong to either the p24β or the p24δ subfamilies. Here, we show that Arabidopsis p24δ5/δ9 and HDEL ligands shift the steady-state distribution of the K/HDEL receptor ERD2 from the Golgi to the ER. We also show that p24δ5/δ9 interact directly with ERD2. This interaction requires the Golgi dynamics (GOLD) domain in p24δ5 and is much higher at acidic than at neutral pH, consistent with both proteins interacting at the cis-Golgi. In additi…

Receptors PeptideArabidopsisGolgi ApparatusPlant ScienceBiologyEndoplasmic ReticulumCoat Protein Complex Isymbols.namesakeGeneticsAnimalsSecretionCOPIIVesicular-tubular clusterArabidopsis ProteinsEndoplasmic reticulumMembrane ProteinsCell BiologyCOPIGolgi apparatusCell biologyTransport proteinDNA-Binding ProteinsProtein TransportMembrane proteinsymbolsTranscription FactorsThe Plant journal : for cell and molecular biology
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In vivo Trafficking and Localization of p24 Proteins in Plant Cells

2008

p24 proteins constitute a family of putative cargo receptors that traffic in the early secretory pathway. p24 proteins can be divided into four subfamilies (p23, p24, p25 and p26) by sequence homology. In contrast to mammals and yeast, most plant p24 proteins contain in their cytosolic C-terminus both a dilysine motif in the -3, -4 position and a diaromatic motif in the -7, -8 position. We have previously shown that the cytosolic tail of Arabidopsis p24 proteins has the ability to interact with ARF1 and coatomer (through the dilysine motif) and with COPII subunits (through the diaromatic motif). Here, we establish the localization and trafficking properties of an Arabidopsis thaliana p24 pr…

Recombinant Fusion ProteinsMolecular Sequence DataArabidopsisGolgi ApparatusVacuoleProtein Sorting SignalsBiologyEndoplasmic ReticulumBiochemistrysymbols.namesakeStructural BiologyArabidopsisGeneticsAnimalsHumansProtein IsoformsAmino Acid SequenceMolecular BiologyCOPIISecretory pathwayArabidopsis ProteinsLysineEndoplasmic reticulumMembrane ProteinsCell BiologyCOPIGolgi apparatusbiology.organism_classificationActinsCell biologyDNA-Binding ProteinsProtein TransportBiochemistryCoatomerVacuolessymbolsCOP-Coated VesiclesCarrier ProteinsTranscription FactorsTraffic
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A genetic approach reveals different modes of action of prefoldins

2021

17 p.-7 fig.

Regular IssueAcademicSubjects/SCI01280PhysiologyProtein subunitMutantArabidopsisPlant ScienceChaperonin03 medical and health sciences0302 clinical medicineArabidopsisGeneticsBIOQUIMICA Y BIOLOGIA MOLECULARArabidopsis thalianaTranscription factorActinResearch Articles030304 developmental biology0303 health sciencesAcademicSubjects/SCI01270biologyErrataArabidopsis ProteinsAcademicSubjects/SCI02288AcademicSubjects/SCI02287AcademicSubjects/SCI02286Genes Development and EvolutionPrefoldin complexbiology.organism_classificationCell biologyGENETICA030217 neurology & neurosurgeryMolecular ChaperonesTranscription Factors
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ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and seven WD40 repeats

2000

We describe a new subfamily of WD repeat proteins characterised by the presence of a C3H zinc finger at the N-terminal part of the protein associated with seven WD40 repeats. We have identified four members of this subfamily in Arabidopsis thaliana, one of them with associated expressed sequence tags (ESTs). We have also identified homologous ESTs in rice, cotton, maize, poplar, pine tree and the ice plant. We do not observe animal homologues, suggesting that this subfamily could be specific for plants. Our data suggest an important role for these proteins. Based on the high sequence conservation within the conserved domains, we suggest that these proteins could have a regulatory function.

Repetitive Sequences Amino AcidDNA ComplementarySubfamilyDNA PlantMolecular Sequence DataArabidopsisSequence alignmentBiologyEvolution MolecularWD40 repeatGeneticsProtein IsoformsArabidopsis thalianaAmino Acid SequencePeptide sequencePhylogenyPlant ProteinsExpressed Sequence TagsGeneticsZinc fingerExpressed sequence tagProtein subfamilySequence Homology Amino AcidArabidopsis Proteinsfungifood and beveragesZinc FingersSequence Analysis DNAGeneral Medicinebiology.organism_classificationSequence AlignmentGene
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Homeostatic control of polyamine levels under long-term salt stress in Arabidopsis

2011

Salt stress has been frequently studied in its first osmotic phase. Very often, data regarding the second ionic phase is missing. It has also been suggested that Putrescine or/and Spermine could be responsible for salt resistance. In order to test this hypothesis under long-term salt stress, we obtained Arabidopsis thaliana transgenic plants harboring pRD29A::oatADC or pRD29A::GUS construction. Although Putrescine was the only polyamine significantly increased after salt acclimation in pRD29A::oatADC transgenic lines, this rendered in no advantage to this kind of stress. The higher Spermine levels found in WT and transgenic lines when compared to control conditions along with no increment o…

SalinityCarboxy-lyasesAvenaCarboxy-LyasesAcclimatizationArabidopsisSperminePlant ScienceAcclimatizationchemistry.chemical_compoundStress PhysiologicalArabidopsisPolyaminesHomeostasisArabidopsis thalianaPromoter Regions GeneticAbscisic acidbiologyArabidopsis ProteinsPlants Genetically Modifiedbiology.organism_classificationchemistryBiochemistryPutrescinePolyamineResearch PaperAbscisic AcidSignal TransductionPlant Signaling & Behavior
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AtPGAP1 functions as a GPI inositol-deacylase required for efficient transport of GPI-anchored proteins

2021

Abstract Glycosylphosphatidylinositol (GPI)-anchored proteins (GPI-APs) play an important role in a variety of plant biological processes including growth, stress response, morphogenesis, signaling, and cell wall biosynthesis. The GPI anchor contains a lipid-linked glycan backbone that is synthesized in the endoplasmic reticulum (ER) where it is subsequently transferred to the C-terminus of proteins containing a GPI signal peptide by a GPI transamidase. Once the GPI anchor is attached to the protein, the glycan and lipid moieties are remodeled. In mammals and yeast, this remodeling is required for GPI-APs to be included in Coat Protein II-coated vesicles for their ER export and subsequent t…

Signal peptideGlycanGenotypePhysiologyGlycosylphosphatidylinositolsPlant ScienceGenes Plantchemistry.chemical_compoundGene Expression Regulation PlantArabidopsisGeneticsArabidopsis thalianaInositolbiologyChemistryArabidopsis ProteinsEndoplasmic reticulumGenetic VariationMembrane Proteinsbiology.organism_classificationYeastPhosphoric Monoester HydrolasesCell biologyFocus Issue on Transport and Signalingcarbohydrates (lipids)Protein Transportbiology.proteinlipids (amino acids peptides and proteins)Function (biology)
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