Search results for "Atlantic cod"
showing 10 items of 56 documents
Demographic effects of full vs. partial protection from harvesting: inference from an empirical before-after control-impact study on Atlantic cod
2015
Summary In recent years, marine protected areas (MPAs) excluding all or some fishing activities have become widely applied as a tool to rebuild marine ecosystems and fisheries, but still, our knowledge of the effects of MPAs on the demography of harvested populations remains scarce, especially in cases where partly protected areas are still supporting some fishing activities. Here, we investigated the influence of partial protection – excluding fixed gears such as gillnets and traps but still allowing a hook and line fishery – on the demography of Atlantic cod Gadus morhua along the Norwegian Skagerrak coast. To do so, we applied novel multi-event models to a 9-year data set containing both…
Catch-and-release of Atlantic cod (Gadus morhua): post-release behaviour of acoustically pretagged fish in a natural marine environment
2014
Studying the sublethal effects of catch-and-release (C&R) is challenging, as there are several potential sources of bias. For example, if behavioural alterations immediately after the release event are to be studied, separation of tagging effects from actual C&R effects is required, which is a challenge in the wild, particularly in marine environments. To investigate the effects of C&R on Atlantic cod (Gadus morhua) in their natural environment, 80 cod were caught in fyke nets, fitted with acoustic transmitters, and released. After recovery from tagging and handling for at least 14 days, nine individuals were recaptured and released at least once during experimental angling, fo…
Local recruitment of Atlantic cod and putative source spawning areas in a coastal seascape
2021
Abstract Increased knowledge on connectivity is crucial to our understanding of the population dynamics, genetic structure, and biogeography of many coastal species. In coastal marine populations, the main factor for structuring is thought to be the degree of isolation and confinement, limiting genetic exchange between populations. However, many offshore populations use the coastal areas as nursery grounds, but venture back to natal spawning grounds as adults. Therefore, increased knowledge on the connectivity between coastal and offshore populations is crucial to ensure correct assessment of coastal living resources. Here, we combine genetic assignment data of Atlantic cod recruits sampled…
Impact of salmon farming on Atlantic cod spatio-temporal reproductive dynamics
2021
Salmon farming in marine net pens is a major activity in many temperate regions. This industry may affect coastal ecosystems in several ways, such as with waste pollution and parasite spillover. Less is known about the extent to which salmon farming disrupts the use of inshore spawning grounds by wild fish, such as the Atlantic cod Gadus morhua. Acoustic telemetry was therefore used to explore cod space use during the spawning season in a coastal region in mid-Norway with multiple salmon farms. Acoustic receivers were placed in clusters at 5 known cod spawning grounds and 6 nearby salmon farms. Data from 481 adult cod caught at the spawning grounds during 2017-2019 and equipped with acousti…
Infection dynamics of two renal myxozoans in hatchery reared fry and juvenile Atlantic cod Gadus morhua L.
2010
SUMMARYIn order to study the infection dynamics of 2 renal myxozoans, Zschokkella hildae Auerbach, 1910 and Gadimyxa atlanticaKøie, Karlsbakk and Nylund, 2007 in cultured Atlantic cod, Gadus morhua L. aged 3–19 months, a specific single-round PCR assay and a double-label in situ hybridization protocol were developed. The results demonstrated that the 2 myxozoans show spatial separation of their development with regard to spore formation inside the renal tubules versus the collecting ducts and ureters, as well as temporal separation with Z. hildae proliferating and developing spores only once the G. atlantica infection decreases, despite the presence of both myxozoans in the smallest fry stu…
The new era of genome sequencing using high-throughput sequencing technology: generation of the first version of the Atlantic cod genome
2016
Abstract The genome of Atlantic cod (Gadus morhua L.) published in 2011 was the first example of a teleost genome obtained using a pure high-throughput sequencing (HTS) technology strategy, and the first large vertebrate genome generated by exclusively using Roche/454 sequencing technology. At the start of the sequencing project in 2009, two HTS technologies were available, the Roche/454 and Illumina technologies. Because of the longer read length of the Roche/454 technology and a wider range of suitable software utilizing those data at the time, we chose to use this technology for the first version of the Atlantic cod genome. In this chapter, we describe the process leading to the assembly…
Diclidophora merlangi (Monogenea: Diclidophoridae) on Atlantic cod, Gadus morhua.
2006
Diclidophora merlangi (Kuhn, in Nordmann, 1832), as species specific to whiting, Merlangius merlangus (Linnaeus, 1758), is reported and described for the first time on the gills of Atlantic cod Gadus morhua (Linnaeus, 1758). Of the about 1,200 cod examined in this article, only 2 specimens of D. merlangi occurred on 2 fish, suggesting that they represented accidental infections. The 2 specimens showed specific traits of D. merlangi, but their size was considerably smaller than that of D. merlangi on whiting. Principal-component analyses showed that the morphology of the specimens on cod was more similar to that of D. merlangi than those of other congeneric species from the North Atlantic, a…
Influence of larval transport and temperature on recruitment dynamics of North Sea cod (Gadus morhua) across spatial scales of observation
2020
The survival of fish eggs and larvae, and therefore recruitment success, can be critically affected by transport in ocean currents. Combining a model of early‐life stage dispersal with statistical stock–recruitment models, we investigated the role of larval transport for recruitment variability across spatial scales for the population complex of North Sea cod (Gadus morhua). By using a coupled physical–biological model, we estimated the egg and larval transport over a 44‐year period. The oceanographic component of the model, capable of capturing the interannual variability of temperature and ocean current patterns, was coupled to the biological component, an individual‐based model (IBM) tha…
Inferring genetic connectivity in real populations, exemplified by coastal and oceanic atlantic cod
2018
Significance Estimates of migration are important for understanding the dynamics of natural populations. A statistic known as FST is often used to measure levels of genetic differentiation among natural populations. Equations that translate FST into estimates of migration are based on “ideal” populations, which are subject to many simplifying assumptions compared with real populations. Therefore, theoretical estimates of migration might not be realistic. We modeled populations of Atlantic cod in the North Sea and the adjacent Skagerrak region to compare how migration is related to the complexities of real populations, and how actual migration compares with predictions based on theory. Resul…
Genomic characterization of the Atlantic cod sex-locus
2016
AbstractA variety of sex determination mechanisms can be observed in evolutionary divergent teleosts. Sex determination is genetic in Atlantic cod (Gadus morhua), however the genomic location or size of its sex-locus is unknown. Here, we characterize the sex-locus of Atlantic cod using whole genome sequence (WGS) data of 227 wild-caught specimens. Analyzing more than 55 million polymorphic loci, we identify 166 loci that are associated with sex. These loci are located in six distinct regions on five different linkage groups (LG) in the genome. The largest of these regions, an approximately 55 Kb region on LG11, contains the majority of genotypes that segregate closely according to a XX-XY s…