Search results for "Base"

showing 10 items of 8362 documents

Assessing sampling coverage of species distribution in biodiversity databases

2019

Abstract Aim Biodiversity databases are valuable resources for understanding plant species distributions and dynamics, but they may insufficiently represent the actual geographic distribution and climatic niches of species. Here we propose and test a method to assess sampling coverage of species distribution in biodiversity databases in geographic and climatic space. Location Europe. Methods Using a test selection of 808,794 vegetation plots from the European Vegetation Archive (EVA), we assessed the sampling coverage of 564 European vascular plant species across both their geographic ranges and realized climatic niches. Range maps from the Chorological Database Halle (CDH) were used as bac…

0106 biological sciencesChorological Database Halle (CDH)Range (biology)multi-scale[SDE.MCG]Environmental Sciences/Global Changesvegetation-plot databasesSpecies distributionPlant Science[SDV.BID]Life Sciences [q-bio]/Biodiversitycomputer.software_genre010603 evolutionary biology01 natural sciencesmacro-ecology333: Bodenwirtschaft und Ressourcen577: ÖkologieRealized niche widthMacroecologyEcological niche[SDV.EE]Life Sciences [q-bio]/Ecology environmentspatial scaleEcologyDatabaseNull modelvegetation plot databasesclimatic nichevascular plantSampling (statistics)species rangeVegetation15. Life on landDynamic Match Coefficient (DMC)sampling biasGeographyrealized niche1181 Ecology evolutionary biologymacroecology[SDE.BE]Environmental Sciences/Biodiversity and Ecologycomputer010606 plant biology & botanyEuropean Vegetation Archive (EVA)
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Gibberellic acid in Citrus spp. flowering and fruiting: A systematic review

2019

[EN] Background In Citrus spp., gibberellic acid (GA) has been proposed to improve different processes related to crop cycle and yield. Accordingly, many studies have been published about how GA affects flowering and fruiting. Nevertheless, some such evidence is contradictory and the use of GA applications by farmers are still confusing and lack the expected results. Purpose This review aims to collate, present, analyze and synthesize the most relevant empirical evidence to answer the following questions: (i) how does gibberellic acid act on flowering and fruiting of citrus trees?; (ii) why is all this knowledge sometimes not correctly used by farmers to solve yield problems relating to flo…

0106 biological sciencesCitrusLeavesPlant Science01 natural sciencesBiochemistrychemistry.chemical_compoundDatabase and Informatics MethodsPlant Growth RegulatorsPlant HormonesDatabase SearchingMultidisciplinaryPlant BiochemistryOrganic CompoundsPlant AnatomyQREukaryota04 agricultural and veterinary sciencesPlantsCrop cycleHorticultureChemistryPhysical SciencesMedicineGibberellinCitrus × sinensisResearch ArticleScienceBOTANICACarbohydratesFlowersBiologyResearch and Analysis MethodsOrangesFruitsFruit setAbscissionGibberellic acidOrganic ChemistryOrganismsChemical CompoundsBiology and Life SciencesHormonesGibberellinschemistryFruit040103 agronomy & agriculture0401 agriculture forestry and fisheries010606 plant biology & botanyField conditionsPLoS ONE
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Conservation and people: Towards an ethical code of conduct for the use of camera traps in wildlife research

2020

International audience; Abstract 1. Camera trapping is a widely employed tool in wildlife research, used to estimate animal abundances, understand animal movement, assess species richness and understand animal behaviour. In addition to images of wild animals, research cameras often record human images, inadvertently capturing behaviours ranging from innocuous actions to potentially serious crimes. 2. With the increasing use of camera traps, there is an urgent need to reflect on how researchers should deal with human images caught on cameras. On the one hand, it is important to respect the privacy of individuals caught on cameras, while, on the other hand, there is a larger public duty to re…

0106 biological sciencesCode of conductmedia_common.quotation_subjectPARTNERS principles for community‐based conservationInternet privacyComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONWildlifeprivacyhuman rights010603 evolutionary biology01 natural sciencesEcology and Environment[SHS]Humanities and Social Sciencessnow leopardGE1-35014. Life underwaterlawQH540-549.5Ethical codemedia_commonEcologyHuman rightscamera trapcode of conductbusiness.industry010604 marine biology & hydrobiology15. Life on landethicsEnvironmental sciencesGeographySnow leopardCamera trapPARTNERS principles for community-based conservationbusinessEcological Solutions and Evidence
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Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009–30 November 2009.

2010

5 pages; International audience; This article documents the addition of 411 microsatellite marker loci and 15 pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Acanthopagrus schlegeli, Anopheles lesteri, Aspergillus clavatus, Aspergillus flavus, Aspergillus fumigatus, Aspergillus oryzae, Aspergillus terreus, Branchiostoma japonicum, Branchiostoma belcheri, Colias behrii, Coryphopterus personatus, Cynogolssus semilaevis, Cynoglossus semilaevis, Dendrobium officinale, Dendrobium officinale, Dysoxylum malabaricum, Metrioptera roeselii, Myrmeciza exsul, Ochotona thibetana, Neosartorya fisc…

0106 biological sciencesColias interiorcomputer.software_genre010603 evolutionary biology01 natural sciences03 medical and health sciencesfoodBotanyGeneticsEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciences[SDV.GEN]Life Sciences [q-bio]/GeneticsbiologyDatabaseSalvia officinalisbiology.organism_classificationfood.foodDendrobium devonianumDendrobium loddigesiiNothofagus obliquaSula nebouxiiColias eurytheme[ SDV.GEN ] Life Sciences [q-bio]/GeneticsAspergillus clavatuscomputerBiotechnology
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Taxonomy 2.0: computer-aided identification tools to assist Antarctic biologists in the field and in the laboratory

2020

Species inventories are essential to the implementation of conservation policies to mitigate biodiversity loss and maintain ecosystem services and their value to the society. This is particularly topical with respect to climate change and direct anthropogenic effects on Antarctic biodiversity, with the identification of the most at-risk taxa and geographical areas becoming a priority. Identification tools are often neglected and considered helpful only for taxonomists. However, the development of new online information technologies and computer-aided identification tools provides an opportunity to promote them to a wider audience, especially considering the emerging generation of scientists…

0106 biological sciencesComputer science[SDV]Life Sciences [q-bio]BiodiversityEvolution des espècesOceanography010603 evolutionary biology01 natural sciencesEcosystem servicesDatabaseKnowledge baseBiodiversity conservationOcéanographie physique et chimique14. Life underwaterGéologieComputingMilieux_MISCELLANEOUSEcology Evolution Behavior and SystematicsXper3Taxonomic keyEcologiebiologybusiness.industry010604 marine biology & hydrobiologyOdontasteridaeInformation technologyGeologyField guides15. Life on landbiology.organism_classificationData scienceKnowledge base13. Climate action[SDE]Environmental SciencesManagement systemComputer-aidedbusinessSoftwareAntarctic Science
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Benchmark database for fine-grained image classification of benthic macroinvertebrates

2018

Managing the water quality of freshwaters is a crucial task worldwide. One of the most used methods to biomonitor water quality is to sample benthic macroinvertebrate communities, in particular to examine the presence and proportion of certain species. This paper presents a benchmark database for automatic visual classification methods to evaluate their ability for distinguishing visually similar categories of aquatic macroinvertebrate taxa. We make publicly available a new database, containing 64 types of freshwater macroinvertebrates, ranging in number of images per category from 7 to 577. The database is divided into three datasets, varying in number of categories (64, 29, and 9 categori…

0106 biological sciencesComputer scienceta1172Sample (statistics)monitorointi02 engineering and technologyneuroverkot01 natural sciencesConvolutional neural network0202 electrical engineering electronic engineering information engineeringkonenäköfine-grained classification14. Life underwaterFine-grained classificationInvertebrateta113ta112Contextual image classificationbusiness.industry010604 marine biology & hydrobiologyDeep learningConvolutional Neural NetworksBenchmark databasedeep learningPattern recognitionDeep learningselkärangattomatvedenlaatu6. Clean waterkoneoppiminenBenthic zoneBenthic macroinvertebratesbiomonitoringSignal ProcessingBiomonitoringta1181lajinmääritys020201 artificial intelligence & image processingComputer Vision and Pattern RecognitionArtificial intelligenceWater qualitybusinessbenthic macroinvertebrates
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Leaf-Level Spectral Fluorescence Measurements : Comparing Methodologies for Broadleaves and Needles

2019

Successful measurements of chlorophyll fluorescence (ChlF) spectral properties (typically in the wavelength range of 650–850 nm) across plant species, environmental conditions, and stress levels are a first step towards establishing a quantitative link between solar-induced chlorophyll fluorescence (SIF), which can only be measured at discrete ChlF spectral bands, and photosynthetic functionality. Despite its importance and significance, the various methodologies for the estimation of leaf-level ChlF spectral properties have not yet been compared, especially when applied to leaves with complex morphology, such as needles. Here we present, to the best of our knowledge, a first comparison of …

0106 biological sciencesCorrection methodMaterials science010504 meteorology & atmospheric sciencesSciencesun-induced fluorescenceAnalytical chemistryleaf morphology01 natural sciencesSpectral lineFluoWatlingonberryLEAVESChlorophyll fluorescence0105 earth and related environmental sciences4112 Forestryphotosynthesischlorophyll fluorescencesilver birchQSpectral propertiesSpectral bandsOPTICAL-PROPERTIESA FLUORESCENCECANOPY-LEVELFluorescencebaseline correctionRATIO F690/F730Integrating sphereLIGHTPHOTOSYSTEM-IPlant speciesScots pineINDUCED CHLOROPHYLL FLUORESCENCEMINIMIZING MEASUREMENT UNCERTAINTIESREVISED MEASUREMENT METHODOLOGYGeneral Earth and Planetary Sciencesbaseline correction; chlorophyll fluorescence; FluoWat; leaf morphology; lingonberry; photosynthesis; Scots pine; silver birch; sun-induced fluorescence010606 plant biology & botany
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Ethnobotany of dye plants in Southern Italy, Mediterranean Basin: floristic catalog and two centuries of analysis of traditional botanical knowledge …

2020

Abstract Background Since ancient times, man has learned to use plants to obtain natural dyes, but this traditional botanical knowledge (TBK) is eroding. In the late, during, and the early 1800s, there was an increase in research related to dye species, and this allowed the development of industry and economy in rural contexts of Southern Italy. Today, dyes are mainly obtained from synthetic products, and this leads to risks for human health related to pollution. Methods Starting from the literature, three catalogs of the dyeing species (plants, algae, fungi, and lichens) used in the Mediterranean Basin and mainly in Southern Italy have been created. Percentages of parts used and colors ext…

0106 biological sciencesCultural StudiesFloraHealth (social science)LichensEthnobotany01 natural sciencesMediterranean BasinFloristicsEthnobotany Dye plants Mediterranean Basin DatabaseDatabaseHuman healthAlgaelcsh:BotanyHumansLichenColoring AgentsbiologyAgroforestrySettore BIO/02 - Botanica SistematicaResearchFungilcsh:Other systems of medicinePlantsbiology.organism_classificationlcsh:RZ201-9990104 chemical scienceslcsh:QK1-989010404 medicinal & biomolecular chemistryGeographyKnowledgeComplementary and alternative medicineDye plantsItalyEthnobotanySettore BIO/03 - Botanica Ambientale E ApplicataPlant speciesMediterranean BasinGeneral Agricultural and Biological Sciences010606 plant biology & botanyJournal of Ethnobiology and Ethnomedicine
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Subcellular localization and purification of a p-hydroxyphenylpyruvate dioxygenase from cultured carrot cells and characterization of the correspondi…

1997

p-Hydroxyphenylpyruvate dioxygenase catalyses the transformation of p-hydroxyphenylpyruvate into homogentisate. In plants this enzyme has a crucial role because homogentisate is the aromatic precursor of all prenylquinones. Furthermore this enzyme was recently identified as the molecular target for new families of potent herbicides. In this study we examine precisely the localization of p-hydroxyphenylpyruvate dioxygenase activity within carrot cells. Our results provide evidence that, in cultured carrot cells, p-hydroxyphenylpyruvate dioxygenase is associated with the cytosol. Purification and SDS/PAGE analysis of this enzyme revealed that its activity is associated with a polypeptide of 4…

0106 biological sciencesDNA ComplementaryMolecular Sequence DataBiology4-Hydroxyphenylpyruvate Dioxygenase01 natural sciencesBiochemistry03 medical and health sciencesDioxygenaseComplementary DNA[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular Biology[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyAmino Acid SequenceCloning MolecularMolecular BiologyPeptide sequenceCells CulturedComputingMilieux_MISCELLANEOUS030304 developmental biologyHomogentisate 12-dioxygenase0303 health sciencesBase SequenceSequence Homology Amino AcidMolecular massDioxygenase activityNucleic acid sequenceCell BiologyMolecular biologyDaucus carotaBiochemistryElectrophoresis Polyacrylamide Gel4-Hydroxyphenylpyruvate dioxygenaseResearch ArticleChromatography LiquidSubcellular Fractions010606 plant biology & botany
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The dominance of the herbicide resistance cost in several Arabidopsis thaliana mutant lines

2004

Abstract Resistance evolution depends upon the balance between advantage and disadvantage (cost) conferred in treated and untreated areas. By analyzing morphological characters and simple fitness components, the cost associated with each of eight herbicide resistance alleles (acetolactate synthase, cellulose synthase, and auxin-induced target genes) was studied in the model plant Arabidopsis thaliana. The use of allele-specific PCR to discriminate between heterozygous and homozygous plants was used to provide insights into the dominance of the resistance cost, a parameter rarely described. Morphological characters appear more sensitive than fitness (seed production) because 6 vs. 4 differen…

0106 biological sciencesDNA PlantGenotypeArabidopsisDrug ResistanceDrug resistance[SDV.GEN] Life Sciences [q-bio]/GeneticsGenes Plant01 natural sciences03 medical and health sciencesGene FrequencyArabidopsisGenotypeGeneticsAlleleGeneCrosses GeneticComputingMilieux_MISCELLANEOUSGenes Dominant030304 developmental biologyDominance (genetics)Genetics[SDV.GEN]Life Sciences [q-bio]/Genetics0303 health sciencesAcetolactate synthaseBase SequencebiologyHerbicidesbiology.organism_classificationPhenotypeMutationbiology.proteinUnderdominanceResearch Article010606 plant biology & botany
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