Search results for "Base"
showing 10 items of 8362 documents
Detecting Mild Water Stress in Olive with Multiple Plant-Based Continuous Sensors.
2021
A comprehensive characterization of water stress is needed for the development of automated irrigation protocols aiming to increase olive orchard environmental and economical sustainability. The main aim of this study is to determine whether a combination of continuous leaf turgor, fruit growth, and sap flow responses improves the detection of mild water stress in two olive cultivars characterized by different responses to water stress. The sensitivity of the tested indicators to mild stress depended on the main mechanisms that each cultivar uses to cope with water deficit. One cultivar showed pronounced day to day changes in leaf turgor and fruit relative growth rate in response to water w…
The Eurasian Modern Pollen Database (EMPD), version 2
2020
The Eurasian (née European) Modern Pollen Database (EMPD) was established in 2013 to provide a public database of high-quality modern pollen surface samples to help support studies of past climate, land cover, and land use using fossil pollen. The EMPD is part of, and complementary to, the European Pollen Database (EPD) which contains data on fossil pollen found in Late Quaternary sedimentary archives throughout the Eurasian region. The EPD is in turn part of the rapidly growing Neotoma database, which is now the primary home for global palaeoecological data. This paper describes version 2 of the EMPD in which the number of samples held in the database has been increased by 60% from 4826 to…
Dynamics of PHA-induced immune response and plasma carotenoids in birds: should we have a closer look?
2009
SUMMARY Allocation trade-offs of limited resources are thought to ensure the honesty of sexual signals and are often studied using controlled immune challenges. One such trade-off between immunity and ornaments is that involving carotenoids. Phytohemagglutinin (PHA)-induced immune response is a widely used immune challenge, yet more details on the underlying physiological mechanisms and potential costs are needed. We investigated the temporal dynamics of PHA-induced immune response and associated changes in blood carotenoids, body mass and a carotenoid-based coloured signal. We found variation in individual response patterns to PHA after peak swelling was reached, with birds showing either …
The efficacy of whole human genome capture on ancient dental calculus and dentin
2019
Objectives Dental calculus is among the richest known sources of ancient DNA in the archaeological record. Although most DNA within calculus is microbial, it has been shown to contain sufficient human DNA for the targeted retrieval of whole mitochondrial genomes. Here, we explore whether calculus is also a viable substrate for whole human genome recovery using targeted enrichment techniques. Materials and methods Total DNA extracted from 24 paired archaeological human dentin and calculus samples was subjected to whole human genome enrichment using in-solution hybridization capture and high-throughput sequencing. Results Total DNA from calculus exceeded that of dentin in all cases, and altho…
Multi-zone marine protected areas: Assessment of ecosystem and fisheries benefits using multiple ecosystem models
2020
12 pages, 8 figures, 3 tables, 1 appendix supplementary data https://doi.org/10.1016/j.ocecoaman.2020.105232
Measuring the effects of temperature rise on Mediterranean shellfish aquaculture
2018
Abstract Shellfish aquaculture represents a worldwide valuable segment of the aquaculture market, spreading along the Mediterranean coasts, and is sensitive to the still unforeseen, poorly-known effects of climate change. Threats due to temperature rise can threaten the deployment and development of this sector, up until now recognised as the best candidate to mitigate the effects of fishery overexploitation. Here, we investigate the effects of temperature increase on the model species, Mytilus galloprovincialis, measuring outcomes from valve fragility (thickness) and condition index. Evidence of a reduction in the thickness of valves and the modulation condition of the mussels along with t…
Circummed pine forest database: An electronic archive for mediterranean and submediterranean pine forest vegetation data
2019
Large thematic databases of vegetation plots are increasingly needed for vegetation studies and biodiversity research. In this paper, we present the CircumMed Pine Forest Database (GIVD ID: EU-00-026), which in November 2018, comprised records from 6317 pine-dominated vegetation plots (relevés) and associated vegetation types from 20 countries of the Mediterranean Basin, Near East and Crimea. These vegetation plots were collected through a detailed literature search for plots not previously included in the European Vegetation Archive (EVA), in order to fill geographic gaps in data coverage. The database comprises Mediterranean (including Oromediterranean) pine-forest vegetation plots from b…
Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization
2010
Abstract Background The shell of the pearl-producing bivalve Pinctada margaritifera is composed of an organic cell-free matrix that plays a key role in the dynamic process of biologically-controlled biomineralization. In order to increase genomic resources and identify shell matrix proteins implicated in biomineralization in P. margaritifera, high-throughput Expressed Sequence Tag (EST) pyrosequencing was undertaken on the calcifying mantle, combined with a proteomic analysis of the shell. Results We report the functional analysis of 276 738 sequences, leading to the constitution of an unprecedented catalog of 82 P. margaritifera biomineralization-related mantle protein sequences. Component…
Molecular Bases for Sensitivity to Tubulin-Binding Herbicides in Green Foxtail
2004
Abstract We investigated the molecular bases for resistance to several classes of herbicides that bind tubulins in green foxtail (Setaria viridis L. Beauv.). We identified two α- and two β-tubulin genes in green foxtail. Sequence comparison between resistant and sensitive plants revealed two mutations, a leucine-to-phenylalanine change at position 136 and a threonine-to-isoleucine change at position 239, in the gene encoding α2-tubulin. Association of mutation at position 239 with herbicide resistance was demonstrated using near-isogenic lines derived from interspecific pairings between green foxtail and foxtail millet (Setaria italica L. Beauv.), and herbicide sensitivity bioassays combine…
Handbook of protocols for standardized measurement of terrestrial invertebrate functional traits
2017
Trait-based approaches are increasingly being used to test mechanisms underlying species assemblages and biotic interactions across a wide range of organisms including terrestrial arthropods and to investigate consequences for ecosystem processes. Such an approach relies on the standardized measurement of functional traits that can be applied across taxa and regions. Currently, however, unified methods of trait measurements are lacking for terrestrial arthropods and related macroinvertebrates (terrestrial invertebrates hereafter). Here, we present a comprehensive review and detailed protocol for a set of 29 traits known to be sensitive to global stressors and to affect ecosystem processes a…