Search results for "Bay"
showing 10 items of 1187 documents
Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids
2014
Reticulate evolution can be a major driver of diversification into new niches, especially in disturbed habitats and at the edges of ranges. Industrial fermentation strains of yeast provide a window into these processes, but progress has been hampered by a limited understanding of the natural diversity and distribution of Saccharomyces species and populations. For example, lager beer is brewed with Saccharomyces pastorianus, an alloploid hybrid of S. cerevisiae and S. eubayanus, a species only recently discovered in Patagonia, Argentina. Here, we report that genetically diverse strains of S. eubayanus are readily isolated from Patagonia, demonstrating that the species is well established the…
A probabilistic framework for automatic prostate segmentation with a statistical model of shape and appearance
2011
International audience; Prostate volume estimation from segmented prostate contours in Trans Rectal Ultrasound (TRUS) images aids in diagnosis and treatment of prostate diseases, including prostate cancer. However, accurate, computationally efficient and automatic segmentation of the prostate in TRUS images is a challenging task owing to low Signal-To-Noise-Ratio (SNR), speckle noise, micro-calcifications and heterogeneous intensity distribution inside the prostate region. In this paper, we propose a probabilistic framework for propagation of a parametric model derived from Principal Component Analysis (PCA) of prior shape and posterior probability values to achieve the prostate segmentatio…
Intra-specific variability and biological relevance of P3N-PIPO protein length in potyviruses
2013
Background:Pipo was recently described as a new ORF encoded within the genome of the Potyviridae family members (PNAS 105:5897-5902, 2008). It is embedded within the P3 cistron and is translated in the +2 reading frame relative to the potyviral long ORF as the P3N-PIPO fusion protein. In this work, we first collected pipo nucleotide sequences available for different isolates of 48 Potyvirus species. Second, to determine the biological implications of variation in pipo length, we measured infectivity, viral accumulation, cell-to-cell and systemic movements for two Turnip mosaic virus (TuMV) variants with pipo alleles of different length in three different susceptible host species, and tested…
Volcaniclastic Deposition and migration of basin depocentres after the eruption of the Neapolitan Yellow Tuff: The Pozzuoli Bay (Naples, Italy)
2012
The Campi Flegrei is an active caldera located on the coastal zone of SW Italy (Fig. 1), close to the town of Naples Bay, that has been characterized by explosive activity and unrest throughout the Late Quaternary. This area represents a very active segment of the Eastern Tyrrhenian margin and may be regarded as an ideal laboratory to understand the mechanisms of caldera dynamics and the interplay between volcanism, tectonics and sedimentary processes along a continental back-arc margin. Recent research at Campi Flegrei has shown that a significant part of the offshore volcaniclastic products and structures, the late-stage geodynamic evolution of the inner caldera resurgence and the stratal…
Symptoms and the body: Taking the inferential leap
2017
The relationship between the conscious experience of physical symptoms and indicators of objective physiological dysfunction is highly variable and depends on characteristics of the person, the context and their interaction. This relationship often breaks down entirely in the case of "medically unexplained" or functional somatic symptoms, violating the basic assumption in medicine that physical symptoms have physiological causes. In this paper, we describe the prevailing theoretical approach to this problem and review the evidence pertaining to it. We then use the framework of predictive coding to propose a new and more comprehensive model of the body-symptom relationship that integrates ex…
Approximate Bayesian Computation for Forecasting in Hydrological models
2018
Approximate Bayesian Computation (ABC) is a statistical tool for handling parameter inference in a range of challenging statistical problems, mostly characterized by an intractable likelihood function. In this paper, we focus on the application of ABC to hydrological models, not as a tool for parametric inference, but as a mechanism for generating probabilistic forecasts. This mechanism is referred as Approximate Bayesian Forecasting (ABF). The abcd water balance model is applied to a case study on Aipe river basin in Columbia to demonstrate the applicability of ABF. The predictivity of the ABF is compared with the predictivity of the MCMC algorithm. The results show that the ABF method as …
Distribuciones previas objetivas para el modelo Dirichlet-multinomial: una aplicación en la agricultura
2015
La chufa, Cyperus sculentus, es un tubérculo que se utiliza principalmente para la elaboración de horchata. Se cultiva en la comarca de l'Horta Nord, en Valencia, y tiene una gran importancia socioeconómica en la zona. La mancha negra en los tubérculos de chufa es una enfermedad de origen desconocido, que produce un ennegrecimiento de la piel que conlleva a su depreciación comercial, pues un cierto porcentaje de tubérculos deben ser desechados para su venta. El objetivo de este trabajo es analizar si la selección de tubérculos sin mancha negra, para su utilización como simiente, supone una mejora en la cosecha en cuanto a una menor incidencia de la enfermedad. Los datos analizados proceden …
Bayesian applications in dynamic econometric models
2009
The purpose of this thesis is to provide a few new ideas to the field of Bayesian econometrics. In particular, the focus of the thesis is on analyzing dynamic econometric models. In the first essay, we provide an easily implementable method for the Bayesian analysis of a simple hybrid DSGE model of Clarida et al. (1999). The forecasting properties of the model are tested against commonly used forecasting tools, such as Bayesian VARs and naïve forecasts based on univariate random walks. In particular, the predictability of three key macroeconomic-variables, inflation, short-term nominal interest rate and a measure of output gap, are studied using quarterly ex post and real-time U.S. data.Our…
MAVIE-Lab Sports: a mHealth for Injury Prevention and Risk Management in Sport
2018
International audience; Smart-phones technology and the development of mHealth (Mobile Health) applications offer an opportunity to design intervention tools to influence health behavior changes. The MAVIE-Lab is a mHealth application including a DSS (Desicion Support System) to assist in the personalized evaluation of HLIs (Home, Leisure and Sport Injuries) risk and to promote the adoption of prevention measures. MAVIE-Lab Sports will be the first module of the mobile application. The purpose of this PhD project is to improve a particular module of MAVIE-Lab, devoted to sports (MAVIE-Lab Sports), in different aspects: statistical modeling, design and ergonomics. It also aims to evaluate sy…
Phylogenetic relationship among genera of Polymorphidae (Acanthocephala), inferred from nuclear and mitochondrial gene sequences.
2013
Abstract Acanthocephalans of the family Polymorphidae Meyer, 1931 are obligate endoparasites with complex life cycles. These worms use vertebrates (marine mammals, fish-eating birds and waterfowl) as definitive hosts and invertebrates (amphipods, decapods and euphausiids) as intermediate hosts to complete their life cycle. Polymorphidae has a wordwide distribution, containing 12 genera, with approximately 127 species. The family is diagnosed by having a spinose trunk, bulbose proboscis, double-walled proboscis receptacle, and usually four to eight tubular cement glands. To conduct a phylogenetic analysis, in the current study sequences of the small (18S) and large-subunit (28S) ribosomal RN…