Search results for "Biomineral"

showing 10 items of 139 documents

Biomineralisations in crustaceans: storage strategies

2004

Abstract Crustaceans are a remarkable group of animals because of their ability to elaborate cyclically two kinds of calcified biomineralisations: an unstretchable exoskeleton (or cuticle) and also, for many species, depending of the way of life of the considered animal, transitory calcium deposits. They are in consequence subjected to a cyclic life and notably, to a periodical balance between two sources of calcium, exogenous and/or endogenous. The storage structures, essentially composed of calcium carbonate precipitated within a proteinaceous organic matrix, are very diversified. The calcium carbonate of the cuticle of most of the species is under a crystalline state and/or an amorphous …

CuticleGeneral EngineeringParathyroid hormonechemistry.chemical_elementBiologyCalciummedicine.diseaseCalcium in biologychemistry.chemical_compoundCalcium carbonatechemistryBiochemistrymedicineCarbonateCalcificationBiomineralizationComptes Rendus Palevol
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Discovery of Ca oxalate crystals associated with fungi in moss travertines (Bryoherms, freshwater heterogeneous stromatolites)

1995

Buffered decalcification of live moss and liverwort (Hepaticae) travertines resulted in the release of a large number of organisms (bacteria, cyanobacteria, fungi, eukaryotic algae, and small animals), which constitute an “organic mat”; (also called an algal mat or biofilm). This mat is calcified and commonly has laminations, allowing moss travertines to be considered as stromatolitic structures. After decalcification of 300 samples of travertines (using dilute acetic acid), only 9 released Ca oxalate crystals in the form of needle bundles, spherulites, and tetragonal bipyramidal prisms. These crystalline forms are identical to those found in some phanerophytes and soils. Mycelian filaments…

CyanobacteriaCalcitebiologyAragoniteengineering.materialbiology.organism_classificationMicrobiologyMossDiagenesischemistry.chemical_compoundAlgaeAlgal matchemistryBotanyEarth and Planetary Sciences (miscellaneous)engineeringEnvironmental ChemistryGeneral Environmental ScienceBiomineralizationGeomicrobiology Journal
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Experimental modeling of bacterially-induced Ca carbonate precipitation: new insights on possible mechanisms.

2015

The contribution of microorganisms, particularly bacteria, in carbonate mineral formation, the main natural processes controlling CO2 level in the atmosphere, has played an important role since the Archean Eon. In this study we review our recent experimental work on CaCO3 precipitation induced by two anoxygenic phototrophic bacteria (APB), Rhodovulum steppense A-20sT and Rhodovulum sp. S-17-65, and by cyanobacteria Gloeocapsa sp. f-6gl. These bacteria are representatives of two important groups of photosynthetic organisms present at the Earth surface both in the past and at the present times. The mechanisms of organomineralization deriving from APB and cyanobacteria activities are drastical…

CyanobacteriabiologyMechanical EngineeringMicroorganismbiology.organism_classificationPhotosynthesis[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsAnoxygenic photosynthesisGloeocapsa[SDV.IB.BIO] Life Sciences [q-bio]/Bioengineering/Biomaterialschemistry.chemical_compoundExtracellular polymeric substancechemistryMechanics of MaterialsEnvironmental chemistryCarbonateGeneral Materials Science[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsComputingMilieux_MISCELLANEOUSBiomineralization
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Biofabrication of biosilica-glass by living organisms

2008

Biosilicification is an evolutionarily old and widespread type of biomineralization both in unicellular and multicellular organisms, including sponges, diatoms, radiolarians, choanoflagellates, and higher plants. In the last few years combined efforts in molecular biology, cell biology, and inorganic and analytical chemistry have allowed the first insight into the molecular mechanisms by which these organisms form an astonishing variety of siliceous structures that cannot be achieved by chemical methods. Here we report about the present stage of knowledge on structure, biochemical composition, and mechanisms of biosilica formation, focusing our attention particularly on sponges because of t…

DiatomsModels MolecularSequence Homology Amino AcidProtein ConformationMolecular Sequence DataOrganic ChemistryBiologySilicon DioxideCathepsinsBiochemistryPoriferaMulticellular organismSequence homologyEvolutionary biologyDrug DiscoveryBiochemical compositionAnimalsGlassBiomineralizationBiofabricationNatural Product Reports
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Anisotropic lattice distortions in biogenic calcite induced by intra-crystalline organic molecules.

2006

9 pages; International audience; We have performed precise structural measurements on five different calcitic seashells by high-resolution X-ray powder diffraction on a synchrotron beam line and by laboratory single crystal X-ray diffraction. The unit cell parameters a and c of biogenic calcite were found to be systematically larger than those measured in the non-biogenic calcite. The maximum lattice distortion (about 2.10(-3)) was detected along the c-axis. Under heat treatment above 200 degrees C, a pronounced lattice relaxation was observed, which allowed us to conclude that anisotropic lattice swelling in biogenic calcite is induced by organic macromolecules incorporated within the sing…

DiffractionBiomineralizationMESH : Calcium CarbonateMESH: Bivalvia02 engineering and technologyCrystallography X-Ray01 natural scienceslaw.inventionchemistry.chemical_compoundStructural BiologylawMESH : BivalviaOstreaMESH : AnisotropyMESH: AnimalsOrganic ChemicalsCrystallizationAnisotropyMESH: CrystallizationCalciteMESH: OstreaSynchrotron radiationCalciteCrystal growth and nucleationMESH : Organic Chemicals021001 nanoscience & nanotechnologyMESH: Calcium CarbonateMESH : CrystallizationX-ray crystallographyCrystallization0210 nano-technologyMaterials scienceMESH : Crassostrea010402 general chemistryCalcium CarbonateAnimalsCrassostreaIntra-crystalline organic molecules[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsBiogenic crystalsMESH : OstreaMESH: Organic ChemicalsMESH: Crystallography X-Ray[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsBivalvia0104 chemical sciencesX-ray diffractionCrystallographyMESH: CrassostreachemistryMESH: AnisotropyAnisotropyMESH : AnimalsMESH : Crystallography X-RaySingle crystalPowder diffractionBiomineralization
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Ab Initio Structure Determination of Vaterite by Automated Electron Diffraction

2012

tion that is fundamental for understanding material properties. Still, a number of compounds have eluded such kinds of analysis because they are nanocrystalline, highly disordered, with strong pseudosymmetries or available only in small amounts in polyphasic or polymorphic systems. These materials are crystallographically intractable with conventional Xray or synchrotron radiation diffraction techniques. Single nanoparticles can be visualized by high-resolution transmission electron microscopy (HR-TEM) up to sub�ngstrom resolution, [2] but obtaining 3D information is still a difficult task, especially for highly beam-sensitive materials and crystal structures with long cell parameters. Elec…

DiffractionReflection high-energy electron diffractionmetastable phaseElectron crystallographyChemistryResolution (electron density)Analytical chemistrybiomineralization; calcium carbonate; electron crystallography; metastable phase; structure determinationElectronsGeneral ChemistrybiomineralizationCatalysisNanocrystalline materialstructure determinationAutomationCrystallographyelectron crystallographyX-Ray DiffractionElectron diffractionMicroscopy Electron ScanningNanoparticlescalcium carbonateAntacidsPowder diffractionElectron backscatter diffraction
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Novel molluskan biomineralization proteins retrieved from proteomics: a case study with upsalin.

2012

12 pages; International audience; The formation of the molluskan shell is regulated by an array of extracellular proteins secreted by the calcifying epithelial cells of the mantle. These proteins remain occluded within the recently formed biominerals. To date, many shell proteins have been retrieved, but only a few of them, such as nacreins, have clearly identified functions. In this particular case, by combining molecular biology and biochemical approaches, we performed the molecular characterization of a novel protein that we named Upsalin, associated with the nacreous shell of the freshwater mussel Unio pictorum. The full sequence of the upsalin transcript was obtained by RT-PCR and 5'/3…

ElectrophoresisMolecular Sequence DataBiologyProteomicsBioinformaticsBiochemistryHomology (biology)03 medical and health sciencesproteomicsGene silencingAnimalsAmino Acid Sequence[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular BiologyPeptide sequence030304 developmental biology0303 health sciencesMineralsBase Sequence030302 biochemistry & molecular biologyOrganic ChemistrymollusksImmunogold labelling[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsbiomineralizationIn vitroproteinsfreshwater bivalvesBiochemistryMolluscaMicroscopy Electron ScanningMolecular MedicineTarget proteinBiomineralization
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Self-healing, an intrinsic property of biomineralization processes

2013

The sponge siliceous spicules are formed enzymatically via silicatein, in contrast to other siliceous biominerals. Originally, silicatein had been described as a major structural protein of the spicules that has the property to allow a specific deposition of silica onto their surface. More recently, it had been unequivocally demonstrated that silicatein displays a genuine enzyme activity, initiating and maintaining silica biopolycondensation at low precursor concentrations (<2 mM). Even more, as silicatein becomes embedded into the biosilica polymer, formed by the enzyme, it retains its functionality to enable a controlled biosilica deposition. The protection of silicatein through the biosi…

Enzyme functionMolecular Sequence DataClinical BiochemistryNanotechnology02 engineering and technologyBiochemistry03 medical and health sciencesSponge spiculeGeneticsAnimalsAmino Acid SequenceMolecular Biology030304 developmental biologyMinerals0303 health sciencesbiologyChemistryStructural proteinCell BiologySilicon Dioxide021001 nanoscience & nanotechnologybiology.organism_classificationCathepsinsPoriferaPhysical stressSpongeSelf-healingBiophysics0210 nano-technologyHybrid materialSequence AlignmentBiomineralizationIUBMB Life
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The formation and mineralization of mollusk shell.

2011

27 pages; International audience; In the last years, the field of mollusk biomineralization has known a tremendous mutation. The most recent advances deal with the nanostructure of shell biominerals, and with the identification of several shell matrix proteins: on one hand, the complex hierarchical organization of shell biominerals has been deciphered in few models, like nacre. On the other hand, although proteins represent a minor shell component, they are the major macromolecules that control biocrystal synthesis. Until recently, the paradigm was to consider that this control occurs by two antagonist mechanisms: crystal nucleation and growth inhibition. Emerging models try to translate a …

General Immunology and MicrobiologyChemistryAnimal ShellsMolluscaBiophysicsShell matrixAnimals[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/Biomaterials[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsMineralization (biology)General Biochemistry Genetics and Molecular BiologyWhole systemsBiomineralization
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The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties

2013

19 pages; International audience; Proteins that are occluded within the molluscan shell, the so-called shell matrix proteins (SMPs), are an assemblage of biomolecules attractive to study for several reasons. They increase the fracture resistance of the shell by several orders of magnitude, determine the polymorph of CaCO(3) deposited, and regulate crystal nucleation, growth initiation and termination. In addition, they are thought to control the shell microstructures. Understanding how these proteins have evolved is also likely to provide deep insight into events that supported the diversification and expansion of metazoan life during the Cambrian radiation 543 million years ago. Here, we p…

Glycoside Hydrolasesmedicine.medical_treatmentproteomeGastropodaMolecular Sequence DataBiologyBiochemistrymollusc shell matrix proteinsTranscriptomeCyclophilins03 medical and health sciencesPaleontologyLineage specificAnimal ShellsSequence Analysis ProteinTandem Mass Spectrometry[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]evolutionmedicineAnimalsAmino Acid Sequence14. Life underwaterMantle (mollusc)[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular BiologyCarbonic Anhydrases030304 developmental biologyExtracellular Matrix Proteins0303 health sciencesProteaseEpidermal Growth FactorSequence Homology Amino AcidLimpet030302 biochemistry & molecular biologyCell Biologybiology.organism_classification[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsbiomineralizationPeptide FragmentsProtein Structure TertiaryPeroxidasesEvolutionary biology[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]ProteomeLottia giganteaElectrophoresis Polyacrylamide GelmantleBiomineralization
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