Search results for "Breeding"
showing 10 items of 475 documents
Genome-wide scan for selection signatures reveals novel insights into the adaptive capacity in local North African cattle
2020
International audience; Natural-driven selection is supposed to have left detectable signatures on the genome of North African cattle which are often characterized by the fixation of genetic variants associated with traits under selection pressure and/or an outstanding genetic differentiation with other populations at particular loci. Here, we investigate the population genetic structure and we provide a first outline of potential selection signatures in North African cattle using single nucleotide polymorphism genotyping data. After comparing our data to African, European and indicine cattle populations, we identified 36 genomic regions using three extended haplotype homozygosity statistic…
Preliminary identification of self-incompatibility genotypes of Sicilian almond landraces
2018
Sicily is the main almond producer in Italy. The almond tree is one of the main protagonists of the Sicilian agrarian landscape, especially in the winter, when the bare branches are covered by white or pinkish flowers. Its presence is particularly significant in the province of Agrigento, in Syracuse and in Ragusa areas, where the almond nut is used for fresh consumption and for the preparation of typical sweets. The extremely rich Sicilian almond germplasm can be useful for genetic improvement, since many local landraces possess aromatic characteristics of the nuts of high value. Self-incompatibility in this species is gametophytic and controlled by a multi-allelic S locus, coding for the …
Ploidy manipulation and citrus breeding, genetics and genomics
2020
Polyploidy appears to have played a limited role in citrus germplasm evolution. However, today, ploidy manipulation is an important component of citrus breeding strategies. For varieties, the main objective is to develop triploid seedless cultivars. For rootstock, the aim is to cumulate interesting traits in tetraploid hybrids and to improve adaptation to biotic and abiotic stresses. This chapter starts with a review of the recent knowledge acquired on the natural mechanisms of citrus polyploidization and tetraploid meiosis. Chromosome doubling of nucellar cells is frequent in apomictic citrus and results in tetraploid seedling production. Unreduced gametes are also frequently produced, mai…
Morpho-physiological and adaptive variation of Italian germplasm of sulla (Hedysarum coronarium L.)
2014
Sulla is a biennial forage legume native to the central-western Mediterranean Basin and has increasing interest for regions with Mediterranean-climate. The Italian germplasm is a reservoir of variation for important agronomic traits. This study aimed to support breeding programs by investigating patterns of agronomic, adaptive and morpho-physiological variation among ecotypes collected from the three main Italian regions of species cultivation: central Italy, and the two islands of Sicily and Sardinia. Forage yield and morpho-physiological traits were evaluated at a site with Mediterranean climate in Sicily. Forage yield and cold tolerance in a cold-prone site of northern Italy were also as…
Assessment of genetic diversity of Latvian and Swedish sweet cherry (Prunus avium L.) genetic resources collections by using SSR (microsatellite) mar…
2009
Abstract Three previously described highly polymorphic SSR (microsatellite) primer pairs were tested on 126 sweet cherry ( Prunus avium L.) accessions to adapt a fast, reliable method for preliminary screening of sweet cherry germplasm collections and to compare two sweet cherry germplasm collections: at the Latvia State Institute of Fruit-Growing, Dobele (LIFG-Dobele) and at the Division of Horticultural Genetics and Plant Breeding at Balsgard, Department of Crop Sciences, Swedish University of Agricultural Sciences (SLU-Balsgard). The SSR loci were highly polymorphic with 4–10 different alleles and 5–18 genotypes. Heterozygosity values ranged from 0.431 to 0.809, gene diversity (PIC) valu…
Genetic Diversity in Latvian Spring Barley Association Mapping Population
2012
Certified organic crop area is continuously increasing in European Union and in Latvia (Eurostat data), despite somewhat lower yield and higher potential for disease damage in organic farming. It is increasingly recognized that breeding varieties for organic farming requires focus on specific traits that may be less important under conventional agriculture. Molecular markers are becoming essential tools for plant breeding allowing reducing time and cost of development of new varieties by early selection of progeny with desired traits. However, there is lack of information on molecular markers for traits that may be important for organic farming, such as plant morphological traits ensuring c…
Seabirds mated for life migrate separately to the same places: behavioural coordination or shared proximate causes?
2015
Long-term pair bonds occur in diverse animal taxa, but they are most common in birds, and can last from a few years to a lifetime. In many of these species, after the reproductive season, birds migrate to distant nonbreeding grounds where they remain for several months, and until recently, little was known about whether partners maintain contact during migration. This gap in knowledge was primarily due to past methodological difficulties in tracking long-term, large-scale movements of individuals. However, the development of new animal-borne geolocation devices has enabled researchers to track movements of individuals for a year or more. We tracked the annual migrations of both members of b…
A higher incidence of moult–breeding overlap in great tits across time is linked to an increased frequency of second clutches: a possible effect of g…
2021
The rise of temperatures due to global warming is related to a lengthening of the breeding season in many bird species. This allows more pairs to attempt two clutches within the breeding season, thus finishing their breeding activity later in the season and therefore potentially overlapping these with post–breeding moult. We tested whether this occurred in two Spanish great tit Parus major populations. The proportion of pairs laying second clutches increased from 1 % to 32 % over the study period in one of the populations (Sagunto, 1995–2019), while it did not change in the other (Quintos, 2006–2019; mean 5 %). We did not find any temporal trend for moult start date of late–breeding birds i…
Bayesian Survival Analysis to Model Plant Resistance and Tolerance to Virus Diseases
2017
Viruses constitute a major threat to large-scale production of crops worldwide producing important economical losses and undermining sustainability. We evaluated a new plant variety for resistance and tolerance to a specific virus through a comparison with other well-known varieties. The study is based on two independent Bayesian accelerated failure time models which assess resistance and tolerance survival times. Information concerning plant genotype and virus biotype were considered as baseline covariates and error terms were assumed to follow a modified standard Gumbel distribution. Frequentist approach to these models was also considered in order to compare the results of the study from…
Comparing RADseq and microsatellites for estimating genetic diversity and relatedness : Implications for brown trout conservation
2019
The conservation and management of endangered species requires information on their genetic diversity, relatedness and population structure. The main genetic markers applied for these questions are microsatellites and single nucleotide polymorphisms (SNPs), the latter of which remain the more resource demanding approach in most cases. Here, we compare the performance of two approaches, SNPs obtained by restriction-site-associated DNA sequencing (RADseq) and 16 DNA microsatellite loci, for estimating genetic diversity, relatedness and genetic differentiation of three, small, geographically close wild brown trout (Salmo trutta) populations and a regionally used hatchery strain. The genetic di…