Search results for "Burrow"

Identifying fossil rabbit warrens: Insights from a taphonomical analysis of a modern warren

2016

14 pages; International audience; The European rabbit is a small burrowing mammal that is particularly abundant in Western Europe since the Pleistocene and introduced around the world over the last few centuries. Rabbit bones are regularly recovered from archaeological and palaeontological sites; however, demonstrating their contemporaneity with associated material is often difficult. Additionally, determining the origin of rabbit remains in fossil sites is equally problematic due to the lack of reference collections for natural accumulations. In order to address these issues, we excavated a modern rabbit warren in southwestern France using modern archaeological field methods and techniques…

Extended winters entail long-term costs for insect offspring reared in an overwinter burrow

2018

International audience; Winter imposes an ecological challenge to animals living in colder climates, especially if these adverse conditions coincide with reproduction and offspring rearing. To overcome this challenge, some insects burrow in the soil to protect adults, larvae, or eggs from negative effects of winter. However, whether this protection is effective against any long-term consequences of changes in winter duration is unclear. Here, we investigated the long-term effects of winter length variation on eggs of the European earwig Forficula auricularia. In this insect, females construct and maintain a burrow between late autumn and spring, in which they provide extensive forms of care…

Multiple-stressor effects of warming and acidification on the embryonic development of an estuarine fiddler crab

2021

Made available in DSpace on 2021-06-25T10:56:04Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-06-05 Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) Predicted effects of anthropogenic climate change on estuarine and coastal organisms are complex, and early life history stages of calcified ectotherms are amongst the most sensitive groups. Despite the importance of understanding their vulnerability, we lack information on the effects of multiple stressors on the embryonic development of estuarine and burrowing organisms, mainly mangrove-associated species. Here, we determined the combined effects of elevated temperature and decreased pH on the embryonic development of th…

Another alien bug in Europe: the first case of transcontinental introduction <br />of the Asiatic burrower bug Macroscytus subaeneus (Dallas, 1…

2019

The Oriental burrower bug Macroscytus subaeneus (Dallas, 1851) (Hemiptera: Heteroptera: Cydnidae: Cydninae), presently known only from single localities in Flores (Indonesia), the Philippines and Thailand, is recorded from the United Kingdom (hereafter U.K.). A single female specimen was collected on the semi-rural edge of Bath city by a Starling (Sturnus vulgaris L.) and taken to its nest from which it was retrieved during 2015. The specimen is illustrated and its diagnostic characters are provided. We hypothesize that this specimen could have been imported with a shipping container from Thailand. 

Vertical sediment migrations of dominant midge species in subtropical lakes with implications for bioassessment

2018

Abstract Propsilocerus akamusi (Diptera: Chironomidae) is a dominant species in numerous eutrophic lakes and they could burrow into deep sediments (>30 cm) during summer months. However, common-used grab samplers are efficient in collecting surface-dwelling species (

Estimating the abundance of burrow-nesting species through the statistical analysis of combined playback and visual surveys

2016

Like night and day: Reversals of thermal gradients across ghost crab burrows and their implications for thermal ecology

2018

Abstract Ghost crabs, Ocypode cordimanus, inhabit relatively hostile environments subject to thermal fluctuations, including both diurnal and seasonal cycles. For many ectotherms, including ghost crabs, a major challenge is to remain cool during hot daytime temperatures. This can be achieved by adopting a fossorial lifestyle, taking advantage of thermal refuge afforded by burrows of sufficient depth. Another consideration, often overlooked, is the potential advantage associated with ready access to a thermal energy source (a “charging station”) when surface temperatures are cooler. Being able to rapidly elevate body temperature during cool periods would enhance the crab's ability to maintai…

The colored longest common prefix array computed via sequential scans

2018

Due to the increased availability of large datasets of biological sequences, the tools for sequence comparison are now relying on efficient alignment-free approaches to a greater extent. Most of the alignment-free approaches require the computation of statistics of the sequences in the dataset. Such computations become impractical in internal memory when very large collections of long sequences are considered. In this paper, we present a new conceptual data structure, the colored longest common prefix array (cLCP), that allows to efficiently tackle several problems with an alignment-free approach. In fact, we show that such a data structure can be computed via sequential scans in semi-exter…

Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data

2016

Next-generation sequencing technologies have led to the sequencing of more and more genomes, propelling related research into the era of big data. In this paper, we present ParaBWT, a parallelized Burrows-Wheeler transform (BWT) and suffix array construction algorithm for big genome data. In ParaBWT, we have investigated a progressive construction approach to constructing the BWT of single genome sequences in linear space complexity, but with a small constant factor. This approach has been further parallelized using multi-threading based on a master-slave coprocessing model. After gaining the BWT, the suffix array is constructed in a memory-efficient manner. The performance of ParaBWT has b…

Computing the Original eBWT Faster, Simpler, and with Less Memory

2021

Mantaci et al. [TCS 2007] defined the \(\mathrm {eBWT}\) to extend the definition of the \(\mathrm {BWT}\) to a collection of strings. However, since this introduction, it has been used more generally to describe any \(\mathrm {BWT}\) of a collection of strings, and the fundamental property of the original definition (i.e., the independence from the input order) is frequently disregarded. In this paper, we propose a simple linear-time algorithm for the construction of the original \(\mathrm {eBWT}\), which does not require the preprocessing of Bannai et al. [CPM 2021]. As a byproduct, we obtain the first linear-time algorithm for computing the \(\mathrm {BWT}\) of a single string that uses …