Search results for "COMPRESSION"

FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy

2021

Abstract Background Storage of genomic data is a major cost for the Life Sciences, effectively addressed via specialized data compression methods. For the same reasons of abundance in data production, the use of Big Data technologies is seen as the future for genomic data storage and processing, with MapReduce-Hadoop as leaders. Somewhat surprisingly, none of the specialized FASTA/Q compressors is available within Hadoop. Indeed, their deployment there is not exactly immediate. Such a State of the Art is problematic. Results We provide major advances in two different directions. Methodologically, we propose two general methods, with the corresponding software, that make very easy to deploy …

The Myriad Virtues of Wavelet Trees

2009

Wavelet Trees have been introduced in [Grossi, Gupta and Vitter, SODA '03] and have been rapidly recognized as a very flexible tool for the design of compressed full-text indexes and data compressors. Although several papers have investigated the beauty and usefulness of this data structure in the full-text indexing scenario, its impact on data compression has not been fully explored. In this paper we provide a complete theoretical analysis of a wide class of compression algorithms based on Wavelet Trees. We also show how to improve their asymptotic performance by introducing a novel framework, called Generalized Wavelet Trees, that aims for the best combination of binary compressors (like,…

Textual data compression in computational biology: Algorithmic techniques

2012

Abstract In a recent review [R. Giancarlo, D. Scaturro, F. Utro, Textual data compression in computational biology: a synopsis, Bioinformatics 25 (2009) 1575–1586] the first systematic organization and presentation of the impact of textual data compression for the analysis of biological data has been given. Its main focus was on a systematic presentation of the key areas of bioinformatics and computational biology where compression has been used together with a technical presentation of how well-known notions from information theory have been adapted to successfully work on biological data. Rather surprisingly, the use of data compression is pervasive in computational biology. Starting from…

Amelioration of spinal cord compressive injury by pharmacological preconditioning with erythropoietin and a nonerythropoietic erythropoietin derivati…

2006

Object Spinal cord injury (SCI) is a devastating clinical syndrome for which no truly efficacious therapy has yet been identified. In preclinical studies, erythropoietin (EPO) and its nonerythropoietic derivatives asialoEPO and carbamylated EPO have markedly improved functional outcome when administered after compressive SCI. However, an optimum treatment paradigm is currently unknown. Because the uninjured spinal cord expresses a high density of EPO receptor (EPOR) in the basal state, signaling through these existing receptors in advance of injury (pharmacological preconditioning) might confer neuroprotection and therefore be potentially useful in situations of anticipated damage. Methods…

Customized approach for otogenic brain abscess: the neurosurgical prospective.

2017

Intraparenchymal Brain Hemorrhage: "Birdlime" Effect Usefulness.

2018

The authors previously reported the novel transposition techniquefor microvascular decompression (MVD) using a tissue glue-coated collagen sponge (TachoSil Tissue Sealing Sheet; CSLBehring KK, Tokyo, Japan) soaked withfibrin glue (Tisseel 2-Component Fibrin Sealant, Vapor-Heated; Baxter Healthcare,Glendale, California, USA), termed the“birdlime”technique

Two episodes of Taravana syndrome in a breath-hold diver with hyperhomocysteinemia

2018

Key Clinical Message Taravana syndrome is a rare dysbaric disease characterized by neurologic signs and symptoms. Differently from others decompression illness, it has unspecified pathophysiology and unclear predisposing factors. Our cases suggest that thrombophilic state due to hyperhomocysteinemia could increase the risk to develop Taravana syndrome.

Angiocardiographic digital still images compressed via irreversible methods: concepts and experiments.

1997

Abstract We defined, implemented and tested two new methods for irreversible compression of angiocardiographic still images: brightness error limitation (BEL) and pseudo-gradient adaptive brightness and contrast error limitation (PABCEL). The scan path used to compress the digital images is based on the Peano–Hilbert plane-filling curve. The compression methods limit, for each pixel, the brightness errors introduced when approximating the original image (i.e. the difference between the values of corresponding pixels as grey levels). Additional limitations are imposed to the contrast error observed when considering along the scan path consecutive pixels of both the original and the reconstru…

Effect of Water on the Mechanical Behaviour of Extruded Flat Bread

1997

Abstract The effect of water on the mechanical properties of extruded breads was studied, at room temperature. As the moisture content was increased from 6 to 9% moisture, the resistance to fracture (compression tests) or rupture (tensile tests) was improved. Above this moisture range, plasticisation by water was the dominant phenomenon. The brittle to ductile transition was observed to occur within a moisture content range from 9 to 13·7% (w/w). The influence of water on the crispness of extruded bread, evaluated with sensory evaluation, is also described.

Combinatorial Transforms : Application in Lossless Image Compression

2011

International audience; Common image compression standards are usually based on frequency transform such as Discrete Cosine Transform. We present a different approach for lossless image compression, which is based on a combinatorial transform. The main transform is Burrows Wheeler Transform (BWT) which tends to reorder symbols according to their following context. It becomes one of promising compression approach based on context modeling. BWT was initially applied for text compression software such as BZIP2 nevertheless it has been recently applied to the image compression field. Compression schemes based on the Burrows Wheeler Transform have been usually lossless; therefore we implement th…