Search results for "COMPUTATION"

showing 10 items of 7362 documents

A highly enantioselective abiotic receptor for malate dianion in aqueous solution

2006

The highly enantioselective molecular recognition of the malate dianion by a synthetic receptor in aqueous solution has been studied by potentiometric titrations, mass spectrometry (ESI-MS), diffusion measurements (PGSE NMR) and molecular modeling. Garcia-España Monsonis, Enrique, Enrique.Garcia-Es@uv.es

AnionsModels MolecularMalate dianionSpectrometry Mass Electrospray IonizationMagnetic Resonance SpectroscopyMolecular modelUNESCO::QUÍMICADiffusionPotentiometric titrationMalatesMolecular modelingAbiotic receptorMass spectrometry:QUÍMICA [UNESCO]CatalysisSubstrate SpecificityMolecular recognitionComputational chemistryMaterials ChemistryOrganic chemistryAqueous solutionReceptorAbiotic componentEnantioselectiveAqueous solutionMolecular StructureChemistrySpectrometryMeasurementsMetals and AlloysEnantioselective synthesisWaterHydrogen BondingStereoisomerismGeneral ChemistryGeneral MedicineUNESCO::QUÍMICA::Química macromolecularCombinatorial chemistrySurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsSolutionsCeramics and CompositesPotentiometryEnantioselective ; Abiotic receptor ; Malate dianion ; Aqueous solution ; Spectrometry ; Measurements ; Molecular modeling:QUÍMICA::Química macromolecular [UNESCO]
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Experimental and Theoretical Studies of Nonclassical d 0 Cyclopentadienyl Polyhydride Complexes of Molybdenum and Tungsten

1998

Low-temperature protonation of compounds Cp{sup *}MH{sub 5}(PMe{sub 3}) (M = Mo, 1; W, 2) by HBF{sub 4}{center_dot}Et{sub 2}O in CD{sub 2}Cl{sub 2} or CDFCl{sub 2} affords the thermally unstable hexahydride derivatives [Cp{sup *}MH{sub 6}(PMe{sub 3})]{sup +} (M = Mo, 3; W, 4). The corresponding protonation of 1- and 2-d{sup 5} affords 3- and 4-d{sup 5}, respectively. The {Delta}{delta} on going from H{sub 6} to HD{sub 5} is small for both compounds, but positive for 3 and negative for 4, and no isotopic perturbation of resonance (IPR) is observed. The T{sub 1min} at 400 MHz for [Cp{sup *}MH{sub 6}(PMe{sub 3})]{sup +} apparently doubles on going from Mo to W (52 ms for 3 and approximately 10…

AnionsReaction mechanismschemistry.chemical_elementProtonation010402 general chemistryLigands01 natural sciencesInorganic ChemistryCyclopentadienyl complexChemical structureMathematical methodsComputational chemistryMolecule[CHIM.COOR]Chemical Sciences/Coordination chemistryPhysical and Theoretical Chemistry010405 organic chemistryHydrideOrganic Chemistry3. Good health0104 chemical sciencesCrystallographychemistryChemical bondMolybdenumPotential energy surfaceDihydrogen complex
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Anion Recognition by a Bioactive Diureidodecalin Anionophore: Solid-State, Solution, and Computational Studies

2018

Recent work has identified a bis-(p-nitrophenyl)ureidodecalin anion carrier as a promising candidate for biomedical applications, showing good activity for chloride transport in cells yet almost no cytotoxicity. To underpin further development of this and related compounds, a detailed structural and binding investigation is reported. Crystal structures of the transporter as five solvates confirm the diaxial positioning of urea groups while revealing a degree of conformational flexibility. Structures of complexes with Cl−, Br−, NO3 −, SO4 2− and AcO−, supported by computational studies, show how the binding site can adapt to accommodate these anions. 1H NMR binding studies revealed exception…

Anionsinorganic chemicalsMagnetic Resonance SpectroscopyAnion ReceptorsMolecular Conformationreceptorsanion recognitionCrystal structureCrystallography X-Ray010402 general chemistry01 natural sciencesChlorideCatalysisNitrophenolsComputers MolecularPhysico-chimie généraleChloridesChimie des colloïdesTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYmedicineUreaChimieMoleculehost–guest interactionsBinding siteta116Binding SitesFull Paper010405 organic chemistryChemistryHydrogen bondOrganic ChemistryChimie des surfaces et des interfacesGeneral ChemistryFull PapersAffinities0104 chemical sciences3. Good healthChimie organiqueCrystallographyhydrogen bondssolid-state structuresProton NMRSelectivityanionsmedicine.drugChemistry - A European Journal
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Hierarchical-ACA DBEM for Anisotropic Three-Dimensional Time-Harmonic Fracture Mechanics

2012

A hierarchical BEM solver for the analysis of three-dimensional anisotropic time-harmonic fracture mechanics problems is presented. A thorough investigation on the relations and interactions between the numerically computed anisotropic fundamental solutions and the algorithm used to approximate the blocks of the hierarchical matrix, namely Adaptive Cross Approximation, is carried out leading to the employed computational strategy. The use of the hierarchical matrices and iterative solvers is proved as an effective technique for speeding up the solution procedure and reducing the required memory storage in time-harmonic three-dimensional anisotropic fracture mechanics problems.

Anisotropic elastodynamic fracture mechanics Fast BEM Large scale computationsSettore ING-IND/04 - Costruzioni E Strutture Aerospaziali
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Mitigating DDoS using weight‐based geographical clustering

2020

Distributed denial of service (DDoS) attacks have for the last two decades been among the greatest threats facing the internet infrastructure. Mitigating DDoS attacks is a particularly challenging task as an attacker tries to conceal a huge amount of traffic inside a legitimate traffic flow. This article proposes to use data mining approaches to find unique hidden data structures which are able to characterize the normal traffic flow. This will serve as a mean for filtering illegitimate traffic under DDoS attacks. In this endeavor, we devise three algorithms built on previously uncharted areas within mitigation techniques where clustering techniques are used to create geographical clusters …

Anomaly intrusion detectionsComputer Networks and CommunicationsComputer scienceComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKSDenial-of-service attackFault tolerancecomputer.software_genreClustering techniquesData segmentComputer Science ApplicationsTheoretical Computer ScienceComputational Theory and MathematicsMitigating DDoS attacksCloud burstingData miningCluster analysisWeight based dosingcomputerSoftwareAddress clusteringMitigation techniquesConcurrency and Computation: Practice and Experience
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The transcriptome of Echinostoma caproni adults: further characterization of the secretome and identification of new potential drug targets.

2013

Abstract Echinostomes are cosmopolitan parasites that infect a large number of different warm-blooded hosts, both in nature and in the laboratory. They also constitute an important group of food-borne trematodes of public health importance mainly in Southeast Asia and the Far East. In addition, echinostomes are an ideal model to study several aspects of intestinal helminth biology, since they present a number of advantages. For example, echinostomes are large worms whose life cycle is relatively easy to maintain in the laboratory. Recently, several studies documented their great value in the study of intestinal helminth–vertebrate host relationship. Detailed knowledge of their genome, trans…

AnthelminticsEchinostomiasisProteomeved/biologyved/biology.organism_classification_rank.speciesBiophysicsComputational biologyHelminth ProteinsBiologyBiochemistryMolecular biologyGenomeHomology (biology)TranscriptomeSecretory proteinMetabolomicsDrug Delivery SystemsEchinostomaProteomeHelminthsAnimalsAmino Acid SequenceModel organismJournal of proteomics
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Monoradicals and Diradicals of Dibenzofluoreno[3,2-b]fluorene Isomers: Mechanisms of Electronic Delocalization

2020

The preparation of a series of dibenzo- and tetrabenzo-fused fluoreno[3,2-b]fluorenes is disclosed, and the diradicaloid properties of these molecules are compared with those of a similar, previously reported series of anthracene-based diradicaloids. Insights on the diradical mode of delocalization tuning by constitutional isomerism of the external naphthalenes has been explored by means of the physical approach (dissection of the electronic properties in terms of electronic repulsion and transfer integral) of diradicals. This study has also been extended to the redox species of the two series of compounds and found that the radical cations have the same stabilization mode by delocalization…

AnthraceneDiradicalGeneral ChemistryFluoreneCarbocation010402 general chemistry01 natural sciencesBiochemistryCatalysis0104 chemical scienceschemistry.chemical_compoundDelocalized electronColloid and Surface ChemistrychemistryComputational chemistryStructural isomerMoleculeCarbanionJournal of the American Chemical Society
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Understanding the ring current effects on magnetic shielding of hydrogen and carbon nuclei in naphthalene and anthracene

2008

The local response to an external magnetic field normal to the molecular plane of naphthalene and anthracene was investigated via current density and magnetic shielding density maps. The Biot-Savart law shows that the deshielding caused by pi-ring currents in naphthalene is stronger for alpha- than for beta-protons due to geometrical factors. The shielding tensor of the carbon nuclei in both molecules is strongly anisotropic and its out-of-plane component determines the up-field chemical shift of (13)C in nuclear magnetic resonance spectra. The pi-ring currents flowing beyond the C-skeleton in front of a probe carbon nucleus, and on remote parts of the molecular perimeter, yield positive co…

AnthraceneHydrogennaphthalenechemistry.chemical_elementGeneral ChemistryAromatic ring currentMagnetic fieldComputational Mathematicschemistry.chemical_compoundchemistrycurrent density mapsElectromagnetic shieldingproton and carbon chemical shiftAtomic physicsnaphthalene; ring currents; proton and carbon chemical shift; current density mapsCarbonCurrent densityring currentsRing currentJournal of Computational Chemistry
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Density functional theory studies of OH-modified open-ended single-wall zigzag carbon nanotubes (SWCNTs)

2010

Abstract Functionalized carbon nanotubes (CNTs) are often formed as result of oxidation and cleaning of raw product grown on metal catalyst. Structure and energy of ideal and OH-modified single-wall nanotubes (SWCNTs) of different length (2.8, 7.0 and 13.5 A) were obtained at the DFT-B3LYP level. From one to nine OH groups were added at the end of the nanotube and a nonadditive dependence of attachment energy on the number of substituents was observed. The energetics of SWCNT end substitution with OH groups was supported by high level MP2 and CCSD(T) determination of reaction energy: R – H + 1 / 2 O 2 → R – OH + Δ E for methane, benzene and anthracene. In addition, a vibrational analysis of…

AnthraceneNanotubeReaction energyCarbon nanotubeCondensed Matter PhysicsBiochemistryMethanelaw.inventionchemistry.chemical_compoundZigzagchemistryComputational chemistrylawPhysical chemistryDensity functional theoryPhysical and Theoretical ChemistryBenzeneJournal of Molecular Structure: THEOCHEM
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DHFR Inhibitors: Reading the Past for Discovering Novel Anticancer Agents.

2019

Dihydrofolate reductase inhibitors are an important class of drugs, as evidenced by their use as antibacterial, antimalarial, antifungal, and anticancer agents. Progress in understanding the biochemical basis of mechanisms responsible for enzyme selectivity and antiproliferative effects has renewed the interest in antifolates for cancer chemotherapy and prompted the medicinal chemistry community to develop novel and selective human DHFR inhibitors, thus leading to a new generation of DHFR inhibitors. This work summarizes the mechanism of action, chemical, and anticancer profile of the DHFR inhibitors discovered in the last six years. New strategies in DHFR drug discovery are also provided, …

AntifungalCancer chemotherapymedicine.drug_classDrug Evaluation Preclinicaldihydrofolate reductase (DHFR) enzymePharmaceutical ScienceAntineoplastic AgentsComputational biologyReview01 natural scienceshybrid compoundsAnalytical Chemistrylcsh:QD241-44103 medical and health sciencesStructure-Activity RelationshipFolic Acidlcsh:Organic chemistryheterocyclic compoundsNeoplasmsDihydrofolate reductaseparasitic diseasesDrug DiscoverymedicineAnimalsHumansPhysical and Theoretical Chemistry030304 developmental biology0303 health sciencesHeterocyclic compoundbiology010405 organic chemistryDrug discoveryOrganic ChemistryDHFR inhibitors as anticancer agentSettore CHIM/08 - Chimica Farmaceutica0104 chemical sciencesDHFR drug discoveryTetrahydrofolate DehydrogenaseMechanism of actionChemistry (miscellaneous)Settore CHIM/03 - Chimica Generale E InorganicaDHFR inhibitors as anticancer agentsbiology.proteinMolecular MedicineFolic Acid Antagonistsmedicine.symptomMolecules (Basel, Switzerland)
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