Search results for "CONI"

showing 10 items of 984 documents

A Three-State Model for the Photophysics of Adenine

2006

An ab initio theoretical study at the CASPT2 level is reported on minimum energy reaction paths, state minima, transition states, reaction barriers, and conical intersections on the potential energy hypersurfaces of two tautomers of adenine: 9H- and 7H-adenine. The obtained results led to a complete interpretation of the photophysics of adenine and derivatives, both under jet-cooled conditions and in solution, within a three-state model. The ultrafast subpicosecond fluorescence decay measured in adenine is attributed to the low-lying conical intersection (gs/pipi* La)(CI), reached from the initially populated 1(pipi* La) state along a path which is found to be barrierless only in 9H-adenine…

Quantitative Biology::BiomoleculesMolecular StructurePhotochemistryChemistryAdeninePhysicsOrganic ChemistryMolecular ConformationAb initioGeneral ChemistryConical intersectionPhotochemistryTautomerMolecular physicsPotential energyCatalysisTransition stateNucleobasePhysical PhenomenaModels ChemicalAb initio quantum chemistry methodsThermodynamicsGround stateChemistry - A European Journal
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Effect of opsin on the shape of the potential energy surfaces at the conical intersection of the Rhodopsin chromophore

2008

Abstract In order to disentangle the role of the protein in the control of the photoisomerization of the chromophore of the visual pigment Rhodopsin, we compare the structure of the ground and excited potential energy surfaces of gas-phase and opsin-embedded 11- cis retinal chromophore at the corresponding (lowest energy) conical intersections. It is shown that, along the branching plane, the asymmetric opsin environment destabilizes one of the ground state relaxation channels emerging from the conical intersection. This suggests that opsin promotes the formation of the product (bathorhodopsin) via enhanced decay probability along the all- trans exit channel. In contrast, in the gas-phase n…

Quantitative Biology::BiomoleculesOpsinbiologyPhotoisomerizationChemistryGeneral Physics and AstronomyConical intersectionChromophorePhotochemistryPotential energyMolecular physicsRhodopsinExcited statebiology.proteinPhysical and Theoretical ChemistryGround stateChemical Physics
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Molecular Basis of DNA Photodimerization: Intrinsic Production of Cyclobutane Cytosine Dimers

2008

Based on CASPT2 results, the present contribution establishes for the first time that cytosine photodimer formation (CC) is mediated along the triplet and singlet manifold by a singlet-triplet crossing, (T1/S0)X, and by a conical intersection, (S1/S0)CI, respectively. The former can be accessed in a barrierless way from a great variety of photochemical avenues and exhibits a covalent single bond between the ethene C6-C6' carbon atoms of each monomer. The efficiency of the stepwise triplet mechanism, however, would be modulated by the effectiveness of the intersystem crossing mechanism. The results provide the grounds for the understanding of the potential photogenotoxicity of endogenous and…

Quantitative Biology::BiomoleculesPhotochemistryUltraviolet RaysChemistryDNAGeneral ChemistryConical intersectionPhotochemistryBiochemistryCatalysisCyclobutaneCytosinechemistry.chemical_compoundColloid and Surface ChemistryIntersystem crossingPyrimidine DimersCovalent bondExcited stateNucleic Acid ConformationSingle bondSinglet stateDimerizationCytosineDNA DamageJournal of the American Chemical Society
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Pore structure and function of synthetic nanopores with fixed charges: tip shape and rectification properties

2011

We present a complete theoretical study of the relationship between the structure (tip shape and dimensions) and function (selectivity and rectification) of asymmetric nanopores on the basis of previous experimental studies. The theoretical model uses a continuum approach based on the Nernst-Planck equations. According to our results, the nanopore transport properties, such as current-voltage (I-V) characteristics, conductance, rectification ratio, and selectivity, are dictated mainly by the shape of the pore tip (we have distinguished bullet-like, conical, trumpet-like, and hybrid shapes) and the concentration of pore surface charges. As a consequence, the nanopore performance in practical…

Quantitative Biology::BiomoleculesPhysics::Biological PhysicsNanostructureMaterials scienceMechanical EngineeringConductanceBioengineeringNanotechnologyGeneral ChemistryConical surfaceStructure and functionQuantitative Biology::Subcellular ProcessesNanoporeRectificationMechanics of MaterialsChemical physicsGeneral Materials ScienceSurface chargeNanoporous membraneElectrical and Electronic EngineeringNanotechnology
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Unified model for the ultrafast decay of pyrimidine nucleobases.

2006

Ultrafast decay processes detected after absorption of UV radiation in gas-phase pyrimidine nucleobases uracil, thymine, and cytosine are ascribed to the barrierless character of the pathway along the low-lying 1(pipi*) hypersurface connecting the Franck-Condon region with an out-of-plane distorted ethene-like conical intersection with the ground state. Longer lifetime decays and low quantum yield emission are on the other hand related to the presence of a 1(pipi*) state planar minimum on the S1 surface and the barriers to access other conical intersections. A unified model for the three systems is established on the basis of accurate multiconfigurational CASPT2 calculations, whereas the ef…

Quantitative Biology::BiomoleculesPyrimidineQuantum yieldUracilUnified ModelConical intersectionPyrimidine NucleosidesSurfaces Coatings and FilmsNucleobaseThyminechemistry.chemical_compoundchemistryModels ChemicalMaterials ChemistryPhysics::Chemical PhysicsPhysical and Theoretical ChemistryAtomic physicsGround stateThe journal of physical chemistry. B
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Singlet-Triplet States Interaction Regions in DNA/RNA Nucleobase Hypersurfaces.

2010

The present study provides new insight into the intrinsic mechanisms for the population of the triplet manifold in DNA nucleobases by determining, at the multiconfigurational CASSCF/CASPT2 level, the singlet-triplet states crossing regions and the main decay paths for their lowest singlet and triplet states after near-UV irradiation. The studied singlet-triplet interacting regions are accessible along the minimum energy path of the initially populated singlet bright (1)ππ* state. In particular, all five natural DNA/RNA nucleobases have, at the end of the main minimum energy path and near a conical intersection of the ground and (1)ππ* states, a low-energy, easily accessible, singlet-triplet…

Quantitative Biology::Biomoleculeseducation.field_of_studyChemistryGuaninePopulationConical intersectionQuantitative Biology::GenomicsComputer Science ApplicationsNucleobaseThyminechemistry.chemical_compoundExcited stateSinglet fissionSinglet statePhysical and Theoretical ChemistryAtomic physicseducationJournal of chemical theory and computation
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Electronic structure, lattice dynamics and thermodynamic stability of paramelaconite Cu4O3

2014

Abstract An ab initio study of the electronic structure, lattice dynamic and thermodynamic properties of paramelaconite Cu 4 O 3 is reported. The insulating, mixed-valence character of Cu 4 O 3 is elucidated by analyzing the band structure and the spin-orbital symmetry of the Cu-3 d hole states. Exchange coupling constants between Cu 2+ ions are computed which confirm the frustrated antiferromagnetism of the spin lattice. The lattice dynamics is studied from first principles and main features of the vibrational spectrum are assigned to the different chemical species Cu + , Cu 2+ and O. The thermodynamic stability of Cu 4 O 3 is investigated by calculating the free energy of the decompositio…

Quantitative Biology::Neurons and CognitionChemistryAb initioThermodynamicsEmpty lattice approximationElectronic structureParamelaconiteengineering.materialCondensed Matter PhysicsAb initio quantum chemistry methodsengineeringPhysical chemistryAntiferromagnetismCondensed Matter::Strongly Correlated ElectronsGeneral Materials ScienceChemical stabilityElectronic band structureMaterials Chemistry and Physics
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Stabilization of the rhombohedral phase in LiZr2(PO4)3 by thermal quenching

1993

Abstract Two LiZr2(PO4)3 samples, which show rhombohedral and monoclinic symmetries, have been studied by powder XRD and MAS-NMR (31P and 7Li) techniques. In the monoclinic sample phosphorus occupies three crystallographic sites and lithium is preferentially placed in M2 environment. When the samples are subjected to successive heating-quenching treatments, the rhombohedral phase is not appreciably modified while the monoclinic phase is transformed into the rhombohedral one. In the quenched samples only one site for phosphorus has been detected and occupancy of lithium in the more symmetric M1 site is favoured. After the thermal treatments, when the samples are stored at room temperature fo…

QuenchingMagic angleIsotopes of lithiumchemistry.chemical_elementGeneral ChemistryCondensed Matter Physicschemistry.chemical_compoundCrystallographychemistryZirconium phosphatePhase (matter)General Materials ScienceLithiumPhosphorus-31 NMR spectroscopyMonoclinic crystal systemSolid State Ionics
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Multiple teeth replacement with endosseous one-piece yttrium-stabilized zirconia dental implants

2012

Objectives: The purpose of this study is to clinically and radiographically evaluate survival and success rate of multiple zirconia dental implants positioned in each patient during a follow-up period of at least 12 months up to 48 months. Study Design: Eight patients were treated for multiple edentulism with 29 zirconia dental implants. All implants received immediate temporary restorations and 6 months after surgery were definitively restored. 6 months to 4 years after implant insertion, a clinical-radiographic evaluation was performed in order to estimate peri-implant tissues health and peri-implant marginal bone loss. Results: Survival rate within follow-up period was therefore 100%. Th…

RadiographyDentistryOdontologíamedicineDental Prosthesis DesignHumansYttriumGeneral DentistrySurvival rateAgedDental ImplantsEdentulismBone preservationbusiness.industryDental Implantation EndosseousMiddle Agedmedicine.disease:CIENCIAS MÉDICAS [UNESCO]Ciencias de la saludProsthesis FailureDental Prosthesis DesignOtorhinolaryngologyUNESCO::CIENCIAS MÉDICASResearch-ArticleSurgeryZirconiumImplantOral SurgerybusinessAbutment (dentistry)
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Helminth communities of owls (strigiformes) indicate strong biological and ecological differences from birds of prey (accipitriformes and falconiform…

2012

We compared the helminth communities of 5 owl species from Calabria (Italy) and evaluated the effect of phylogenetic and ecological factors on community structure. Two host taxonomic scales were considered, i.e., owl species, and owls vs. birds of prey. The latter scale was dealt with by comparing the data here obtained with that of birds of prey from the same locality and with those published previously on owls and birds of prey from Galicia (Spain). A total of 19 helminth taxa were found in owls from Calabria. Statistical comparison showed only marginal differences between scops owls (Otus scops) and little owls (Athene noctua) and tawny owls (Strix aluco). It would indicate that all owl …

Range (biology)ScienceVeterinary MicrobiologyZoologyOtus scopsBiologyGeneralist and specialist speciesMicrobiologyPredationbiology.animalHelminthsAnimalsCommunity AssemblyBiologyCommunity StructureFalconiformesPhylogenyMultidisciplinaryEcologyEcologyBird DiseasesQRSpecies diversitybiology.organism_classificationStrigiformesVeterinary ParasitologyStrix alucoStrigiformesItalyCommunity EcologyVeterinary DiseasesAccipitriformesMedicineParasitologyVeterinary ScienceHelminthiasis AnimalZoologyResearch ArticleHelminthologyPLoS ONE
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