Search results for "CPM"

showing 10 items of 25 documents

Increased serum miR-193a-5p during non-alcoholic fatty liver disease progression: Diagnostic and mechanistic relevance

2022

Background & Aims Serum microRNA (miRNA) levels are known to change in non-alcoholic fatty liver disease (NAFLD) and may serve as useful biomarkers. This study aimed to profile miRNAs comprehensively at all NAFLD stages. Methods We profiled 2,083 serum miRNAs in a discovery cohort (183 cases with NAFLD representing the complete NAFLD spectrum and 10 population controls). miRNA libraries generated by HTG EdgeSeq were sequenced by Illumina NextSeq. Selected serum miRNAs were profiled in 372 additional cases with NAFLD and 15 population controls by quantitative reverse transcriptase PCR. Results Levels of 275 miRNAs differed between cases and population controls. Fewer differences were seen wi…

SCORING SYSTEMCPM counts per millionAUROC area under the receiver operating characteristicRC799-869AST aspartate aminotransferaseMicroRNA; Non-alcoholic fatty liver disease; Biomarker; SequencingTGF-β transforming growth factor-betaGastroenterologySTEATOHEPATITISLiver disease0302 clinical medicineFibrosismiRNA microRNAlogFC log2 fold changeFIBROSISImmunology and AllergySequencing0303 health scienceseducation.field_of_studyNAS NAFLD activity scoremedicine.diagnostic_testFatty liverGastroenterologyGTEx Genotype-Tissue ExpressionMicroRNADiseases of the digestive system. Gastroenterology3. Good healthReal-time polymerase chain reactionBiomarker MicroRNA Non-alcoholic fatty liver disease SequencingLiver biopsyACIDBiomarker (medicine)030211 gastroenterology & hepatologyLife Sciences & BiomedicineResearch ArticleEXPRESSIONmedicine.medical_specialtyNAFLD non-alcoholic fatty liver diseaseNASH non-alcoholic steatohepatitisPopulationGastroenterology and HepatologySAF steatosis–activity–fibrosisVALIDATIONER endoplasmic reticulum03 medical and health sciencescDNA complementary DNAInternal medicineALT alanine aminotransferaseGastroenterologiInternal MedicinemedicineNAFL non-alcoholic fatty liverALGORITHMFIB-4 fibrosis-4education030304 developmental biologyPCA principal component analysisScience & TechnologyGastroenterology & HepatologyHepatologybusiness.industryBiomarkerFC fold changemedicine.diseaseBiomarker; MicroRNA; Non-alcoholic fatty liver disease; Sequencingdigestive system diseasesFLIP fatty liver inhibition of progressionCt cycle thresholdSteatosisqPCR quantitative PCRbusinessNon-alcoholic fatty liver disease
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Solid state nuclear magnetic resonance spectroscopy as a tool to characterize natural organic matter and soil samples. The basic principles

2007

Basic principles of solid state nuclear magnetic resonance spectroscopy (SS-NMR) are presented here. This paper is not pretending to provide an exhaustive treatment of the basics of SS-NMR. However, it will give an overview of the main applications in the characterization of environmental systems and will describe the problems related to the acquisition of quantitative solid state NMR spectra.

Settore AGR/13 - Chimica AgrariaNatural Organic Matter Solid State NMR CPMAS 13C-NMR Environmental Systems
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Report on cpm 2011 and stringmasters 2011

2011

Settore INF/01 - InformaticaReport CPM2011 StringMaster
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Spectroscopic and conformational properties of size-fractions separated from a lignite humic acid

2007

Abstract A lignite humic acid (HA) was fractionated by preparative high performance size-exclusion chromatography (HPSEC) in seven different size-fractions. The size-fractions were characterized by cross polarization (CP) magic angle spinning (MAS) 13 C NMR spectroscopy and a further analytical HPSEC elution under UV and fluorescence detection. The alkyl hydrophobic components mainly distributed in the largest molecular-size-fraction, whereas the amount of oxidized carbons increased with decreasing size of fractions. Cross polarization time ( T CH ) and proton spin-lattice relaxation time in the rotating frame ( T 1 ρ (H)) were measured from variable contact time (VCT) experiments. The bulk…

Steric effectsMagnetic Resonance SpectroscopyEnvironmental EngineeringHealth Toxicology and MutagenesisSettore AGR/13 - Chimica AgrariaAnalytical chemistryFractionationLigninFluorescence spectroscopyMagic angle spinningEnvironmental ChemistryHumic acidParticle SizeHumic SubstancesAlkylchemistry.chemical_classificationChemistrySpectrum AnalysisPublic Health Environmental and Occupational HealthGeneral MedicineGeneral ChemistryCarbon-13 NMRPollutionNMR spectra databaseHumic substancesSize-fractionationHPSECCPMAS-13C NMRUV and fluorescence spectrophotometryEnvironmental PollutantsEnvironmental MonitoringChemosphere
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Fast offline data reduction of laser ablation MC-ICP-MS Sr isotope measurements: Via an interactive Excel-based spreadsheet 'SrDR'

2020

Strontium isotopes are applied to a wide range of scientific fields and to different types of sample materials, providing valuable information foremost about provenance and age, but also on diagenetic processes and mixing relationships between different Sr reservoirs. The development of in-situ analytical techniques, such as laser ablation ICP-MS, has improved our understanding of Sr isotope variability in several field of application, because of the possibility to discriminate small-scale changes and their spatial distribution. However, large outputs of Sr isotope data are produced by laser ablation MC-ICP-MS systems, which necessitate of multiple offline steps to correct and assess the da…

StrontiumLaser ablationIsotopeMc icp ms010401 analytical chemistrychemistry.chemical_elementMineralogy010502 geochemistry & geophysics01 natural sciencesIsotopes of strontium0104 chemical sciencesAnalytical Chemistrymc-icpmchemistrylaser ablationEnvironmental sciencedata reductionstrontiumisotopeSpectroscopy0105 earth and related environmental sciencesData reduction
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Adsorption of dissolved organic matter on clay minerals as assessed by infra-red, CPMAS 13C NMR spectroscopy and low field T1 NMR relaxometry

2011

Abstract Dissolved organic matter (DOM) is a very important environmental constituent due to its role in controlling factors for soil formation, mineral weathering and pollutant transport in the environment. Prediction of DOM physical–chemical properties is achieved by studying its chemical structure and spatial conformation. In the present study, dissolved organic matter extracted from compost obtained from the organic fraction of urban wastes (DOM-P) has been analysed by FT-IR, CPMAS 13C NMR spectroscopy and 1H T1 NMR relaxometry with fast field cycling (FFC) setup. While the first two spectroscopic techniques revealed the chemical changes of dissolved organic matter after adsorption eith…

T1 NMR relaxometryRelaxometryMineralCompostDOM; CPMAS 13C NMR; T1 NMR relaxometrySettore AGR/13 - Chimica Agrariaengineering.materialFT-IRchemistry.chemical_compoundMontmorilloniteAdsorptionchemistryGeochemistry and PetrologyEnvironmental chemistryDissolved organic carbonCPMAS 13C NMRengineeringOrganic chemistryKaoliniteDissolved organic matterRelaxometryClay mineralsDOMOrganic Geochemistry
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CHARACTERIZATION OF CHEMICAL AND PHYSICAL PROPERTIES OF BIOCHAR FOR ENERGY PURPOSES AND ENVIRONMENTAL RESTORATION

2014

Biochar production processes as well as its various applications provide numerous benefits to both environment and economy (Lehmann et al., 2006; Basu, 2010). However, understanding the physicochemical structure of this valuable product has to be improved in order to be able to obtain the aforementioned benefits and to avoid environmental costs. In this study, chicken or poultry manure (PM) was chosen as feedstock for biochar preparation. This biomass is traditionally used by farmers as an effective organic fertilizer (Chan et al., 2008). Indeed, it is considered a valuable source for readily available plant nutrients, such as N, P, K and other micronutrients (Huang et al., 2011). Notwithst…

TGAporositypoultry manureSettore AGR/13 - Chimica AgrariaCPMAS 13C NMRbiocharDTGNMR relaxometry SEM metal adsorption isothermaromaticitythermal stabilitychar
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In-situ high spatial resolution LA-MC-ICPMS 230Th/U dating enables detection of small-scale age inversions in speleothems

2017

Abstract We present an in-situ method for Th and U isotope measurements by laser ablation multi-collector inductively coupled plasma mass spectrometry (LA-MC-ICPMS) to determine possible age inversions of stalagmites, using a 213 nm Nd:YAG laser connected to an MC-ICPMS. Due to the low ion beam intensity of 230 Th (20–120 counts per second, cps), we carefully optimized the operating parameters to get highest possible ion beam intensities, i.e., laser fluence (25 J cm −2 ), spot size (110 μm), pulse repetition rate (20 Hz), scan speed (4 μm s −1 ), integration time (1000 s), and He and Ar gas flow (∼0.9 L min −1 and ∼0.6 L min −1 respectively). A precision (2 relative standard error, 2RSE) o…

Time delay and integrationIon beamAnalytical chemistryMineralogy010502 geochemistry & geophysics01 natural scienceslaw.inventionGeochemistry and PetrologylawImage resolutionInductively coupled plasma mass spectrometry0105 earth and related environmental sciencesEarth-Surface ProcessesReproducibilityLaser ablationChemistry010401 analytical chemistrylcsh:QE1-996.5GeologySecular equilibriumGeotechnical Engineering and Engineering GeologyLaserSpeleothemLaser ablation0104 chemical scienceslcsh:Geology230Th/U datingGeophysicsMC-ICPMS
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Interaction of a Recombinant Prion Protein with Organo-Mineral Complexes as Assessed by FT-IR and CPMAS 13C NMR Analysis

2010

Prion proteins are considered as the main agents for the Transmissible Spongiform Encephalopathies (TSE). The misfolded form, PrP Sc , which is also indicated as the etiological agent for TSE, exhibits high resistance to degradation in environmental processes. Soil contamination by prion proteins is a real environmental issue since contaminated soils can become potential reservoir and diffuser for TSE infectivity. In this work, the interaction of prion protein with organo- mineral complexes was studied by using a recombinant non pathogenic prion protein and a model soil system. This latter was represented by a soil manganese mineral coated with polymerized catechol. FT-IR spectra showed ami…

chemistry.chemical_classificationCatecholBirnessiteStereochemistryanimal diseasesSoil Organo-Mineral ComplexeSettore AGR/13 - Chimica Agrariachemistry.chemical_elementNuclear magnetic resonance spectroscopyManganeseCarbon-13 NMRnervous system diseaseslaw.inventionFT-IRTSE diseasechemistry.chemical_compoundPrion proteinchemistryBiochemistryPolymerizationlawCPMAS 13C NMRRecombinant DNAPrion protein TSE diseases Soil Organo-Mineral Complexes FT-IR CPMAS 13C NMRAlkylThe Open Magnetic Resonance Journal
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Dynamics of cross polarization in solid state nuclear magnetic resonance experiments of amorphous and heterogeneous natural organic substances

2008

Nuclear magnetic resonance (NMR) experiments on carbon-13 in the solid state were done with cross polarization (CP) and magic angle spinning (MAS) in order to overcome the low NMR sensitivity of (13)C and the chemical shift anisotropy, respectively. In the present research, CPMAS (13)C-NMR spectra were collected by modulating the contact time needed for cross polarization (variable contact times experiments, VCT) on two different humic acids (a soil-HA and a coal-HA). VCT data were fitted by a model containing either a monotonic or a non-monotonic cross polarization term. The non-monotonic model, which fitted the experimental results better than the monotonic one, provided two cross-polariz…

chemistry.chemical_classificationCross polarizationDynamics (mechanics)Spectral lineAnalytical ChemistryAmorphous solidSolid-state nuclear magnetic resonancechemistryChemical physicsMagic angle spinningOrganic chemistryAnisotropyNMR CPMAS Humic matterAlkyl
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