Search results for "CTD"

showing 10 items of 101 documents

Finite automata with advice tapes

2013

We define a model of advised computation by finite automata where the advice is provided on a separate tape. We consider several variants of the model where the advice is deterministic or randomized, the input tape head is allowed real-time, one-way, or two-way access, and the automaton is classical or quantum. We prove several separation results among these variants, demonstrate an infinite hierarchy of language classes recognized by automata with increasing advice lengths, and establish the relationships between this and the previously studied ways of providing advice to finite automata.

FOS: Computer and information sciencesTheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGESTheoryofComputation_COMPUTATIONBYABSTRACTDEVICESFormal Languages and Automata Theory (cs.FL)Computer Science - Formal Languages and Automata TheoryNonlinear Sciences::Cellular Automata and Lattice GasesComputer Science::Formal Languages and Automata Theory
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Global distributions of diazotrophs abundance and biomass - Depth integrated values computed from a collection of source datasets - Contribution to t…

2013

The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedente…

Go-Flo bottlesSalinityCAIBEX-IRV Kilo MoanaDiazotrophs total biomass as carbonUniform resource locator link to source data fileNitrateRichelia carbon per cellCTD/RosetteLatitude of eventNiskinRoger A RevelleTemperature waterCalculatedtop minbiomass as carbonTrichodesmium biomass as carbontotalbottom maxCTD Seabirdareal concentrationMultiple investigationsTemperatureDepth top/minRichelia abundance cellsCTD RosetteSeabirdCalothrixRoger A. RevelleTrichodesmiumTrichodesmium carbon per trichomeEarth System ResearchRichelia abundanceCAIBEX-IICalothrix abundanceMARine Ecosystem Model Intercomparison Project MAREMIPDiazotrophsLongitude of eventRichelia associated speciesSample methodIronChlorophyll total areal concentrationBottle NiskinwaterTrichodesmium abundance free trichomesMARine Ecosystem Model Intercomparison Project (MAREMIP)PhosphateSarmiento de GamboaSample commentCAIBOXUniform resource locator/link to source data filetotal biomass as carbonCalothrix carbon per cellHeterocyst biomassGo Flo bottlescoloniesDate/Time of eventChlorophyll totalTrichodesmium abundance totalRicheliaDEPTH waterTrichodesmium abundance coloniesMP-6biomassBottleDepthEvent labelDate Time of eventCAIBEX IIcarbon per cellMeasured at sea surfacefree trichomesMP-9CTDCalothrix abundance cellscarbon per trichomeTrichodesmium abundanceCalothrix associated speciesMP 9MP 6CAIBEX IcellsDepth bottom/maxassociated speciesHeterocyst
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Global distributions of diazotrophs nitrogen fixation rates - Depth integrated values computed from a collection of source datasets - Contribution to…

2013

The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedente…

Go-Flo bottlesSalinityCAIBEX-ITrichodesmium nitrogen fixation rateRV Kilo MoanaUniform resource locator link to source data fileNitrateCTD/RosetteLatitude of eventNiskinAlisRoger A RevelleTemperature waterwhole seawatertop minCalculatedbottom maxareal concentrationNitrogen fixation rateTemperatureDepth top/minCTD RosetteUnicellular cyanobacteria nitrogen fixation rateTrichodesmiumRoger A. RevelleNitrogen fixation rate integrated per dayEarth System ResearchMooring (long time)CAIBEX-IIMARine Ecosystem Model Intercomparison Project MAREMIPDiapalis 3Longitude of eventDiapalis 4Diapalis 5Sample methodIronwaterChlorophyll total areal concentrationBottle NiskinWater pumpMARine Ecosystem Model Intercomparison Project (MAREMIP)PhosphateWater sampleSarmiento de GamboaSample commentCAIBOXDiapalis 6Diapalis 7Uniform resource locator/link to source data fileDiapalis 9Go Flo bottlesNitrogen fixation rate whole seawaterintegrated per dayUnicellular cyanobacteriaDate/Time of eventChlorophyll totalMooring long timeDiapalis-7Diapalis-9Diapalis-3Diapalis-4Diapalis-5Diapalis-6DEPTH waterMP-6BottleDepthEvent labelDate Time of eventCAIBEX IIMeasured at sea surfaceMP-9MP 9MP 6CAIBEX IDepth bottom/maxHeterocyst nitrogen fixation rateHeterocyst
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E26The effects of LIPUS on ctDNA release in the medium of NSCLC cell lines

2017

Low Intensity Pulsed Ultrasound (LIPUS) application has been shown to have an encouraging effect in inducing a transient pore formation through cellular membranes. This permeability condition has been demonstrated to be useful in enhancing gene and drug delivery. Nowadays, in the management of NSCLC patients, the use of liquid biopsy has entered the clinical practice. One of the main limits in the analysis of circulating tumor DNA is the low concentration rate of nucleic acids in body fluids. Ultrasound stimulation (US) has been recently demonstrated to be effective for the release of specific circulating tumor biomarkers in many mouse models. We demonstrated the role of US in inducing the …

LIPUS ctDNA NSCLC cell lines
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Global distributions of diazotrophs Gamma-A nifH genes abundance - Depth integrated values computed from a collection of source datasets - Contributi…

2013

The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedente…

M60/5SalinityChlorophyll aDiazotrophs total biomass as carbonUniform resource locator link to source data fileNitrateCTD/RosetteLatitude of eventNiskinM55 1Temperature waterCalothrix abundance expressed in number of nifH gene copiesratio expressed in mass of carbon per amount of nifH gene copiesCalculatedtop minUnicellular cyanobacteria-B biological trait ratio expressed in mass of carbon per amount of nifH gene copiesCD132biomass as carbonTrichodesmium biomass as carbonM55/1bottom maxCTD SeabirdTemperatureDepth top/minCTD RosetteSeabirdRichelia biological trait ratio expressed in mass of carbon per amount of nifH gene copiesCalothrixSO187 2Unicellular cyanobacteria-B abundance expressed in number of nifH gene copiesTrichodesmiumEarth System ResearchMARine Ecosystem Model Intercomparison Project MAREMIPDiazotrophsLongitude of eventRichelia associated speciesSample methodCalothrix biological trait ratio expressed in mass of carbon per amount of nifH gene copiesIronBottle NiskinwaterIn situ pumpMARine Ecosystem Model Intercomparison Project (MAREMIP)Unicellular cyanobacteria-C abundance expressed in number of nifH gene copiesPhosphateWater sampleSample commentUnicellular cyanobacteria biomassUniform resource locator/link to source data filetotal biomass as carbonHeterocyst biomassUnicellular cyanobacteriaProteobacteriaDate/Time of eventMeteor 1986Richelia abundance expressed in number of nifH gene copiesUnicellular cyanobacteria CUnicellular cyanobacteria Bbiological traitSO187/2RicheliaUnicellular cyanobacteria ADEPTH waterbiomassTrichodesmium abundance expressed in number of nifH gene copiesMeteor (1986)BottleDepthEvent labelDate Time of eventTrichodesmium biological trait ratio expressed in mass of carbon per amount of nifH gene copiesUnicellular cyanobacteria-C biological trait ratio expressed in mass of carbon per amount of nifH gene copiesMeasured at sea surfaceCTDCalothrix associated speciesCharles DarwinSonneabundance expressed in number of nifH gene copiesM60 5Depth bottom/maxUnicellular cyanobacteria-A abundance expressed in number of nifH gene copiesassociated speciesProteobacteria abundance expressed in number of nifH gene copiesHeterocyst
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A de novo heterozygous mutation in KCNC2 gene implicated in severe developmental and epileptic encephalopathy

2020

Abstract An increasing number of developmental and epileptic encephalopathies have been correlated with variants of ion channel genes, and in particular of potassium channels genes, such as KCNA1, KCNA2, KCNB1, KCNQ2, KCTD7 and KCNT1. Here we report a child with an early severe developmental and epileptic encephalopathy, spastic tetraplegia, opisthotonos attacks. The whole exome sequencing showed the de novo heterozygous variant c.1411G > C (p.Val471Leu) in the KCNC2 gene. Although this is, to our knowledge, the first case of encephalopathy associated with a KCNC2 gene variant, and further confirmatory studies are needed, previous preclinical and clinical evidence seems to suggest that KCNC…

MaleKCNC2 geneKCTD7EncephalopathyBiologyEpilepsyGeneticsmedicineHumansExomeEEGChildGeneExomeSpastic tetraplegiaGenetics (clinical)Exome sequencingGeneticsEpilepsyKv3.2ElectroencephalographyDevelopmental and epileptic encephalopathieGeneral Medicinemedicine.diseaseKCNC2Shaw Potassium ChannelsNGSMutationEuropean Journal of Medical Genetics
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Clinical utility of plasma-based digital next-generation sequencing in patients with advance-stage lung adenocarcinomas with insufficient tumor sampl…

2019

[Background] Approximately 30% of tumor biopsies from patients with advanced-stage lung adenocarcinomas yield insufficient tissue for successful molecular subtyping. We have analyzed the clinical utility of next-generation sequencing (NGS) of cell-free circulating tumor DNA (ctDNA) in patients with inadequate tumor samples for tissue genotyping. [Patients and methods] We conducted the study in a multi-institutional prospective cohort of clinically unselected patients with advanced-stage lung adenocarcinomas with insufficient tissue for EGFR, ALK or ROS1 genotyping across 12 Spanish institutions (n = 93). ctDNA NGS was carried out by Guardant Health (Guardant360, Redwood City, CA), using a h…

MaleLung adenocarcinoma0301 basic medicineOncologyLung NeoplasmsCirculating Tumor DNA0302 clinical medicineco-occurring genomic alterationsGenotypeProspective StudiesNeoplasm MetastasisPrecision MedicineStage (cooking)Prospective cohort studyInsufficient tissueAged 80 and overactionable genomic alterationsHazard ratioHigh-Throughput Nucleotide SequencingDNA NeoplasmGenomicsinsufficient tissueHematologyMiddle AgedActionable genomic alterationsPrognosisSurvival Ratemedicine.anatomical_structureOncology030220 oncology & carcinogenesisFemaleAdultmedicine.medical_specialtydigital next-generation sequencingAdenocarcinoma of Lung03 medical and health sciencesProto-Oncogene ProteinsInternal medicineBiomarkers TumormedicineROS1HumansLung cancerGenotypingAgedDigital next-generation sequencingLungGenome Humanbusiness.industryctDNACo-occurring genomic alterationslung adenocarcinomamedicine.disease030104 developmental biologyMutationbusinessFollow-Up StudiesAnnals of Oncology
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A fast heuristic for solving the D1EC coloring problem

2010

In this paper we propose an efficient heuristic for solving the Distance-1 Edge Coloring problem (D1EC) for the on-the-fly assignment of orthogonal wireless channels in wireless as soon as a topology change occurs. The coloring algorithm exploits the simulated annealing paradigm, i.e., a generalization of Monte Carlo methods for solving combinatorial problems. We show that the simulated annealing-based coloring converges fast to a sub optimal coloring scheme even for the case of dynamic channel allocation. However, a stateful implementation of the D1EC scheme is needed in order to speed-up the network coloring upon topology changes. In fact, a stateful D1EC reduces the algorithm’s convergen…

Mathematical optimization:QA Mathematics::QA75 Electronic computers. Computer science [Q Science]TheoryofComputation_COMPUTATIONBYABSTRACTDEVICESChannel allocation schemesHeuristic (computer science)Computer scienceSettore ING-INF/03 - Telecomunicazioni:T Technology (General) [T Technology]Topology (electrical circuits)Greedy coloringEdge coloringTheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGESStateful firewall:Q Science (General) [Q Science]TheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYConvergence (routing)Simulated annealing:TK Electrical engineering. Electronics Nuclear engineering [T Technology]Channel assignment Edge coloring Simulated annealing.MathematicsofComputing_DISCRETEMATHEMATICS
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Deciding properties of integral relational automata

1994

This paper investigates automated model checking possibilities for CTL* formulae over infinite transition systems represented by relational automata (RA). The general model checking problem for CTL* formulae over RA is shown undecidable, the undecidability being observed already on the class of Restricted CTL formulae. The decidability result, however, is obtained for another substantial subset of the logic, called A-CTL*+, which includes all ”linear time” formulae.

Model checkingDiscrete mathematicsClass (set theory)TheoryofComputation_COMPUTATIONBYABSTRACTDEVICESComputer scienceComputer Science::Software EngineeringDecidabilityUndecidable problemComputer Science::Multiagent SystemsCTL*TheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGESRelational calculusTheoryofComputation_LOGICSANDMEANINGSOFPROGRAMSComputer Science::Logic in Computer ScienceAutomata theoryTime complexityComputer Science::Formal Languages and Automata Theory
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Real-Time Vector Automata

2013

We study the computational power of real-time finite automata that have been augmented with a vector of dimension k, and programmed to multiply this vector at each step by an appropriately selected k×k matrix. Only one entry of the vector can be tested for equality to 1 at any time. Classes of languages recognized by deterministic, nondeterministic, and "blind" versions of these machines are studied and compared with each other, and the associated classes for multicounter automata, automata with multiplication, and generalized finite automata.

Nondeterministic algorithmDiscrete mathematicsMatrix (mathematics)TheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGESTheoryofComputation_COMPUTATIONBYABSTRACTDEVICESFinite-state machineDimension (vector space)Computer scienceMultiplicationNonlinear Sciences::Cellular Automata and Lattice GasesComputer Science::Formal Languages and Automata TheoryAutomatonPower (physics)
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