Search results for "Chromophores"

showing 10 items of 13 documents

Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein

2016

Many biological processes depend on detecting and responding to light. The response is often mediated by a structural change in a protein that begins when absorption of a photon causes isomerization of a chromophore bound to the protein. Pande et al. used x-ray pulses emitted by a free electron laser source to conduct time-resolved serial femtosecond crystallography in the time range of 100 fs to 3 ms. This allowed for the real-time tracking of the trans-cis isomerization of the chromophore in photoactive yellow protein and the associated structural changes in the protein.Science, this issue p. 725A variety of organisms have evolved mechanisms to detect and respond to light, in which the re…

0301 basic medicinePhotoreceptorsTime FactorsPhotoisomerizationLightProtein ConformationPhotochemistryPhotoreceptors MicrobialMYOGLOBINProtein structureMicrobialX-RAY-DIFFRACTIONPHOTOISOMERIZATIONMOTIONSchromophoresta116MultidisciplinarySPECTROSCOPYCrystallographyChemistryPhotochemical ProcessesTime resolved crystallographyTIMEMultidisciplinary SciencesPicosecondFemtosecondphotoactive proteinsScience & Technology - Other Topicsddc:500IsomerizationStereochemistryGeneral Science & TechnologyConjugated systemArticle03 medical and health sciencesBacterial ProteinsIsomerismEXCITATIONx-ray crystallographyPhotonsScience & TechnologyPHOTOCYCLEta114CHROMOPHOREta1182PATHWAYSChromophore030104 developmental biologyfree-electron laserssense organstrans-cis isomerization
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Theoretical study of the low‐lying states of trans‐1,3‐butadiene

1992

We present extensive ab initio calculations on the low‐lying electronic states of trans‐1,3‐butadiene within the multireference configuration interaction (MRCI) framework by selecting the configurations with a perturbative criterion. The X 1Ag ground state and 1 3Bu, 1 3Ag, 2 1Ag, and 1 1Bu valence excited states have been calculated at a fixed geometry. The results obtained are in good agreement with previous experimental and calculated values, and could help to understand polyene spectroscopy, photochemistry, and photophysics. The advantages of a MRCI method where the most important contributions to the total MRCI wave function, perturbatively selected, are treated variationally, and the …

ButadieneElectronic correlationChemistryGeneral Physics and AstronomyMultireference configuration interactionPolyenesConfiguration interactionChromophoresUNESCO::FÍSICA::Química físicaConfiguration InteractionComputational chemistryAb initio quantum chemistry methodsExcited stateButadiene ; Ab Initio Calculations ; Configuration Interaction ; Perturbation Theory ; Energy Levels ; Molecular Orbital Method ; Polyenes ; Biology ; ChromophoresEnergy LevelsPerturbation TheoryPerturbation theory (quantum mechanics)Molecular Orbital MethodPhysical and Theoretical ChemistryAtomic physicsGround stateWave function:FÍSICA::Química física [UNESCO]Ab Initio CalculationsBiology
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Ferrocene-quinoxaline Y-shaped chromophores as fascinating second-order NLO building blocks for long lasting highly active SHG polymeric films

2016

The first example of a Y-shaped ferrocene quinoxaline derivative with a surprisingly high and stable second harmonic generation (SHG) response in composite polymeric films is reported. The interesting quadratic hyperpolarizability values of different substituted Y-shaped chromophores are also investigated in solution by the EFISH technique.

Long lastingMaterials sciencesecond harmonic generation (SHG) responsComposite numberHyperpolarizability010402 general chemistryPhotochemistry01 natural sciencesSHGFerrocene - quinoxaline Y-shaped chromophoresInorganic Chemistrychemistry.chemical_compoundQuinoxalineta116chemophores010405 organic chemistrybusiness.industrysecond harmonic generationSecond-harmonic generationChromophoreEFISH technique0104 chemical sciencesFerrocenechemistrypolymeric filmsOptoelectronicsactive SHG polymeric fi lmsbusinessDerivative (chemistry)Dalton Transactions
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Photo-switching in a hybrid material made of magnetic layered double hydroxides intercalated with azobenzene molecules.

2014

Financial support from the EU (Projects HINTS FP7-263104-2 and SpinMol Advanced Grant ERC-2009-AdG-20090325), the Spanish Ministerio de Economia y Competitividad (Projects with FEDER cofinancing MAT 2009-14528-C02-01, MAT2011-22785, MAT2012-38567-C02-01, CTQ-2011-26507, Consolider-Ingenio in Molecular Nanoscience CSD2007-00010, Consolider-Ingenio 2010-Multicat CSD2009-00050, and Severo Ochoa Program SEV-2012-0267), Generalitat Valenciana (PROMETEO and ISIC-Nano programs), and VLC/Campus Microcluster "Functional Nanomaterials and Nanodevices" is gratefully acknowledged. C. M. G. thanks the Spanish MINECO for a Ramon y Cajal Fellowship (RYC-2012-10894). We also acknowledge P. Atienzar and J. …

Materials scienceINTERPLAYPhotoisomerizationIntercalation (chemistry)engineering.materialPhotochemistryCATIONIC AZOBENZENECOEXISTENCEchemistry.chemical_compoundMagnetizationQUIMICA ORGANICAPHOTOISOMERIZATIONGeneral Materials ScienceTEMPERATUREPRUSSIAN BLUEMechanical EngineeringMAGADIITELayered double hydroxideschemistryAzobenzeneMechanics of MaterialsSIMULATIONengineeringORGANIZACION DE EMPRESASHydroxideCHROMOPHORESHybrid materialAMPHIPHILIC AZOBENZENEIsomerizationAdvanced materials (Deerfield Beach, Fla.)
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Unmixing of human skin optical reflectance maps by Non-negative Matrix Factorization algorithm

2013

International audience; We present in this paper the decomposition of human skin absorption spectra with a Non-negative Matrix Factorization method. In doing so, we are able to quantify the relative proportion of the main chromophores present in the epidermis and the dermis. We present experimental results showing that we obtain a good estimate of melanin and hemoglobin concentrations. Our approach has been validated by analyzing the human skin absorption spectra in areas of healthy skin and areas affected by melasma on eight patients.

Materials science[ INFO.INFO-TS ] Computer Science [cs]/Signal and Image ProcessingAbsorption spectroscopyMelasmaHealth InformaticsHuman skin02 engineering and technology[ SPI.SIGNAL ] Engineering Sciences [physics]/Signal and Image processing01 natural sciencesNon-negative Matrix FactorizationNon-negative matrix factorizationMatrix decomposition010309 opticsSpectral reconstructionOpticsDermis[INFO.INFO-TS]Computer Science [cs]/Signal and Image Processing0103 physical sciences0202 electrical engineering electronic engineering information engineeringmedicine[INFO.INFO-IM]Computer Science [cs]/Medical ImagingChromophores quantificationOptical reflectance[ INFO.INFO-IM ] Computer Science [cs]/Medical Imagingintegumentary systembusiness.industrymedicine.diseasemedicine.anatomical_structureSignal Processing020201 artificial intelligence & image processingEpidermisSkin optical reflectance mapsbusinessBiological system[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processing
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Nanographenes: Ultrastable, Switchable, and Bright Probes for Super-Resolution Microscopy.

2019

Abstract Super‐resolution fluorescence microscopy has enabled important breakthroughs in biology and materials science. Implementations such as single‐molecule localization microscopy (SMLM) and minimal emission fluxes (MINFLUX) microscopy in the localization mode exploit fluorophores that blink, i.e., switch on and off, stochastically. Here, we introduce nanographenes, namely large polycyclic aromatic hydrocarbons that can also be regarded as atomically precise graphene quantum dots, as a new class of fluorophores for super‐resolution fluorescence microscopy. Nanographenes exhibit outstanding photophysical properties: intrinsic blinking even in air, excellent fluorescence recovery, and sta…

Materials sciencenanographenes010405 organic chemistrySuper-resolution microscopyGrapheneNanotechnologyGeneral ChemistryChromophore010402 general chemistry01 natural sciencesFluorescenceCatalysis0104 chemical scienceslaw.inventionlawQuantum dotSuper‐Resolution ImagingMicroscopyFluorescence microscopechromophoresfluorescenceblinkingResearch Articlessuper-resolution imagingResearch ArticleAngewandte Chemie (International ed. in English)
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Temperature- and pressure-dependent structural study of {Fe(pmd) 2[Ag(CN)2 ]2}n spin-crossover compound by neutron Laue diffraction

2014

The effect of pressure (up to 0.17GPa) on the spin-crossover compound {Fe(pmd)2[Ag(CN)2]2} n [orthorhombic isomer (II), pmd = pyrimidine] has been investigated by temperature- and pressure-dependent neutron Laue diffraction and magnetometry. The cooperative high-spin ↔ low-spin transition, centred at ca 180K at ambient pressure, is shifted to higher temperatures as pressure is applied, showing a moderate sensitivity of the compound to pressure, since the spin transition is displaced by ca 140KGPa-1. The space-group symmetry (orthorhombic Pccn) remains unchanged over the pressure-temperature (P-T) range studied. The main structural consequence of the high-spin to low-spin transition is the c…

Pressure-temperatureChemistryMetals and AlloysSpin transitionChromophoreChromophoresAtomic and Molecular Physics and OpticsSpin-crossover compoundsElectronic Optical and Magnetic MaterialsCrystallographyOctahedronSpin crossoverX-ray crystallographyMaterials ChemistryNeutronOrthorhombic crystal systemMagnetic materialsAmbient pressure
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The lineshape of the electronic spectrum of the green fluorescent protein chromophore, part I: gas phase.

2014

The vibronic spectra of the green fluorescent protein chromophore analogues p-hydroxybenzylidene-2,3-dimethylimidazolinone (HBDI) and 3,5-tert-butyl-HBDI (35Bu) are similar in the vacuum, but very different in water or ethanol. To understand this difference, we have computed the vibrationally resolved solution spectra of these chromophores, using the polarizable continuum model (PCM) to account for solvent effects on the (harmonic) potential energy surfaces (PES). In agreement with experiment, we found that the vibrational progression increases with the polarity of the solvent, but we could neither reproduce the broadening, nor the large difference between the absorption spectra of HBDI and…

Vibrational spectroscopyComputational chemistrygenetic structuresAbsorption spectroscopySpectrophotometry InfraredPopulationGreen Fluorescent ProteinsAnalytical chemistryElectronsPolarizable continuum modelMolecular physicsAbsorptionMolecular dynamicsBenzyl CompoundsVibronic spectroscopyGreen fluorescent proteinPhysical and Theoretical ChemistryeducationImidazolinesta116education.field_of_studyChemistryTemperatureChromophoreChromophoresPotential energyAtomic and Molecular Physics and OpticsQuantum TheoryThermodynamicsGasesSolvent effectsChemphyschem : a European journal of chemical physics and physical chemistry
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Non-linear optical, electrochemical and spectroelectrochemical properties of amphiphilic inner salt porphyrinic systems

2016

Three zwitterionic meso-substituted A3B- and AB2C-porphyrins containing one sulfonato alkylpyridinium substituent and three or two alkoxy-substituted phenyl groups were synthesized in good yield and fully characterized as to their physicochemical properties by a variety of techniques. This new series of inner salt donor-acceptor meso-substituted porphyrin derivatives were prepared for possible application as amphiphilic probes for membrane insertion in the area of combined second-harmonic and two-photon fluorescence cellular microscopy. To this end, the linear and nonlinear optical properties of the compounds were characterized, together with their electrochemical and spectroelectrochemica…

designInorganic chemistrySubstituentamphiphilic inner salt02 engineering and technology010402 general chemistryElectrochemistryPhotochemistry[ CHIM ] Chemical Scienceselectron-accepting moieties01 natural sciencesnon-linear optical propertychemistry.chemical_compoundAmphiphilechromophores[CHIM]Chemical SciencesMoleculeChemistryfrequency dispersionSecond-harmonic generationspectroelectrochemistrydipolar complexesGeneral Chemistry021001 nanoscience & nanotechnologyPorphyrinFluorescence0104 chemical sciences2nd-harmonic generationelectrochemistrymicroscopycharge-transferfluorescenceAbsorption (chemistry)hyper-rayleigh scattering0210 nano-technologyJournal of Porphyrins and Phthalocyanines
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Rapid one-step solvent-free acid-catalyzed mechanical depolymerization of pine sawdust to high-yield water-soluble sugars

2017

Abstract One-step absolute solvent-free acid-catalyzed mechanical depolymerization of pine sawdust (PSD) and commercially available α-cellulose to water-soluble sugars was carried out using ball milling. For comparison purposes, the commonly reported “solvent-free” mechanocatalytic depolymerization of lignocellulose method, which normally involves three steps (acid impregnation in solvent, vacuum drying, and mechanical depolymerization of lignocellulose), was performed. The 3,5-dinitrosalicylic acid (DNS) method was used to measure the total reducing sugar (TRS) of the obtained sugar solution, and major monosaccharides in the solution were analyzed by capillary electrophoresis (CE). More th…

hydrolyysisokeritmäntybiomassa020209 energylignin condensationlignin02 engineering and technologychemistry.chemical_compoundHydrolysisAcid-catalyzed mechanical depolymerization[CHIM.ANAL]Chemical Sciences/Analytical chemistryacid-catalyzed mechanical depolymerization0202 electrical engineering electronic engineering information engineeringLigninMonosaccharideOrganic chemistrychromophoresSugarWaste Management and Disposalta215ta218ComputingMilieux_MISCELLANEOUSchemistry.chemical_classificationbiomassRenewable Energy Sustainability and the EnvironmentDepolymerizationHydrolysisligniiniForestryPinus sylvestrisLignin condensationChromophoresReducing sugarSolventsawdustchemistryhydrolysissugarsYield (chemistry)[SDE]Environmental SciencesPine (Pinus sylvestris) sawdustAgronomy and Crop ScienceNuclear chemistrypine
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