Search results for "Community structure"
showing 10 items of 163 documents
k-Truss Decomposition for Modular Centrality
2018
There is currently much interest in identifying influential spreaders in complex networks due to many applications concerned, such as controlling the outbreak of epidemics and conducting advertisements for commercial products, and so on. A plethora of centrality measures have been proposed over the years based on the topological properties of networks. However, most of these classical centrality measures fail to select the most influential nodes in networks with a modular structure despite that it is an omnipresent property in real-world networks. Few authors have introduced centrality measures tailored to networks with community structure. In a recent work, we have shown that, in this case…
Importance of dispersal and thermal environment for mycorrhizal communities: lessons from Yellowstone National Park
2011
International audience; The relative importance of dispersal and niche restrictions remains a controversial topic in community ecology, especially for microorganisms that are often assumed to be ubiquitous. We investigated the impact of these factors for the community assembly of the root-symbiont arbuscular mycorrhizal fungi (AMF) by sampling roots from geothermal and nonthermal grasslands in Yellowstone National Park (YNP), followed by sequencing and RFLP of AMF ribosomal DNA. With the exception of an apparent generalist RFLP type closely related to Glomus intraradices, a distance-based redundancy analysis indicated that the AMF community composition correlated with soil pH or pH-driven c…
Overlapping community detection versus ground-truth in AMAZON co-purchasing network
2015
International audience; Objective evaluation of community detection algorithms is a strategic issue. Indeed, we need to verify that the communities identified are actually the good ones. Moreover, it is necessary to compare results between two distinct algorithms to determine which is most effective. Classically, validations rely on clustering comparison measures or on quality metrics. Although, various traditional performance measures are used extensively. It appears very clearly that they cannot distinguish community structures with different topological properties. It is therefore necessary to propose an alternative methodology more sensitive to the community structure variations in orde…
User and group networks on YouTube: A comparative analysis
2015
International audience; YouTube is the largest video-sharing social network where users (aka channels) can create links to any other users. Moreover, initially, users were allowed to create and join special groups of interest. Therefore, two types of online social networks can be defined. First, a user network where the nodes represent the users and the edges represent the social ties (friendship) between users. Second, a group network where the nodes represent the groups and the edges represent the social ties between groups, due to shared users. As the group network can be apprehended as the ground-truth overlapping community graph (where the nodes are the discovered communities and the l…
A stochastic approach for extracting community-based backbones
2022
Large-scale dense networks are very parvasive in various fields such as communication, social analytics, architecture, bio-metrics, etc. Thus, the need to build a compact version of the networks allowing their analysis is a matter of great importance. One of the main solutions to reduce the size of the network while maintaining its characteristics is backbone extraction techniques. Two types of methods are distinguished in the literature: similar nodes are gathered and merged in coarse-graining techniques to compress the network, while filter-based methods discard edges and nodes according to some statistical properties. In this paper, we propose a filtering-based approach which is based on…
Seasonal dynamics of the bacterial community in forest soils under different quantities of leaf litter
2010
International audience; Soil microbial communities play an important role in soil carbon functioning, particularly in forest ecosystems. Their variation in response to climate change may affect soil carbon processes, highlighting the importance of understanding how environmental factors affect microbial communities. This study aimed to determine to what extent an increase in the quantity of fresh litter may affect heterotrophic mineralization of organic carbon and bacterial community structure in soil and litter. A litter manipulation experiment was performed in situ in a temperate deciduous forest. Three treatments of fresh litter inputs were considered: litter exclusion, natural condition…
Comparison of different tillage systems in organic farming : effect of soil structure and organic matter repartition on soil micro-organisms and thei…
2009
Over the last decades, the surface traditionally ploughed has tended to decrease and replaced by shallow working tillage techniques without soil inversion, i.e., no tillage or reduced tillage with tines or discs. These techniques were mostly developed in conventional farming systems but nowadays they are also developed in organic farming systems. Nevertheless, these tillage techniques could generate crop nutrients deficiencies and a deterioration of soil structure, especially during the first years of their application. As the use of synthetic fertilizers is forbidden in organic farming, a decrease of the soil fertility could be very detrimental for crop growth. Indeed, soil micro-organisms…
Biogeographical patterns of soil bacterial communities.
2009
International audience; This study provides the first maps of variations in bacterial community structure on a broad scale based on genotyping of DNA extracts from 593 soils from four different regions of France (North, Brittany, South-East and Landes). Soils were obtained from the soil library of RMQS (Réseau de Mesures de la Qualité des Sols = French soil quality monitoring network). The relevance of a biogeographic approach for studying bacterial communities was demonstrated by the great variability in community structure and specific geographical patterns within and between the four regions. The data indicated that the distribution of bacterial community composition might be more relate…
Ecological role of mycotoxins produced by Fusarium graminearum : consequences of the presence of deoxynivalenol (DON) in crop residues on the soil mi…
2012
Fusarium graminearum is a plant pathogenic fungus, causing devastating disease “Fusarium head blight” (FHB) in cereals including wheat and maize. It also contaminates the grains with mycotoxins including deoxynivalenol (DON) which are toxic to human and animals. This disease has resulted in the serious losses in grain yield and quality. We established through a first bibliographic review that during off season fungus survives saprophytically on the crop residues (ecological habitat) and serves as primary inoculum for the next season crop. However, we noticed also that the literature was poor about the role mycotoxins could play in the establishment of F. graminearum in such a habitat. The m…
Soil fungal communities ecology: a biogeographical approach
2011
Affiche, résumé; International audience