Search results for "Computer Science - Distributed"
showing 2 items of 22 documents
Experimental Performance Evaluation of Cloud-Based Analytics-as-a-Service
2016
An increasing number of Analytics-as-a-Service solutions has recently seen the light, in the landscape of cloud-based services. These services allow flexible composition of compute and storage components, that create powerful data ingestion and processing pipelines. This work is a first attempt at an experimental evaluation of analytic application performance executed using a wide range of storage service configurations. We present an intuitive notion of data locality, that we use as a proxy to rank different service compositions in terms of expected performance. Through an empirical analysis, we dissect the performance achieved by analytic workloads and unveil problems due to the impedance…
SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors
2014
The maximal sensitivity of the Smith-Waterman (SW) algorithm has enabled its wide use in biological sequence database search. Unfortunately, the high sensitivity comes at the expense of quadratic time complexity, which makes the algorithm computationally demanding for big databases. In this paper, we present SWAPHI, the first parallelized algorithm employing Xeon Phi coprocessors to accelerate SW protein database search. SWAPHI is designed based on the scale-and-vectorize approach, i.e. it boosts alignment speed by effectively utilizing both the coarse-grained parallelism from the many co-processing cores (scale) and the fine-grained parallelism from the 512-bit wide single instruction, mul…