Search results for "Computer Science Application"

showing 10 items of 3998 documents

Post-Transcriptional Regulation of Iron Homeostasis in Saccharomyces cerevisiae

2013

Iron is an essential micronutrient for all eukaryotic organisms because it participates as a redox cofactor in a wide variety of biological processes. Recent studies in Saccharomyces cerevisiae have shown that in response to iron deficiency, an RNA-binding protein denoted Cth2 coordinates a global metabolic rearrangement that aims to optimize iron utilization. The Cth2 protein contains two Cx8Cx5Cx3H tandem zinc fingers (TZFs) that specifically bind to adenosine/uridine-rich elements within the 3' untranslated region of many mRNAs to promote their degradation. The Cth2 protein shuttles between the nucleus and the cytoplasm. Once inside the nucleus, Cth2 binds target mRNAs and stimulate…

572 Biochemistryalternative 3' end processingSaccharomyces cerevisiae ProteinsIronTristetraprolinSaccharomyces cerevisiaeSaccharomyces cerevisiaeReviewyeastCatalysisInorganic Chemistrylcsh:ChemistryCth1TristetraprolinmRNA decayGene Expression Regulation FungalCth2medicineRNA MessengerRnt1Physical and Theoretical Chemistry3' Untranslated RegionsMolecular BiologyTranscription factorlcsh:QH301-705.5SpectroscopyMessenger RNAalternative 3′ end processingbiologyThree prime untranslated regionOrganic ChemistryQR MicrobiologyGeneral MedicineIron deficiencymedicine.diseasebiology.organism_classificationComputer Science ApplicationsDNA-Binding ProteinsRibonucleotide reductaseBiochemistrylcsh:Biology (General)lcsh:QD1-999Cytoplasmalternative 3' end processingTranscription Factorspost-transcriptional regulationInternational Journal of Molecular Sciences
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Designing the 5G network infrastructure: a flexible and reconfigurable architecture based on context and content information

2018

5G networks will have to offer extremely high volumes of content, compared to those of today’s. Moreover, they will have to support heterogeneous traffics, including machine-to-machine, generated by a massive volume of Internet-of-Things devices. Traffic demands will be variable in time and space. In this work, we argue that all this can be achieved in a cost-effective way if the network is flexible and reconfigurable. We present the Flex5Gware network architecture, designed to meet the above requirements. Moreover, we discuss the links between flexibility and reconfigurability, on the one side, and context awareness and content awareness, on the other; we show how two of the building…

5G networkingStandardizationFlexible HW/SW platformComputer Networks and CommunicationsComputer scienceContext-awareneDistributed computinglcsh:TK7800-8360050801 communication & media studies02 engineering and technologylcsh:Telecommunication0508 media and communicationslcsh:TK5101-6720flexible HW/SW platforms 5G networking context-awareness; content-awareness; reconfigurability0202 electrical engineering electronic engineering information engineeringContext awarenessArchitecturecontent-awarenessNetwork architectureAccess networklcsh:Electronicsflexible HW/SW platforms05 social sciencescontext-awarenessReconfigurabilityControl reconfigurationComputer Science Applications1707 Computer Vision and Pattern Recognition020206 networking & telecommunicationsComputer Science ApplicationsContent-awareneSignal Processingreconfigurability5GEURASIP Journal on Wireless Communications and Networking
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Distributed radio map reconstruction for 5G automotive

2018

Se espera que los mapas de entorno radio sean una herramienta esencial para la optimización y gestión de recursos del 5G en vehículos. En este trabajo, consideramos el problema de la reconstrucción del mapa de entorno radio utilizando una red de sensores inalámbricos formada por nodos sensores en vehículos, nodos de acceso de una infraestructura de ciudad inteligente, etc. Debido a las limitaciones de recursos en las redes de sensores, es crucial seleccionar un pequeño número de mediciones de los sensores para reconstruir el campo. En este contexto, presentamos un novedoso algoritmo distribuido basado en el método de regresión Kriging para la reconstrucción del mapa de entorno radio en térm…

:CIENCIAS TECNOLÓGICAS [UNESCO]Computer scienceradio mapsReal-time computingContext (language use)02 engineering and technology0203 mechanical engineeringKrigingComputer Science::Networking and Internet Architecture0202 electrical engineering electronic engineering information engineeringWirelesskrigingCluster analysisShadow mappingbusiness.industryMechanical Engineering020302 automobile design & engineering020206 networking & telecommunicationsUNESCO::CIENCIAS TECNOLÓGICASComputer Science Applicationsdistributed channel predictionAutomotive EngineeringbusinessWireless sensor network5GCommunication channel
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A hybrid short read mapping accelerator

2013

Background The rapid growth of short read datasets poses a new challenge to the short read mapping problem in terms of sensitivity and execution speed. Existing methods often use a restrictive error model for computing the alignments to improve speed, whereas more flexible error models are generally too slow for large-scale applications. A number of short read mapping software tools have been proposed. However, designs based on hardware are relatively rare. Field programmable gate arrays (FPGAs) have been successfully used in a number of specific application areas, such as the DSP and communications domains due to their outstanding parallel data processing capabilities, making them a compet…

:Engineering::Computer science and engineering [DRNTU]GenomeComputer sciencebusiness.industryApplied MathematicsMethodology ArticleChromosome MappingSequence Analysis DNABiochemistryComputer Science ApplicationsSoftwareComputer engineeringStructural BiologySensitivity (control systems)DNA microarraybusinessField-programmable gate arrayAlgorithmMolecular BiologySequence AlignmentDigital signal processingAlgorithmsSoftwareReference genomeBMC Bioinformatics
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SARS-CoV-2 and its impact on the cardiovascular and digestive systems – The interplay between new virus variants and human cells

2023

Since infection with the novel coronavirus SARS-CoV-2 first emerged in Wuhan, China, in December 2019,the world has been battling the pandemic COVID-19. Patients of all ages and genders are now becoming infected with the new coronavirus variant (Omicron) worldwide, and its subvariants continue to pose a threat to health and life. This article provides a literature review of cardiovascular and gastrointestinal complications resulting from SARS-CoV-2 infection. COVID-19 primarily caused respiratory symptoms, but complications can affect many vital organs. SARS-CoV-2 binds to a human cell receptor (angiotensin-converting enzyme 2 – ACE2) that is predominantly expressed primarily in the heart a…

ACE2 receptor; Cardiovascular and digestive systems; Mutations; Omicron; SARS-CoV-2Structural BiologyGeneticsBiophysicsBiochemistryComputer Science ApplicationsBiotechnologyComputational and Structural Biotechnology Journal
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An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs

2020

AbstractMicroRNA are small non-coding RNAs that post-transcriptionally regulate the expression levels of messenger RNAs. MicroRNA regulation activity depends on the recognition of binding sites located on mRNA molecules. ComiR is a web tool realized to predict the targets of a set of microRNAs, starting from their expression profile. ComiR was trained with the information regarding binding sites in the 3’utr region, by using a reliable dataset containing the targets of endogenously expressed microRNA in D. melanogaster S2 cells. This dataset was obtained by comparing the results from two different experimental approaches, i.e., inhibition, and immunoprecipitation of the AGO1 protein--a comp…

AGO1ImmunoprecipitationComputer sciencelcsh:Computer applications to medicine. Medical informaticsBiochemistryOpen Reading Frames03 medical and health sciences0302 clinical medicineStructural BiologymicroRNAMelanogasterAnimalsHumansCoding regionGene silencing3'UTRRNA MessengerBinding sitelcsh:QH301-705.5Molecular Biology030304 developmental biology0303 health sciencesMessenger RNAbiologyThree prime untranslated regionResearchApplied MathematicsmicroRNA target predictionbiology.organism_classificationComputer Science Applications3’UTRMicroRNAsDrosophila melanogasterlcsh:Biology (General)Coding regionlcsh:R858-859.7DNA microarrayDrosophila melanogasterAlgorithmAlgorithms030217 neurology & neurosurgeryBMC Bioinformatics
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Hypertrophy and ER Stress Induced by Palmitate Are Counteracted by Mango Peel and Seed Extracts in 3T3-L1 Adipocytes

2023

A diet rich in saturated fatty acids (FAs) has been correlated with metabolic dysfunction and ROS increase in the adipose tissue of obese subjects. Thus, reducing hypertrophy and oxidative stress in adipose tissue can represent a strategy to counteract obesity and obesity-related diseases. In this context, the present study showed how the peel and seed extracts of mango (Mangifera indica L.) reduced lipotoxicity induced by high doses of sodium palmitate (PA) in differentiated 3T3-L1 adipocytes. Mango peel (MPE) and mango seed (MSE) extracts significantly lowered PA-induced fat accumulation by reducing lipid droplet (LDs) and triacylglycerol (TAGs) content in adipocytes. We showed that MPE a…

AMPKsaturated fatty acidOrganic ChemistryGeneral MedicineNrf2CatalysisComputer Science ApplicationsInorganic Chemistrymango seed extractSettore BIO/10 - Biochimicamango peel extracts; mango seed extracts; saturated fatty acids; 3T3-L1 adipocytes; ER stress; AMPK; Nrf2ER strePhysical and Theoretical Chemistrymango peel extract3T3-L1 adipocyteMolecular BiologySpectroscopyInternational Journal of Molecular Sciences; Volume 24; Issue 6; Pages: 5419
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Binding mode analysis of ABCA7 for the prediction of novel Alzheimer's disease therapeutics

2021

Graphical abstract

ATP Adenosine-triphosphateNBD nucleotide binding domainGSH reduced glutathionePolypharmacologyAlzheimer’s disease (AD)ATP-binding cassette transporterHTS high-throughput screeningBiochemistryABCA7Structural BiologyPLIF protein ligand interactionMSD membrane spanning domainPDB protein data bankTM transmembrane helixABC ATP-binding cassetteMultitarget modulation (PANABC)RMSD root mean square distanceABC transporter (ABCA1 ABCA4 ABCA7)Computer Science ApplicationsMOE Molecular Operating EnvironmentPharmacophoreSNP single-nucleotide polymorphismBiotechnologyResearch ArticleBBB blood-brain barrierBiophysicsDrug designComputational biologyBiologyAD Alzheimer’s diseasePET positron emission tomographyIC intracellular helixAPP amyloid precursor proteincryo-EM cryogenic-electron microscopyGeneticsHomology modelingBinding siteRational drug design and developmentComputingMethodologies_COMPUTERGRAPHICSNBD-cholesterol 7-nitro-2-13-benzoxadiazol-4-yl-cholesterolTransporterPSO particle swarm optimizationPET tracer (PETABC)ECD extracellular domainR-domain/region regulatory domain/regionABCA1biology.proteinEH extracellular helixTP248.13-248.65BODIPY-cholesterol 44-difluoro-4-bora-3a4a-diaza-s-indacene-cholesterolComputational and Structural Biotechnology Journal
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Revisiting the Nonadiabatic Process in 1,2-Dioxetane.

2015

Determining the ground and excited-state decomposition mechanisms of 1,2-dioxetane is essential to understand the chemiluminescence and bioluminescence phenomena. Several experimental and theoretical studies has been performed in the past without reaching a converged description. The reason is in part associated with the complex nonadiabatic process taking place along the reaction. The present study is an extension of a previous work (De Vico, L.; Liu, Y.-J.; Krogh, J. W.; Lindh, R. J. Phys. Chem. A 2007, 111, 8013-8019) in which a two-step mechanism was established for the chemiluminescence involving asynchronous O-O' and C-C' bond dissociations. New high-level multistate multi configurati…

Ab initio molecular dynamicschemistry.chemical_compound12-DioxetanechemistryComputational chemistryQuantum mechanicsTheoretical chemistrySinglet statePhysical and Theoretical ChemistryHigh ratioComputer Science ApplicationsJournal of chemical theory and computation
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Abel transforms with low regularity with applications to X-ray tomography on spherically symmetric manifolds

2017

We study ray transforms on spherically symmetric manifolds with a piecewise $C^{1,1}$ metric. Assuming the Herglotz condition, the X-ray transform is injective on the space of $L^2$ functions on such manifolds. We also prove injectivity results for broken ray transforms (with and without periodicity) on such manifolds with a $C^{1,1}$ metric. To make these problems tractable in low regularity, we introduce and study a class of generalized Abel transforms and study their properties. This low regularity setting is relevant for geophysical applications.

Abel transformsMathematics - Differential GeometryClass (set theory)Pure mathematicsApplied Mathematics010102 general mathematicsgeodesic x-ray tomographySpace (mathematics)01 natural sciencesInjective functionComputer Science ApplicationsTheoretical Computer Science010101 applied mathematicsDifferential Geometry (math.DG)geophysical imagingBroken ray tomographySignal ProcessingMetric (mathematics)PiecewiseFOS: MathematicsTomography0101 mathematicsspherical symmetryMathematical PhysicsMathematics
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