Search results for "Computer Science Applications"
showing 10 items of 3993 documents
Some efficient algorithms for the solution of a single nonlinear equation
1981
High order methods for the numerical solution of nonlinear scalar equations are proposed which are more efficient than known procedures, and a unified approach to various methods suggested in literature is given.
ei.Datasets: Real Data Sets for Assessing Ecological Inference Algorithms
2021
Ecological inference models aim to infer individual-level relationships using aggregate data. They are routinely used to estimate voter transitions between elections, disclose split-ticket voting behaviors, or infer racial voting patterns in U.S. elections. A large number of procedures have been proposed in the literature to solve these problems; therefore, an assessment and comparison of them are overdue. The secret ballot however makes this a difficult endeavor since real individual data are usually not accessible. The most recent work on ecological inference has assessed methods using a very small number of data sets with ground truth, combined with artificial, simulated data. This arti…
New stage-discharge relationship for inclined non-rectangular weirs
2018
Abstract In this paper, the outflow process of inclined non-rectangular weirs is studied applying the dimensional analysis and the incomplete self-similarity theory. At first, a new stage-discharge equation, applicable for the non-rectangular weirs having a different geometrical shape (parabolic, semicircular, inverted semicircular), is theoretically deduced using a characteristic width. Then, this power stage-discharge relationship (Eq. (17) ) is calibrated and tested using measurements carried out by Raiknar for parabolic, semicircular and inverted semicircular weirs having different inclination respect to the vertical (10°, 20°, 30°, 40° and 45°). For each geometrical shape, the analysis…
A comparison of simplex and simulated annealing for optimization of a new rear underrun protective device
2012
In this paper, two optimization approaches to improve the product design process have been analysed. Through the analysis of a case study, concerning the designing of a new High Energy Absorption Rear Underrun Protective Device (HEARUPD), two different optimization approaches (simplex and simulated annealing) have been compared. In the implemented optimization processes, the crash between an economy car and the rear part of a truck has been simulated by dynamic numerical (FEM) analyses. Moreover, authors have proposed the use of a suitable linear function of four variables with the purpose of reducing the multi-objective optimization processes to mono-objective ones. That has been made to s…
A Bayesian analysis of the thermal challenge problem
2008
Abstract A major question for the application of computer models is Does the computer model adequately represent reality? Viewing the computer models as a potentially biased representation of reality, Bayarri et al. [M. Bayarri, J. Berger, R. Paulo, J. Sacks, J. Cafeo, J. Cavendish, C. Lin, J. Tu, A framework for validation of computer models, Technometrics 49 (2) (2007) 138–154] develop the simulator assessment and validation engine ( SAVE ) method as a general framework for answering this question. In this paper, we apply the SAVE method to the challenge problem which involves a thermal computer model designed for certain devices. We develop a statement of confidence that the devices mode…
Pruning Incremental Linear Model Trees with Approximate Lookahead
2014
Incremental linear model trees with approximate lookahead are fast, but produce overly large trees. This is due to non-optimal splitting decisions boosted by a possibly unlimited number of examples obtained from a data source. To keep the processing speed high and the tree complexity low, appropriate incremental pruning techniques are needed. In this paper, we introduce a pruning technique for the class of incremental linear model trees with approximate lookahead on stationary data sources. Experimental results show that the advantage of approximate lookahead in terms of processing speed can be further improved by producing much smaller and consequently more explanatory, less memory consumi…
Traitpedia: a collaborative effort to gather species traits
2018
Abstract Summary Traitpedia is a collaborative database aimed to collect binary traits in a tabular form for a growing number of species. Availability and implementation Traitpedia can be accessed from http://cbdm-01.zdv.uni-mainz.de/~munoz/traitpedia. Supplementary information Supplementary data are available at Bioinformatics online.
BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures
2018
Abstract Motivation Modern bioinformatics tools for analyzing large-scale NGS datasets often need to include fast implementations of core sequence alignment algorithms in order to achieve reasonable execution times. We address this need by presenting the BGSA toolkit for optimized implementations of popular bit-parallel global pairwise alignment algorithms on modern microprocessors. Results BGSA outperforms Edlib, SeqAn and BitPAl for pairwise edit distance computations and Parasail, SeqAn and BitPAl when using more general scoring schemes for pairwise alignments of a batch of sequence reads on both standard multi-core CPUs and Xeon Phi many-core CPUs. Furthermore, banded edit distance perf…
The Psychological Science Accelerator’s COVID-19 rapid-response dataset
2023
Funder: Amazon Web Services (AWS) Imagine Grant
CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies
2020
Motivation Numerous sequencing studies, including transcriptomics of host-pathogen systems, sequencing of hybrid genomes, xenografts, mixed species systems, metagenomics and meta-transcriptomics, involve samples containing genetic material from divergent organisms. A crucial step in these studies is identifying from which organism each sequencing read originated, and the experimental design should be directed to minimize biases caused by cross-mapping of reads to incorrect source genomes. Additionally, pooling of sufficiently different genetic material into a single sequencing library could significantly reduce experimental costs but requires careful planning and assessment of the impact of…