Search results for "DATA"

showing 10 items of 12992 documents

Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.

2000

AbstractPosttranscriptional gene silencing (PTGS) in plants results from the degradation of mRNAs and shows phenomenological similarities with quelling in fungi and RNAi in animals. Here, we report the isolation of sgs2 and sgs3 Arabidopsis mutants impaired in PTGS. We establish a mechanistic link between PTGS, quelling, and RNAi since the Arabidopsis SGS2 protein is similar to an RNA-dependent RNA polymerase like N. crassa QDE-1, controlling quelling, and C. elegans EGO-1, controlling RNAi. In contrast, SGS3 shows no significant similarity with any known or putative protein, thus defining a specific step of PTGS in plants. Both sgs2 and sgs3 mutants show enhanced susceptibility to virus, d…

0106 biological sciencesRNA-induced transcriptional silencingDNA PlantRNA-induced silencing complexTrans-acting siRNAMolecular Sequence DataPotyvirusArabidopsisRNA-dependent RNA polymerase[SDV.BC]Life Sciences [q-bio]/Cellular BiologyGenes Plant01 natural sciencesCucumovirusGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesSolanum lycopersicumRNA interferenceArabidopsisGene expressionGene silencingAmino Acid SequenceGene SilencingCloning MolecularRNA Processing Post-Transcriptional[SDV.BC] Life Sciences [q-bio]/Cellular BiologyComputingMilieux_MISCELLANEOUS030304 developmental biologyPlant DiseasesPlant ProteinsGenetics0303 health sciencesbiologyBase SequenceBiochemistry Genetics and Molecular Biology(all)Arabidopsis ProteinsfungiTobamovirusChromosome MappingGENETIQUEbiology.organism_classificationRNA-Dependent RNA PolymeraseMutagenesis010606 plant biology & botanyCell
researchProduct

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

2013

International audience; The mutualistic symbiosis involving Glomeromycota, a distinctive phylum of early diverging Fungi, is widely hypothesized to have promoted the evolution of land plants during the middle Paleozoic. These arbuscular mycorrhizal fungi (AMF) perform vital functions in the phosphorus cycle that are fundamental to sustainable crop plant productivity. The unusual biological features of AMF have long fascinated evolutionary biologists. The coenocytic hyphae host a community of hundreds of nuclei and reproduce clonally through large multinucleated spores. It has been suggested that the AMF maintain a stable assemblage of several different genomes during the life cycle, but thi…

0106 biological sciencesRhizophagus irregularismutualism[SDV]Life Sciences [q-bio]Molecular Sequence DataFungus01 natural sciencesGenomecarbohydrate-active enzymes; effector; fungal evolution; glomales; mutualismGlomeromycotaEvolution Molecular03 medical and health sciencesSymbiosisMycorrhizaeBotanyGlomeromycotaSymbiosisGenefungal evolution030304 developmental biologyGenomic organizationMucoromycotina0303 health sciencesMultidisciplinarybiology[ SDV ] Life Sciences [q-bio]Base SequencefungiglomalesSequence Analysis DNA15. Life on landPlantsBiological Sciencesbiology.organism_classificationeffectorEvolutionary biologycarbohydrate-active enzymesGenome Fungal010606 plant biology & botany
researchProduct

Regulation of reactive oxygen species production by a 14-3-3 protein in elicited tobacco cells.

2007

International audience; The regulation of the system responsible for the production of reactive oxygen species (ROS) during plant–microorganism interaction is still largely unknown. The protein NtrbohD has been recently demonstrated as the plasma membrane oxidase responsible for ROS production in elicited tobacco cells. Here, its C-terminus part was used as a bait in a two-hybrid screen in order to identify putative regulators of this system. This led to the isolation of a cDNA coding for a member of the 14-3-3 protein family. The corresponding transcript was induced after infiltration of tobacco leaves with the fungal elicitor cryptogein. Tobacco cells transformed with an antisense constru…

0106 biological sciencesSIGNALLINGDNA ComplementaryProtein familyPhysiologyMolecular Sequence DataContext (language use)Plant ScienceBiology01 natural sciences03 medical and health sciencesTwo-Hybrid System TechniquesTobaccoNADPH OXIDASEAmino Acid Sequence14-3-3 protein030304 developmental biologychemistry.chemical_classification[SDV.EE]Life Sciences [q-bio]/Ecology environment0303 health sciencesReactive oxygen speciesOxidase testCRYPTOGEINNADPH oxidaseSequence Homology Amino AcidElicitorchemistryBiochemistry14-3-3 ProteinsNAD(P)H oxidasebiology.proteinReactive Oxygen Species010606 plant biology & botanyPlant, cellenvironment
researchProduct

Soil health through soil disease suppression: Which strategy from descriptors to indicators?

2007

International audience; Soil is a component of primary importance in crop production, even if it is often neglected, or only regarded as a physical support for the growth of plants. However, with the increasing societal concerns for the sustainability of agriculture, soil must be considered as a living system. Its quality results from the multiple interactions among physicochemical and biological components, notably the microbial communities, primordial for soil function. Crops are threatened by soil-borne diseases. These are often difficult to control, because of the “hidden” status of the pathogens and also because of the absence, noxiousness or lack of efficacy of chemical treatments. In…

0106 biological sciencesSOIL QUALITYmedia_common.quotation_subjectdata analysisSOIL HEALTHmicrobial communitiesSoil ScienceContext (language use)BIOTIC AND ABIOTIC FACTORS[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil studycomplex mixtures01 natural sciencesMicrobiologyDATA ANALYSISdisease suppressionCULTURAL PRACTICESCultural practiceQuality (business)soil qualityMICROBIAL COMMUNITIESINDICATORmedia_commoncultural practicesbiotic and abiotic factors2. Zero hungerSoil healthsoil healthbusiness.industryEcologyindicatorEnvironmental resource managementDISEASE SUPPRESSIONSANTE DU SOL04 agricultural and veterinary sciences15. Life on landSoil qualityAgricultureSustainability040103 agronomy & agriculture0401 agriculture forestry and fisheriesEnvironmental sciencebusiness010606 plant biology & botanyDiversity (politics)Soil Biology and Biochemistry
researchProduct

Tackling invasive alien species in Europe II: threats and opportunities until 2020

2017

2nd Freshwater Invasives - Networking for Strategy II (FINS-II) Conference -- JUL 11-14, 2016 -- Zagreb, CROATIA Skora, Michal Edward/0000-0002-9121-1318; Groom, Quentin/0000-0002-0596-5376; Lukas, Juliane/0000-0003-3336-847X; Skora, Michal/0000-0002-9121-1318; Piria, Marina/0000-0001-6324-9282; Smith, Emily/0000-0003-2767-9933; Simonovic, Predrag/0000-0002-4819-4962; Pastorino, Paolo/0000-0002-0585-1168; Koutsikos, Nicholas/0000-0003-0680-4504; Vilizzi, Lorenzo/0000-0001-8103-885X; Dobrzycka-Krahel, Aldona/0000-0002-4252-895X; Tarkan, Ali Serhan/0000-0001-8628-0514 WOS: 000412582000002 Invasive alien species (IAS) are a significant and growing problem worldwide. In Europe, some aspects of …

0106 biological sciencesScoring systemStandardizationympäristöympäristöoikeusData managementBiosecurityympäristönhoitoECOSYSTEM SERVICES01 natural sciencesFRESH-WATER FISHenvironmental managementCITIZEN SCIENCEnon-native species ; legislation ; policy ; environmental management ; sequential rank voting ; scoring systemCitizen sciencesequential rank votingSDG 15 - Life on LandlainsäädäntöWarning systemCHALLENGESEcologyEnvironmental resource managementStakeholderPublic relationsnon-native speciesPolicyComputingMethodologies_DOCUMENTANDTEXTPROCESSING/dk/atira/pure/subjectarea/asjc/1100/1105non-native species; legislation; policy; environmental management; sequential rank voting; scoring systempolicyIMPACTSEnvironmental managementSequential rank votingCONSERVATIONLegislationNon-native species/dk/atira/pure/subjectarea/asjc/2300/2308LegislationBiologyManagement Monitoring Policy and Lawlegislation010603 evolutionary biology/dk/atira/pure/sustainabledevelopmentgoals/life_on_landEcology and EnvironmentGeneralLiterature_MISCELLANEOUSMANAGEMENTKNOWLEDGEnon-native specie14. Life underwatervieraslajit/dk/atira/pure/subjectarea/asjc/2300/2303ympäristöjohtaminenEcology Evolution Behavior and Systematicsbusiness.industry010604 marine biology & hydrobiologyscoring system13. Climate actionPrivate propertyta1181BIODIVERSITYbusiness
researchProduct

Molecular Phylogeny of Tintinnid Ciliates (Tintinnida, Ciliophora)

2012

We investigated the phylogeny of tintinnids (Ciliophora, Tintinnida) with 62 new SSU-rDNA sequences from single cells of 32 marine and freshwater species in 20 genera, including the first SSU-rDNA sequences for Amphorides, Climacocylis, Codonaria, Cyttarocylis, Parundella, Petalotricha, Undella and Xystonella, and 23 ITS sequences of 17 species in 15 genera. SSU-rDNA phylogenies suggested a basal position for Eutintinnus, distant to other Tintinnidae. We propose Eutintinnidae fam. nov. for this divergent genus, keeping the family Tintinnidae for Amphorellopsis, Amphorides and Steenstrupiella. Tintinnopsis species branched in at least two separate groups and, unexpectedly, Climacocylis branc…

0106 biological sciencesSequence analysisMolecular Sequence DataZoologyBiology010603 evolutionary biology01 natural sciencesMicrobiologyDNA Ribosomal03 medical and health sciencesPhylogeneticsGenusDNA Ribosomal SpacerRNA Ribosomal 18SCluster Analysis14. Life underwaterCiliophoraCladeSensu strictoPhylogeny[SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography030304 developmental biology0303 health sciencesEcologyWaterGenes rRNASequence Analysis DNARibosomal RNADNA Protozoanbiology.organism_classificationMolecular phylogeneticsRNA ProtozoanTintinnid
researchProduct

An isoleucine-leucine substitution in chloroplastic acetyl-CoA carboxylase from green foxtail (Setaria viridis L. Beauv.) is responsible for resistan…

2002

The cDNAs encoding chloroplastic acetyl-CoA carboxylase (ACCase, EC 6.4.1.2) from three lines of Setaria viridis (L. Beauv.) resistant or sensitive to sethoxydim, and from one sethoxydim-sensitive line of Setaria italica (L. Beauv.) were cloned and sequenced. Sequence comparison revealed that a single isoleucine-leucine substitution discriminated ACCases from sensitive and resistant lines. Using near-isogenic lines of S. italica derived from interspecific hybridisation, we demonstrated that the transfer of the S. viridis mutant ACCase allele into a sethoxydim-sensitive S. italica line conferred resistance to this herbicide. We confirmed this result using allele-specific polymerase chain rea…

0106 biological sciencesSetariaChloroplastsMutantMolecular Sequence DataDrug ResistancePlant ScienceMolecular cloningPoaceae01 natural sciences[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants geneticsLeucine[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants geneticsGeneticsPoint MutationAmino Acid SequenceIsoleucineComputingMilieux_MISCELLANEOUSAllelesPhylogenyGenes DominantbiologySequence Homology Amino AcidSetaria viridisCyclohexanonesHerbicidesAcetyl-CoA carboxylase04 agricultural and veterinary sciencesbiology.organism_classification3. Good healthPyruvate carboxylaseBiochemistryAmino Acid Substitution040103 agronomy & agriculture0401 agriculture forestry and fisheriesLeucineIsoleucineSequence Alignment010606 plant biology & botanyAcetyl-CoA CarboxylasePlanta
researchProduct

Notulae to the Italian native vascular flora: 3

2017

In this contribution new data concerning the distribution of native vascular flora in Italy are presented. It includes new records, exclusions, and confirmations to the Italian administrative regions for taxa in the generaAsplenium,Bolboschoenus,Botrychium,Chamaerops,Crocus,Galeopsis,Grafia,Helosciadium,Hieracium,Juniperus,Leucanthemum,Lolium,Medicago,Phalaris,Piptatherum,Potamogeton,Salicornia,Salvia,Seseli,Silene,Spiraea,TorilisandVicia.Rhaponticoidescalabricais proposed assynonym novumofR.centaurium. Furthermore, new combinations in the generaGalatellaandLactucaare proposed.

0106 biological sciencesSettore BIO/02 - Botanica SistematicaFloristic data Italy new combinations nomenclaturenew combinationsFloristic dataPlant ScienceBiology010603 evolutionary biology01 natural scienceslcsh:QK1-989Aquatic organismsItalylcsh:BotanyAquatic plantBotanySettore BIO/03 - Botanica Ambientale E ApplicataTaxonomy (biology)nomenclatureNomenclatureNew combinationEcology Evolution Behavior and Systematics010606 plant biology & botany
researchProduct

Reducing the data-deficiency of threatened European habitats: Spatial variation of sabellariid worm reefs and associated fauna in the Sicily Channel,…

2017

Biogenic reefs, such as those produced by tube-dwelling polychaetes of the genus Sabellaria, are valuable marine habitats which are a focus of protection according to European legislation. The achievement of this goal is potentially hindered by the lack of essential empirical data, especially in the Mediterranean Sea. This study addresses some of the current knowledge gaps by quantifying and comparing multi-scale patterns of abundance and distribution of two habitat-forming species (Sabellaria alveolata and S. spinulosa) and their associated fauna along 190 km of coast on the Italian side of the Sicily Channel. While the abundance of the two sabellariids and the total number of associated t…

0106 biological sciencesSettore BIO/07 - EcologiaEndangered habitatFaunaPopulation DynamicsSettore BIO/05 - ZoologiaAquatic ScienceOceanography010603 evolutionary biology01 natural sciencesBiogenic reef; Ecosystem engineer; Endangered habitat; Sabellaria alveolata; Sabellaria spinulosa; Spatial scale; Species interaction; SubtidalSabellariaSabellaria alveolataMediterranean seaAbundance (ecology)Biogenic reef; Ecosystem engineer; Endangered habitat; Sabellaria alveolata Sabellaria spinulosa Spatial scale Species interaction SubtidalMediterranean SeaAnimalsAmphipodaSubtidal14. Life underwaterSicilyEcosystemSabellaria spinulosaPolychaetebiologyEcology010604 marine biology & hydrobiologyData CollectionSpatial scalePolychaetaGeneral MedicineBiodiversity15. Life on landbiology.organism_classificationPollutionEcosystem engineerSabellaria spinulosaBiogenic reefSpecies richnessSpecies interactionSabellaria alveolataEnvironmental Monitoring
researchProduct

The author's reply to N.R. Haddaway.

2017

Abstract In this reply we respond to the commentary of Dr. Haddaway addressed in searching for pitfalls in our systematic mapping exercise “Collating science-based evidence to inform public opinion on the environmental effects of marine drilling platforms in the Mediterranean Sea” recently published in Journal of Environmental Management (Mangano, M.C. and Sara, G. 2017. Journal of Environmental Management 188: 195–202). We discussed each so called “pitfalls” and, in our opinion, the main cornerstones of systematic map – SM (repeatability, comprehensiveness, transparency, traceability, quality, generalizability) are safe guaranteeing the “gold standard” required by this technique. Where nee…

0106 biological sciencesSettore BIO/07 - EcologiaEngineeringEnvironmental EngineeringTailoringmedia_common.quotation_subject010501 environmental sciencesManagement Monitoring Policy and LawPublic opinionTransparency010603 evolutionary biology01 natural sciencesMediterranean SeaQuality (business)Operations managementGeneralizability theoryRepeatabilityBaseline (configuration management)Waste Management and Disposal0105 earth and related environmental sciencesmedia_commonMinimum requirementProtocol (science)End userbusiness.industrySystematic mapGeneral MedicineComprehensiveneData scienceTransparency (behavior)Public OpinionbusinessNexus (standard)Journal of environmental management
researchProduct