Search results for "DIF"

showing 10 items of 16936 documents

Absolute quantification of noncoding RNA by microscale thermophoresis

2019

Abstract Accurate quantification of the copy numbers of noncoding RNA has recently emerged as an urgent problem, with impact on fields such as RNA modification research, tissue differentiation, and others. Herein, we present a hybridization‐based approach that uses microscale thermophoresis (MST) as a very fast and highly precise readout to quantify, for example, single tRNA species with a turnaround time of about one hour. We developed MST to quantify the effect of tRNA toxins and of heat stress and RNA modification on single tRNA species. A comparative analysis also revealed significant differences to RNA‐Seq‐based quantification approaches, strongly suggesting a bias due to tRNA modifica…

tRNA stabilityRNA UntranslatedAbsolute quantificationRNA Quantification | Hot PaperComputational biology010402 general chemistry01 natural sciencesCatalysis[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]RNA modification540 ChemistryhybridizationComputingMilieux_MISCELLANEOUS010405 organic chemistryChemistryMicroscale thermophoresisCommunicationRNA[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyGeneral ChemistryRibosomal RNANon-coding RNAmicroscale thermophoresisCommunications0104 chemical sciencesTissue DifferentiationTransfer RNA570 Life sciences; biologyfluorescenceRNA quantification
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T9+HUD: Physical Keypad and HUD can Improve Driving Performance while Typing and Driving

2016

We introduce T9+HUD, a text entry method designed to decrease visual distraction while driving and typing. T9+HUD combines a physical 3x4 keypad on the steering wheel with a head-up-display (HUD) for projecting output on the windshield. Previous work suggests this may be a visually less demanding way to type while driving than the popular case which requires shifts of visual attention away from the road. We present a prototype design and report first results from a controlled evaluation in a driving simulator. While driving, the T9+HUD text entry rate was equal compared to a dashboard-mounted touchscreen device, but it reduced lane deviations by 70%. Furthermore, there was no significant di…

ta113050210 logistics & transportationComputer science05 social sciencesSignificant differenceDriving simulatorcar interfacesSteering wheelT9law.inventionautomotive user interfacesTouchscreenlawWindshield0502 economics and business11. SustainabilityT9 text inputKeypadVisual attentiontext input0501 psychology and cognitive sciencesVisual distraction050107 human factorsSimulation
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Adaptive framework for network traffic classification using dimensionality reduction and clustering

2012

Information security has become a very important topic especially during the last years. Web services are becoming more complex and dynamic. This offers new possibilities for attackers to exploit vulnerabilities by inputting malicious queries or code. However, these attack attempts are often recorded in server logs. Analyzing these logs could be a way to detect intrusions either periodically or in real time. We propose a framework that preprocesses and analyzes these log files. HTTP queries are transformed to numerical matrices using n-gram analysis. The dimensionality of these matrices is reduced using principal component analysis and diffusion map methodology. Abnormal log lines can then …

ta113Computer scienceNetwork securitybusiness.industryDimensionality reductionintrusion detectionk-meansdiffusion mapServer logcomputer.software_genreanomaly detectionTraffic classificationkoneoppiminenWeb log analysis softwareAnomaly detectionData miningWeb servicetiedonlouhintaCluster analysisbusinesscomputern-grams
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Gear classification and fault detection using a diffusion map framework

2015

This article proposes a system health monitoring approach that detects abnormal behavior of machines. Diffusion map is used to reduce the dimensionality of training data, which facilitates the classification of newly arriving measurements. The new measurements are handled with Nyström extension. The method is trained and tested with real gear monitoring data from several windmill parks. A machine health index is proposed, showing that data recordings can be classified as working or failing using dimensionality reduction and warning levels in the low dimensional space. The proposed approach can be used with any system that produces high-dimensional measurement data. peerReviewed

ta113Diffusion (acoustics)Training setta214Computer scienceDimensionality reductiondiffusion mapExtension (predicate logic)computer.software_genreFault detection and isolationfault detectionsystem health monitoringArtificial IntelligenceSignal ProcessingComputer Vision and Pattern RecognitionData miningCluster analysiscomputerSoftwareCurse of dimensionalityclustering
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On shape differentiation of discretized electric field integral equation

2013

Abstract This work presents shape derivatives of the system matrix representing electric field integral equation discretized with Raviart–Thomas basis functions. The arising integrals are easy to compute with similar methods as the entries of the original system matrix. The results are compared to derivatives computed with automatic differentiation technique and finite differences, and are found to be in an excellent agreement. Furthermore, the derived formulas are employed to analyze shape sensitivity of the input impedance of a planar inverted F-antenna, and the results are compared to those obtained using a finite difference approximation.

ta113Discretizationta213Automatic differentiationApplied MathematicsMathematical analysista111General EngineeringFinite differenceBasis functionMethod of moments (statistics)Electric-field integral equationComputational MathematicsShape optimizationSensitivity (control systems)AnalysisMathematicsEngineering Analysis with Boundary Elements
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A posteriori error estimates for time-dependent reaction-diffusion problems based on the Payne-Weinberger inequality

2015

We consider evolutionary reaction-diffusion problem with mixed Dirichlet--Robin boundary conditions. For this class of problems, we derive two-sided estimates of the distance between any function in the admissible energy space and exact solution of the problem. The estimates (majorants and minorants) are explicitly computable and do not contain unknown functions or constants. Moreover, it is proved that the estimates are equivalent to the energy norm of the deviation from the exact solution.

ta113InequalityApplied Mathematicsmedia_common.quotation_subjectta111Numerical Analysis (math.NA)Parabolic partial differential equationExact solutions in general relativityevolutionary reaction-diffusion problemsNorm (mathematics)FOS: MathematicsDiscrete Mathematics and CombinatoricsA priori and a posterioriApplied mathematicsBoundary value problemMathematics - Numerical AnalysisDirichlet–Robin boundary conditionsAnalysisMathematicsmedia_common
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Reduced Order Models for Pricing European and American Options under Stochastic Volatility and Jump-Diffusion Models

2017

Abstract European options can be priced by solving parabolic partial(-integro) differential equations under stochastic volatility and jump-diffusion models like the Heston, Merton, and Bates models. American option prices can be obtained by solving linear complementary problems (LCPs) with the same operators. A finite difference discretization leads to a so-called full order model (FOM). Reduced order models (ROMs) are derived employing proper orthogonal decomposition (POD). The early exercise constraint of American options is enforced by a penalty on subset of grid points. The presented numerical experiments demonstrate that pricing with ROMs can be orders of magnitude faster within a give…

ta113Mathematical optimizationGeneral Computer ScienceStochastic volatilityDifferential equationEuropean optionMonte Carlo methods for option pricingJump diffusion010103 numerical & computational mathematics01 natural sciencesTheoretical Computer Science010101 applied mathematicsValuation of optionsModeling and Simulationlinear complementary problemRange (statistics)Asian optionreduced order modelFinite difference methods for option pricing0101 mathematicsAmerican optionoption pricingMathematicsJournal of Computational Science
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Ensemble strategies in Compact Differential Evolution

2011

Differential Evolution is a population based stochastic algorithm with less number of parameters to tune. However, the performance of DE is sensitive to the mutation and crossover strategies and their associated parameters. To obtain optimal performance, DE requires time consuming trial and error parameter tuning. To overcome the computationally expensive parameter tuning different adaptive/self-adaptive techniques have been proposed. Recently the idea of ensemble strategies in DE has been proposed and favorably compared with some of the state-of-the-art self-adaptive techniques. Compact Differential Evolution (cDE) is modified version of DE algorithm which can be effectively used to solve …

ta113Mathematical optimizationStochastic processComputer scienceDifferential evolutionCrossoverGlobal optimizationEvolutionary computation2011 IEEE Congress of Evolutionary Computation (CEC)
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Reduced Order Models for Pricing American Options under Stochastic Volatility and Jump-diffusion Models

2016

American options can be priced by solving linear complementary problems (LCPs) with parabolic partial(-integro) differential operators under stochastic volatility and jump-diffusion models like Heston, Merton, and Bates models. These operators are discretized using finite difference methods leading to a so-called full order model (FOM). Here reduced order models (ROMs) are derived employing proper orthogonal decomposition (POD) and non negative matrix factorization (NNMF) in order to make pricing much faster within a given model parameter variation range. The numerical experiments demonstrate orders of magnitude faster pricing with ROMs. peerReviewed

ta113Mathematical optimizationStochastic volatilityDiscretizationComputer scienceJump diffusionFinite difference method010103 numerical & computational mathematics01 natural sciencesNon-negative matrix factorization010101 applied mathematicsValuation of optionslinear complementary problemRange (statistics)General Earth and Planetary SciencesApplied mathematicsreduced order modelFinite difference methods for option pricing0101 mathematicsAmerican optionoption pricingGeneral Environmental ScienceProcedia Computer Science
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Iterative Methods for Pricing American Options under the Bates Model

2013

We consider the numerical pricing of American options under the Bates model which adds log-normally distributed jumps for the asset value to the Heston stochastic volatility model. A linear complementarity problem (LCP) is formulated where partial derivatives are discretized using finite differences and the integral resulting from the jumps is evaluated using simple quadrature. A rapidly converging fixed point iteration is described for the LCP, where each iterate requires the solution of an LCP. These are easily solved using a projected algebraic multigrid (PAMG) method. The numerical experiments demonstrate the efficiency of the proposed approach. Furthermore, they show that the PAMG meth…

ta113Mathematical optimizationStochastic volatilityDiscretizationIterative methodComputer scienceFinite difference methodLinear complementarity problemIterative methodQuadrature (mathematics)Multigrid methodFixed-point iterationBates modelLinear complementarity problemGeneral Earth and Planetary SciencesPartial derivativeAmerican optionGeneral Environmental ScienceProcedia Computer Science
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