Search results for "Data Integration"
showing 10 items of 81 documents
Aligning Relational Schema and OWL Ontologies with Hidden Markov Model
2016
The problem of bridging the gap between relational schema and ontologies is actively investigated in the Semantic Web and business communities. The main motivations are the OBDA scenario, where a domain ontology allows to hidden the technical details of the db to end-users; and the persistent storage of ontologies in db for facilitating search and retrieval keeping the benefits of DBMSs such as security and integrity. In these cases, the ABox is usually stored into a db, and the TBox is maintained in an ontology; for this reason, schema alignment is a more significant problem than the instance matching one. The use of manual mappings is hard and expensive, especially for large representatio…
A Web Centric Semantic Mediation Approach for Spatial Information Systems
2006
International audience; Semantic mediation is increasingly at the heart of the design of emerging webbased information systems, particularly spatial information systems thatrequire the integration or interoperation of a collection of heterogeneousdata sources. Ontologies are increasingly used to represent agreed semantic ofapplications by providing formal description models and related tools toexplicitly specify the conceptual entities of an application. Past research intraditional database integration has identified key issues in the resolution ofvarious structural and semantic conflicts. Recent research effort has extendedthis early research to address the interoperability of spatial info…
Towards Implementation of OMOP in a German University Hospital Consortium
2018
Background In 2015, the German Federal Ministry of Education and Research initiated a large data integration and data sharing research initiative to improve the reuse of data from patient care and translational research. The Observational Medical Outcomes Partnership (OMOP) common data model and the Observational Health Data Sciences and Informatics (OHDSI) tools could be used as a core element in this initiative for harmonizing the terminologies used as well as facilitating the federation of research analyses across institutions. Objective To realize an OMOP/OHDSI-based pilot implementation within a consortium of eight German university hospitals, evaluate the applicability to support dat…
Model independent assertions for integration of heterogeneous schemas
1992
Due to the proliferation of database applications, the integration of existing databases into a distributed or federated system is one of the major challenges in responding to enterprises' information requirements. Some proposed integration techniques aim at providing database administrators (DBAs) with a view definition language they can use to build the desired integrated schema. These techniques leave to the DBA the responsibility of appropriately restructuring schema elements from existing local schemas and of solving inter-schema conflicts. This paper investigates the assertion-based approach, in which the DBA's action is limited to pointing out corresponding elements in the schemas an…
A Context-Based Enterprise Ontology
2007
The main purpose of an enterprise ontology is to promote the common understanding between people across enterprises, as well as to serve as a communication medium between people and applications, and between different applications. This paper outlines a top-level ontology, called the context-based enterprise ontology, which aims to advance the understanding of the nature, purposes and meanings of things in enterprises with providing basic concepts for conceiving, structuring and representing things within contexts and/or as contexts. The ontology is based on the contextual approach according to which a context involves seven domains: purpose, actor, action, object, facility, location, and t…
Geostatistical 3-dimensional integration of measurements of soil magnetic susceptibility.
2010
In soil magnetometry, two types of measurements are usually performed. The first type is measurements performed on the soil surface, frequently using an MS2D sensor. The second type includes measurements of magnetic susceptibility carried out in the soil profile, usually to a depth of about 30 cm. Up to now, such measurement results were analyzed separately. However, it is possible and advantageous to integrate these two types of measurements. The goal of the study was to integrate measurements of magnetic susceptibility performed on the soil surface and in the soil profile. More specifically, the goal was to obtain 3-dimensional spatial distributions of magnetic susceptibility of the topso…
User experience-based information retrieval from semistar data ontologies
2019
The time necessary for the doubling of medical knowledge is rapidly decreasing. In such circumstances, it is of utmost importance for the information retrieval process to be rapid, convenient and straightforward. However, it often lacks at least one of these properties. Several obstacles prohibit domain experts extracting knowledge from their databases without involving the third party in the form of IT professionals. The main limitation is usually the complexity of querying languages and tools. This paper proposes the approach of using a keywords-containing natural language for querying the database and exploiting the system that could automatically translate such queries to already existi…
mBISON: Finding miRNA target over-representation in gene lists from ChIP-sequencing data
2015
Background Over-representation of predicted miRNA targets in sets of genes regulated by a given transcription factor (e.g. as defined by ChIP-sequencing experiments) helps to identify biologically relevant miRNA targets and is useful to get insight into post-transcriptional regulation. Findings To facilitate the application of this approach we have created the mBISON web-application. mBISON calculates the significance of over-representation of miRNA targets in a given non-ranked gene set. The gene set can be specified either by a list of genes or by one or more ChIP-seq datasets followed by a user-defined peak-gene association procedure. mBISON is based on predictions from TargetScan and us…
Evaluating protein structures determined by structural genomics consortia.
2006
Structural genomics projects are providing large quantities of new 3D structural data for proteins. To monitor the quality of these data, we have developed the protein structure validation software suite (PSVS), for assessment of protein structures generated by NMR or X-ray crystallographic methods. PSVS is broadly applicable for structure quality assessment in structural biology projects. The software integrates under a single interface analyses from several widely-used structure quality evaluation tools, including PROCHECK (Laskowski et al., J Appl Crystallog 1993;26:283-291), MolProbity (Lovell et al., Proteins 2003;50:437-450), Verify3D (Luthy et al., Nature 1992;356:83-85), ProsaII (Si…
Analysis of data fusion techniques for multi-microphone audio event detection in adverse environments
2017
Acoustic event detection (AED) is currently a very active research area with multiple applications in the development of smart acoustic spaces. In this context, the advances brought by Internet of Things (IoT) platforms where multiple distributed microphones are available have also contributed to this interest. In such scenarios, the use of data fusion techniques merging information from several sensors becomes an important aspect in the design of multi-microphone AED systems. In this paper, we present a preliminary analysis of several data-fusion techniques aimed at improving the recognition accuracy of an AED system by taking advantage of the diversity provided by multiple microphones in …