Search results for "Density Functional Theory"

showing 10 items of 981 documents

A Molecular Electron Density Theory Study of the Reactivity of Azomethine Imine in [3+2] Cycloaddition Reactions

2017

The electronic structure and the participation of the simplest azomethine imine (AI) in [3+2] cycloaddition (32CA) reactions have been analysed within the Molecular Electron Density Theory (MEDT) using DFT calculations at the MPWB1K/6-311G(d) level. Electron localisation function (ELF) topological analysis reveals that AI has a pseudoradical structure, while the conceptual DFT reactivity indices characterise this TAC as a moderate electrophile and a good nucleophile. The non-polar 32CA reaction of AI with ethylene takes place through a one-step mechanism with low activation energy, 5.3 kcal/mol-1. A bonding evolution theory (BET) study indicates that this reaction takes place through a non-…

Models MolecularThiosemicarbazones[3+2] cycloaddition reactionsImineMolecular Conformationmolecular mechanismsazomethine iminePharmaceutical ScienceElectronsElectronic structureActivation energy010402 general chemistry01 natural sciencesArticlebonding evolution theoryAnalytical Chemistrychemistry.chemical_compoundNucleophileComputational chemistryDrug Discoveryconceptual density functional theoryMoleculeReactivity (chemistry)organic_chemistryelectron densityPhysical and Theoretical Chemistryazomethine imine; [3+2] cycloaddition reactions; molecular electron density theory; conceptual density functional theory; electron localisation function; bonding evolution theory; electron density; molecular mechanisms; chemical reactivityCycloaddition ReactionMolecular Structure010405 organic chemistrymolecular electron density theoryOrganic ChemistryCycloaddition0104 chemical scienceschemistryChemistry (miscellaneous)ElectrophileQuantum TheoryThermodynamicsMolecular MedicineDensity functional theoryImineselectron localisation functionAzo Compoundschemical reactivityMolecules; Volume 22; Issue 5; Pages: 750
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A Molecular Electron Density Theory Study of the Chemoselectivity, Regioselectivity, and Diastereofacial Selectivity in the Synthesis of an Anticance…

2019

The [3 + 2] cycloaddition (32CA) reaction of an &alpha

Models Molecular[3 + 2] cycloaddition reactionsDouble bondNitrilePharmaceutical ScienceAntineoplastic Agentsdiastereofacial selectivityArticleAnalytical Chemistrylcsh:QD241-441chemistry.chemical_compoundlcsh:Organic chemistryComputational chemistryDrug DiscoveryReactivity (chemistry)Physical and Theoretical ChemistryChemoselectivitychemistry.chemical_classificationCycloaddition ReactionMolecular StructureOrganic Chemistrymolecular electron density theoryRegioselectivityStereoisomerismIsoxazolesCycloadditionα-santoninchemistryChemistry (miscellaneous)regioselectivitynitrile oxidesMolecular MedicineDensity functional theorySantoninDerivative (chemistry)Molecules
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Density functional theory fragment descriptors to quantify the reactivity of a molecular family: Application to amino acids

2007

By using the exact density functional theory, one demonstrates that the value of the local electronic softness of a molecular fragment is directly related to the polarization charge (Coulomb hole) induced by a test electron removed (or added) from (at) the fragment. Our finding generalizes to a chemical group a formal relation between these molecular descriptors recently obtained for an atom in a molecule using an approximate atomistic model [P. Senet and M. Yang, J. Chem. Sci. 117, 411 (2005)]. In addition, a practical ab initio computational scheme of the Coulomb hole and related local descriptors of reactivity of a molecular family having in common a similar fragment is presented. As a b…

Models Molecularchemistry.chemical_classificationQuantitative Biology::BiomoleculesQuantitative structure–activity relationshipBinding SitesChemistryAb initioGeneral Physics and AstronomyAmino acidModels ChemicalAb initio quantum chemistry methodsComputational chemistryMolecular descriptorMoleculeComputer SimulationDensity functional theoryAmino AcidsPhysical and Theoretical ChemistryAlgorithmsFragment molecular orbitalProtein BindingThe Journal of Chemical Physics
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Structural and Theoretical Basis for Ligand Exchange on Thiolate Monolayer Protected Gold Nanoclusters

2012

Ligand exchange reactions are widely used for imparting new functionality on or integrating nanoparticles into devices. Thiolate-for-thiolate ligand exchange in monolayer protected gold nanoclusters has been used for over a decade; however, a firm structural basis of this reaction has been lacking. Herein, we present the first single-crystal X-ray structure of a partially exchanged Au(102)(p-MBA)(40)(p-BBT)(4) (p-MBA = para-mercaptobenzoic acid, p-BBT = para-bromobenzene thiol) with p-BBT as the incoming ligand. The crystal structure shows that 2 of the 22 symmetry-unique p-MBA ligand sites are partially exchanged to p-BBT under the initial fast kinetics in a 5 min timescale exchange reacti…

Models Molecularchemistry.chemical_classificationta114LigandMetal NanoparticlesBridging ligandGeneral ChemistryAssociative substitutionCrystal structureCrystallography X-RayLigandsBiochemistryArticleCatalysisNanoclustersCrystallographyColloid and Surface ChemistrychemistryMonolayerSolventsThiolThermodynamicsDensity functional theoryGoldJournal of the American Chemical Society
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Quantum Chemical Parametrization and Spectroscopic Characterization of the Frenkel Exciton Hamiltonian for a J-Aggregate Forming Perylene Bisimide Dye

2012

Quantum chemical and quantum dynamical calculations are performed for a bay-substituted perylene bisimide dye up to its hexameric aggregate. The aggregate structure is determined by employing the self-consistent charge density functional tight-binding (SCC-DFTB) approach including dispersion corrections. It is characterized by a stabilization via two chains of hydrogen bonds facilitated by amide functionalities. Focusing on the central embedded dimer, the Coulomb coupling for this J-aggregate is determined by means of the time-dependent density functional theory (TDDFT) to be -514 cm(-1). Exciton vibrational coupling is treated within the shifted oscillator model from which five strongly co…

Molecular StructureAbsorption spectroscopyChemistryExcitonCharge densityTime-dependent density functional theoryImideschemistry.chemical_compoundQuantum TheoryDensity functional theoryPhysical and Theoretical ChemistryAtomic physicsRotational–vibrational couplingPeryleneJ-aggregatePeryleneFluorescent DyesThe Journal of Physical Chemistry A
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Toward an Understanding of the Catalytic Role of Hydrogen-Bond Donor Solvents in the Hetero-Diels−Alder Reaction between Acetone and Butadiene Deriva…

2006

A detailed theoretical investigation of the catalytic role of hydrogen-bond- (HB-) donor molecules (water, methanol, chloroform, dichloromethane, and chloromethane) in the hetero-Diels-Alder reaction between acetone and N,N-dimethyl-1-amino-3-methoxy-1,3-butadiene is presented. This work extends a previous study (Domingo, L. R.; Andres, J. J. Org. Chem. 2003, 68, 8662) in which the importance of weak HB-donor solvents to catalyze more effectively than solvents with a higher dielectric constant but no HB-donor capability was analyzed. Now, based on density functional theory (DFT) at B3LYP/6-31+G(d) level calculations, different techniques for analyzing the nature of HB interaction, namely, n…

Molecular StructureHydrogen bondChloromethaneAtoms in moleculesHydrogen BondingInteraction energyCatalysisElectron localization functionAcetonechemistry.chemical_compoundModels ChemicalchemistryComputational chemistryButadienesSolventsQuantum TheoryMoleculeDensity functional theoryPhysical and Theoretical ChemistryEthersNatural bond orbitalThe Journal of Physical Chemistry A
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Experimental and DFT Studies on Competitive Heterocyclic Rearrangements. 3. A Cascade Isoxazole−1,2,4-Oxadiazole−Oxazole Rearrangement

2008

The thermal rearrangements of 3-acylamino-5-methylisoxazoles 1 have been investigated under basic and neutral conditions and interpreted with the support of computational data. The density functional theory (DFT) study on the competitive routes available for the base-catalyzed thermal rearrangement of isoxazoles 1 showed that the Boulton-Katritzky (BK) rearrangement, producing the less stable 3-acetonyl-1,2,4-oxadiazoles 5, is a much more favored process than either the migration-nucleophilic attack-cyclization (MNAC) or the ring contraction-ring expansion (RCRE). In turn, an increase in reaction temperature will promote the MNAC of oxadiazoles 5, producing the more stable 2-acylaminooxazol…

Molecular StructureStereochemistryOrganic ChemistryTemperatureOxadiazoleStereoisomerismRing (chemistry)Turn (biochemistry)chemistry.chemical_compoundModels ChemicalchemistryCyclizationComputational chemistryCascadeComputer SimulationDensity functional theoryIsoxazoleOxazolesOxazoleCope rearrangementThe Journal of Organic Chemistry
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Ferroelectric polarization switching induced from water adsorption in BaTiO 3 ultrathin films

2020

The influence of water on the out-of-plane polarization of ${\mathrm{BaTiO}}_{3}$ (BTO) ultrathin films is studied by means of density functional theory calculations. The adsorption is investigated for different coverages on both terminations of BTO with, for each case, all possible states of polarization, namely, paraelectric, polarized upward, and polarized downward. We thus demonstrate different behavior as a function of the termination. While ${\mathrm{H}}_{2}\mathrm{O}$ adsorbs only dissociatively on the BaO termination, with a reinforced interaction compared to BTO without out-of-plane polarization, only molecular adsorption is observed on the ${\mathrm{TiO}}_{2}$ termination. In addi…

Molecular adsorptionMaterials scienceCondensed matter physics02 engineering and technologyDielectric021001 nanoscience & nanotechnology01 natural sciencesFerroelectricity[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistryCondensed Matter::Materials ScienceAdsorption0103 physical sciences[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci][CHIM]Chemical SciencesDensity functional theory010306 general physics0210 nano-technologyPolarization (electrochemistry)ComputingMilieux_MISCELLANEOUS
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Effect of ion exchange capacity and water uptake on hydroxide transport in PSU-TMA membranes: A DFT and molecular dynamics study

2020

Abstract Anion Exchange Membranes (AEMs) are nowadays used in a very wide range of different applications, from electrodialytic systems for water treatment, to Fuel Cells for energy generation. In many of these cases, the AEM is in contact with water molecules, either in aqueous or gas phase, which can strongly interact with the AEM polymer, thus affecting membrane properties. The role of water in fully swollen AEM and its effect on the diffusion of hydroxide is the focus of this work. Density Functional Theory (DFT) based calculations were merged with Molecular Dynamics (MD) simulations coming to a more accurate description of the ionic exchange capacity effect on the hydroxide ion diffusi…

Molecular dynamicWater uptakeSettore ING-IND/26 - Teoria Dello Sviluppo Dei Processi ChimiciMaterials scienceIon exchange capacityThermodynamicsFiltration and Separation02 engineering and technology010402 general chemistry01 natural sciencesBiochemistryIonchemistry.chemical_compoundAlkaline anion exchange membrane fuel cellsGeneral Materials SciencePhysical and Theoretical ChemistryDiffusion (business)Ion exchange membraneAqueous solutionIon exchange021001 nanoscience & nanotechnology0104 chemical sciencesMembranechemistryDensity functional theoryHydroxideDensity functional theory0210 nano-technology
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Quantitative Analysis of the Interactions of Metal Complexes and Amphiphilic Systems: Calorimetric, Spectroscopic and Theoretical Aspects.

2022

Metals and metal-based compounds have many implications in biological systems. They are involved in cellular functions, employed in the formation of metal-based drugs and present as pollutants in aqueous systems, with toxic effects for living organisms. Amphiphilic molecules also play important roles in the above bio-related fields as models of membranes, nanocarriers for drug delivery and bioremediating agents. Despite the interest in complex systems involving both metal species and surfactant aggregates, there is still insufficient knowledge regarding the quantitative aspects at the basis of their binding interactions, which are crucial for extensive comprehension of their behavior in sol…

Molecular dynamics simulationsSpeciationCalorimetryBiochemistryBiological membraneAmphiphilic systemsKineticsMetal complexesSpectrophotometrySettore CHIM/03 - Chimica Generale E InorganicaCoordination ComplexesMetalsSolution thermodynamicsDensity functional theory calculationsDrug deliveryIsothermal titration calorimetryThermodynamicsMolecular Biologymetal complexes; amphiphilic systems; drug delivery; biological membrane; solution thermodynamics; speciation; isothermal titration calorimetry; spectrophotometry; molecular dynamics simulations; density functional theory calculationsBiomolecules
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