Search results for "Dye"

showing 10 items of 577 documents

Characterization of the interaction between Actinin-Associated LIM Protein (ALP) and the rod domain of α-actinin

2009

Abstract Background The PDZ-LIM proteins are a family of signalling adaptors that interact with the actin cross-linking protein, α-actinin, via their PDZ domains or via internal regions between the PDZ and LIM domains. Three of the PDZ-LIM proteins have a conserved 26-residue ZM motif in the internal region, but the structure of the internal region is unknown. Results In this study, using circular dichroism and nuclear magnetic resonance (NMR), we showed that the ALP internal region (residues 107–273) was largely unfolded in solution, but was able to interact with the α-actinin rod domain in vitro, and to co-localize with α-actinin on stress fibres in vivo. NMR analysis revealed that the ti…

Circular dichroismPDZ domaineducationAmino Acid MotifsMolecular Sequence DataPlasma protein bindingActininmacromolecular substancesBiology03 medical and health sciences0302 clinical medicineCell Line TumorHumansActininAmino Acid Sequencelcsh:QH573-671Peptide sequenceActin030304 developmental biologyLIM domainFluorescent Dyes0303 health scienceslcsh:CytologyMicrofilament ProteinsCell BiologyLIM Domain ProteinsSurface Plasmon Resonancemusculoskeletal systemRecombinant ProteinsCell biologyProtein Structure TertiaryLHX3Peptides030217 neurology & neurosurgeryResearch ArticleProtein BindingBMC Cell Biology
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Structural characterisation of the natural membrane-bound state of melittin: a fluorescence study of a dansylated analogue

1997

Abstract The binding of a dansylated analogue of melittin (DNC–melittin) to natural membranes is described. The cytolytic peptide from honey bee venom melittin was enzymatically labelled in its glutamine-25 with the fluorescent probe monodansylcadaverine using guinea pig liver transglutaminase. The labelled peptide was characterised functionally in cytolytic assays, and spectroscopically by circular dichroism and fluorescence. The behaviour of DNC–melittin was, in all respects, indistinguishable from that of the naturally occurring peptide. We used resonance energy transfer to measure the state of aggregation of melittin on the membrane plane in synthetic and natural lipid bilayers. When bo…

Circular dichroismProtein ConformationGlutamineGuinea PigsLipid BilayersBiophysicsPeptideHemolysiscomplex mixturesBiochemistryMelittinchemistry.chemical_compoundCadaverinePhosphatidylcholineAnimalsHumansLipid bilayerFluorescent Dyeschemistry.chemical_classificationBinding SitesTransglutaminasesCircular DichroismDansyl labelingtechnology industry and agricultureMembrane structureMelittinFluorescence energy transferCell BiologyMelittenFluorescenceSpectrometry FluorescenceMembraneEnergy TransferLiverBiochemistrychemistryBiophysicslipids (amino acids peptides and proteins)Natural membraneLipid-protein interactionProtein BindingBiochimica et Biophysica Acta (BBA) - Biomembranes
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Organelle pH studies using targeted avidin and fluorescein–biotin

2000

Abstract Background: Mammalian organelles of the secretory pathway are of differing pH. The pH values form a decreasing gradient: the endoplasmic reticulum (ER) is nearly neutral, the Golgi is mildly acidic and the secretory granules are more acidic still (∼pH 5). The mechanisms that regulate pH in these organelles are still unknown. Results: Using a novel method, we tested whether differences in H + ‘leak' and/or counterion conductances contributed to the pH difference between two secretory pathway organelles. A pH-sensitive, membrane-permeable fluorescein–biotin was targeted to endoplasmic-reticulum- and Golgi-localized avidin-chimera proteins in HeLa cells. In live, intact cells, ER pH (…

Clinical BiochemistryBiotinGolgi ApparatusEndoplasmic ReticulumBiochemistrysymbols.namesakechemistry.chemical_compoundChloridesBiotinOrganelleDrug DiscoveryHumansMicroscopy ImmunoelectronMolecular BiologySecretory pathwayFluorescent DyesOrganellesPharmacologyIon TransportFlubi-2ChemistryEndoplasmic reticulumBafilomycinIntracellular MembranesGeneral MedicineHydrogen-Ion ConcentrationProton PumpsGolgi apparatusAvidinCytosolTargeted fluorescenceMembraneBiochemistryH+ pumpPotassiumsymbolsMolecular MedicineFluoresceinHeLa CellsH+ leakChemistry & Biology
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Probes for studying cholesterol binding and cell biology.

2011

Cholesterol is a multifunctional lipid in eukaryotic cells. It regulates the physical state of the phospholipid bilayer, is crucially involved in the formation of membrane microdomains, affects the activity of many membrane proteins, and is the precursor for steroid hormones and bile acids. Thus, cholesterol plays a profound role in the physiology and pathophysiology of eukaryotic cells. The cholesterol molecule has achieved evolutionary perfection to fulfill its different functions in membrane organization. Here, we review basic approaches to explore the interaction of cholesterol with proteins, with a particular focus on the high diversity of fluorescent and photoreactive cholesterol prob…

Clinical BiochemistryLipid BilayersBiologyBiochemistryCell membranechemistry.chemical_compoundEndocrinologyMembrane MicrodomainsmedicineAnimalsHumansLipid bilayerMolecular BiologyPhospholipidsG protein-coupled receptorFluorescent DyesPharmacologyCyclodextrinsBinding SitesCholesterolOrganic ChemistryCholesterol bindingCell MembraneMembrane ProteinsSterolSterol regulatory element-binding proteinCell biologymedicine.anatomical_structureCholesterolEukaryotic CellsMembrane proteinBiochemistrychemistryMolecular Probeslipids (amino acids peptides and proteins)Steroids
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Applying the Techniques on Materials I

2012

The knowledge of the composition of the natural dye mixtures gives hints on appropriate procedures for restoration strategies. Identification of the dyes used, the establishment of their biological source, how they have been prepared, how these historical textiles were made, can provide important information. The dyestuffs used up to nineteenth century were either of plant (weld, madder, indigo, etc.) or animal origin (cochineal, shellfish, etc.) and belonged to various chemical types, such as flavonoids (yellow), anthraquinones (red) and indigoids (blue and violet). In this study microsamples (19) were examined from 11 Mevlana’s kaftans, dervishs’ dresses and dated from the thirteenth cent…

CochinealChromatographybiologyChemistryExtraction methodsbiology.organism_classificationAnimal originNatural dyeIndigo
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Thalamic Network Oscillations Synchronize Ontogenetic Columns in the Newborn Rat Barrel Cortex

2013

Neocortical areas are organized in columns, which form the basic structural and functional modules of intracortical information processing. Using voltage-sensitive dye imaging and simultaneous multi-channel extracellular recordings in the barrel cortex of newborn rats in vivo, we found that spontaneously occurring and whisker stimulation-induced gamma bursts followed by longer lasting spindle bursts were topographically organized in functional cortical columns already at the day of birth. Gamma bursts synchronized a cortical network of 300-400 µm in diameter and were coherent with gamma activity recorded simultaneously in the thalamic ventral posterior medial (VPM) nucleus. Cortical gamma b…

Cognitive NeuroscienceOntogenyThalamusAction PotentialsStimulation610 Medicine & healthStatistics NonparametricElectrolytesCellular and Molecular NeuroscienceBiological ClocksReaction TimeExtracellularmedicineAnimalsAnesthetics Local610 Medicine & healthFeedback PhysiologicalBrain MappingVentral Thalamic NucleiChemistryLidocaineSomatosensory CortexBarrel cortexElectric StimulationVoltage-Sensitive Dye ImagingNetwork activityRatsmedicine.anatomical_structureAnimals NewbornCortical networkVibrissaeNerve NetNeuroscienceNucleus
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Conception et synthèse de nouvelles sondes fluorogéniques à coeur Bodipy pour la détection

2020

Therefore this project is aimed at the development of novel improved multi-analyte fluorogenic probes for heavy metals ions and bioanalytes within the framework “AND” fluorescent molecular logic gates concept. The biothiols and cations of Cd(II), Pb(II), Cr(III) and Cu(II) heavy metals will be selected as the targeted analytes. To the best of our knowledge, no “AND” molecular logic gates using metal ions besides Zn(II), Hg(II), Ca(II) inputs, likewise no multi-analyte probes for biothiols along with heavy metal cations, has been described in the literature. While the development of a highly sensitive and selective recognition of thiols and metal cations has emerged as a significant interest…

Colorants BodipySmart probes[CHIM.CRIS]Chemical Sciences/CristallographySondes intelligentes[CHIM.CRIS] Chemical Sciences/CristallographyFluorescenceBodipy dyes
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Formation, Detection and Trapping of Photoassociated Ultracold KRb Molecules

2005

Ultracold ground-state KRb molecules are formed by photoassociation and detected by resonant two-photon ionization. We have assigned both the photoassociation spectrum and the detection laser spectrum, and we have demonstrated magnetic trapping of triplet KRb

Condensed Matter::Quantum GasesPhysicsDye laserCondensed Matter::OtherTrappingLaserlaw.inventionlawIonizationPhysics::Atomic and Molecular ClustersMoleculePhysics::Atomic PhysicsAtomic physicsTriplet state2005 Quantum Electronics and Laser Science Conference
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Dynamic preparation of TiO2 films for fabrication of dye-sensitized solar cells

2006

Preparation of nanocrystalline porous titanium dioxide (TiO2) films with roll-to-roll compatible methods was studied. Gravure printing was used for spreading TiO2 paste and paper calendering for pressing TiO2 nanoparticle films. Influence of different preparation methods on performance of fabricated dye-sensitized solar cells (DSSCs) was investigated. The attained light into electricity conversion efficiency was compared with DSSCs fabricated on conductive plastic substrates by doctor-blading spreading with subsequent static pressing. The latter method achieved a light conversion efficiency as high as 5.1%. The efficiency of the cells with a gravure printed TiO2 film was found to be rather …

Conductive polymerFabricationbusiness.industryChemistrytitanium dioxideGeneral Chemical EngineeringEnergy conversion efficiencydynamic pressGeneral Physics and AstronomyGeneral ChemistryNanocrystalline materialRoll-to-roll processingCalenderingDye-sensitized solar cellchemistry.chemical_compoundcalendergravureTitanium dioxidedye-sensitized solar cellsolar cellsOptoelectronicsroll-to-rollbusiness
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In Vivo Imaging of Enteric Neuronal Networks in Humans Using Confocal Laser Endomicroscopy

2012

Confocal laser endomicroscopyPathologymedicine.medical_specialtyMicroscopy ConfocalHepatologyGastrointestinal Diseasesbusiness.industryConfocalGastroenterologyColonic PolypsMyenteric PlexusColonoscopySubmucous PlexusMicroscopymedicineHumansEnteric nervous systemAcriflavineNerve NetGastrointestinal MotilitybusinessPreclinical imagingFluorescent DyesGastroenterology
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