Search results for "EB"

showing 10 items of 15658 documents

Comment on the letter of the Society of Vertebrate Paleontology (SVP) dated April 21, 2020 regarding “Fossils from conflict zones and reproducibility…

2020

International audience

0106 biological sciences010506 paleontologyNETHERLANDSARTHROPITYS-BISTRIATAAREACENTRAL-EUROPEPaleontologyPERMIAN PETRIFIED FORESTSAAR-NAHE BASIN010603 evolutionary biology01 natural sciencesArchaeologyPaleontologíaBALTIC AMBEREvoluciónGeographyPARNAIBA BASINSaar–Nahe BasinTHEROPOD DINOSAURBaltic amberDECAPODAVertebrate paleontology[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/PaleontologyComputingMilieux_MISCELLANEOUS0105 earth and related environmental sciences
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Developmental aspects of morphological disparity dynamics: a simple analytical exploration

2011

15 pages; International audience; We devised a simple model for assessing the role of development in shaping the evolution of morphological disparity. Disparity of a clade at any given time is expressed in terms of the developmental dynamics that lead to the variety of adult morphotypes observed. We use assumed phenotypic manifestations of developmental processes, as they could be detected from allometric characterizations, to distinguish a few, nonexclusive types of evolutionary changes in ontogeny. On the basis of this formalization, we describe the diversification of hypothetical clades, using the standard curve of adult morphological disparity, the curve of juvenile disparity, and the c…

0106 biological sciences010506 paleontologyOntogenyeducationBiology010603 evolutionary biology01 natural sciences[ SDV.BDD.MOR ] Life Sciences [q-bio]/Development Biology/Morphogenesisfluids and secretionsSimple (abstract algebra)parasitic diseasesCladeEcology Evolution Behavior and Systematics[ SDU.STU.PG ] Sciences of the Universe [physics]/Earth Sciences/Paleontology0105 earth and related environmental sciences[ SDV.BID ] Life Sciences [q-bio]/BiodiversityEcologyEcologyPaleontology[SDV.BDD.MOR] Life Sciences [q-bio]/Development Biology/Morphogenesisbody regionsDevelopmental dynamicsAdult sizeEvolutionary biologyMetric (mathematics)[SDU.STU.PG] Sciences of the Universe [physics]/Earth Sciences/PaleontologyAllometryGeneral Agricultural and Biological Sciences[SDV.BID] Life Sciences [q-bio]/BiodiversityPaleobiology
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Functional assessment of morphological homoplasy in stem-gnathostomes

2021

Osteostraci and Galeaspida are stem-gnathostomes, occupying a key phylogenetic position for resolving the nature of the jawless ancestor from which jawed vertebrates evolved more than 400 million years ago. Both groups are characterized by the presence of rigid headshields that share a number of common morphological traits, in some cases hindering the resolution of their interrelationships and the exact nature of their affinities with jawed vertebrates. Here, we explore the morphological and functional diversity of osteostracan and galeaspid headshields using an innovative approach that combines geometric morphometrics and computational fluid dynamics, thereby constraining the underlying fa…

0106 biological sciences010506 paleontologycomputational fluid dynamicsPaleontologia010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyAnimalsgeometric morphometricsPhylogeny0105 earth and related environmental sciencesGeneral Environmental ScienceAncestorGeneral Immunology and MicrobiologybiologyPhylogenetic treehomoplasyGeneral Medicinebiology.organism_classificationBiological EvolutionGaleaspidaOsteostraciJawPalaeobiologyEvolutionary biologyVertebratesvertebratesGeneral Agricultural and Biological Sciencesstem-gnathostomes
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Cranial bone histology of Metoposaurus krasiejowensis (Amphibia, Temnospondyli) from the Late Triassic of Poland

2016

In this study, 21 skull bones ofMetoposaurus krasiejowensisfrom the Late Triassic of Poland were investigated histologically. Dermal bones show a diploë structure, with an ornamented external surface. The ridges consist of mostly well vascularized parallel-fibered bone; the valleys are built of an avascular layer of lamellar bone. The thick middle region consists of cancellous bone, with varying porosity. The thin and less vascularized internal cortex consists of parallel-fibered bone. The numerous Sharpey’s fibers and ISF are present in all bones. The cyclicity of growth is manifested as an alternation of thick, avascular annuli and high vascularized zones as well as a sequence of resting …

0106 biological sciences010506 paleontologylcsh:MedicineMetoposaurus010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyCondylemedicineEndochondral ossification0105 earth and related environmental sciencesbiologyOssificationDermal bonesGeneral NeuroscienceSkulllcsh:RTemnospondyliGeneral MedicineAnatomybiology.organism_classificationMicroanatomySkullmedicine.anatomical_structureGrowth patternmedicine.symptomGeneral Agricultural and Biological SciencesCancellous boneVertebral columnPeerJ
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Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viri…

2019

Published version, available at: https://doi.org/10.1371/journal.pone.0210358 Ocean acidification threatens to disrupt interactions between organisms throughout marine ecosystems. The diversity of reef-building organisms decreases as seawater CO2 increases along natural gradients, yet soft-bodied animals, such as sea anemones, are often resilient. We sequenced the polyA-enriched transcriptome of adult sea anemone Anemonia viridis and its dinoflagellate symbiont sampled along a natural CO2 gradient in Italy to assess stress levels in these organisms. We found that about 1.4% of the anemone transcripts, but only ~0.5% of the Symbiodinium sp. transcripts were differentially expressed. Processe…

0106 biological sciences0301 basic medicineAtmospheric ScienceMolecular biologyMarine and Aquatic SciencesGene ExpressionRetrotransposonSea anemone01 natural sciencesAnemoniaSequencing techniquesMobile Genetic ElementsMultidisciplinarybiologyQREukaryotaOcean acidificationAnemoneRNA sequencingGenomicsChemistryRetrotransposonsPhysical SciencesMedicineTranscriptome AnalysisResearch ArticleScienceZoology010603 evolutionary biology03 medical and health sciencesGreenhouse GasesCnidariaGenetic ElementsSea WaterGeneticsVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470Environmental ChemistryAnimalsMarine ecosystemBiology and life sciencesEcology and Environmental SciencesDinoflagellateChemical CompoundsOrganismsTransposable ElementsCorrectionAquatic EnvironmentsComputational BiologyCarbon Dioxidebiology.organism_classificationGenome AnalysisMarine EnvironmentsInvertebratesVDP::Mathematics and natural science: 400::Basic biosciences: 470Research and analysis methods:Genetikk og genomikk: 474 VDP::Marinbiologi:497 VDP::Økologi:488 [VDP]030104 developmental biologySea AnemonesMolecular biology techniquesAtmospheric ChemistryEarth SciencesSeawater
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Survival and gene expression under different temperature and humidity regimes in ants

2017

Short term variation in environmental conditions requires individuals to adapt via changes in behavior and/or physiology. In particular variation in temperature and humidity are common, and the physiological adaptation to changes in temperature and humidity often involves alterations in gene expression, in particular that of heat-shock proteins. However, not only traits involved in the resistance to environmental stresses, but also other traits, such as immune defenses, may be influenced indirectly by changes in temperature and humidity. Here we investigated the response of the ant F. exsecta to two temperature regimes (20 degrees C & 25 degrees C), and two humidity regimes (50% & 75%), for…

0106 biological sciences0301 basic medicineAtmospheric ScienceympäristöAcclimatizationGene Expressionlcsh:MedicinemuutosALFALFA LEAFCUTTING BEEBiochemistryImmune Receptors01 natural sciencesEndocrinologyACCLIMATIONmuurahaisetGene expressionMedicine and Health SciencesIMMUNE-RESPONSEInsulinTRANSCRIPTIONgeeniekspressiolcsh:SciencePOPULATIONHeat-Shock ProteinsProtein MetabolismsopeutuminenPrincipal Component Analysiseducation.field_of_studyImmune System ProteinsMultidisciplinaryBehavior AnimalEcologyolosuhteetTemperaturefood and beveragesANThumanitiesInsectsimmuunijärjestelmä1181 Ecology evolutionary biologyPhysical SciencesMEGACHILE-ROTUNDATAlämpötilaympäristönmuutoksetResearch ArticleNutrient and Storage ProteinsSignal TransductionArthropodaImmunologyPopulationZoologyBiology010603 evolutionary biologyAcclimatization03 medical and health sciencesMeteorologyTwo temperatureStress PhysiologicalGeneticsAnimalseducationGeneProportional Hazards ModelsDiabetic EndocrinologyAntsBEAUVERIA-BASSIANAGene Expression Profilinglcsh:ROrganismshumidityBiology and Life SciencesProteinsHumiditytemperatureHumidityEigenvaluesCell BiologyDESICCATIONInvertebratesHymenopteraHormonesMetabolismAlgebra030104 developmental biologyGene Expression RegulationLinear AlgebraDROSOPHILA-MELANOGASTERkosteusEarth Sciencesgene expressionta1181lcsh:QFormica exsectaDesiccationRESISTANCEMathematics
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Comparative Mitogenomics of Leeches (Annelida: Clitellata): Genome Conservation and Placobdella-Specific trnD Gene Duplication.

2015

Mitochondrial DNA sequences, often in combination with nuclear markers and morphological data, are frequently used to unravel the phylogenetic relationships, population dynamics and biogeographic histories of a plethora of organisms. The information provided by examining complete mitochondrial genomes also enables investigation of other evolutionary events such as gene rearrangements, gene duplication and gene loss. Despite efforts to generate information to represent most of the currently recognized groups, some taxa are underrepresented in mitochondrial genomic databases. One such group is leeches (Annelida: Hirudinea: Clitellata). Herein, we expand our knowledge concerning leech mitochon…

0106 biological sciences0301 basic medicineClitellatalcsh:MedicineBiochemistry01 natural sciencesGenomeDatabase and Informatics MethodsRNA TransferGene DuplicationGene OrderInvertebrate GenomicsGene duplicationAnnelidslcsh:SciencePhylogenyEnergy-Producing OrganellesData ManagementGeneticseducation.field_of_studyMultidisciplinaryPhylogenetic treePhylogenetic AnalysisGenomicsGenomic DatabasesMitochondriaNucleic acidsPhylogeneticsGenes MitochondrialPlacobdella parasiticaCellular Structures and OrganellesTransfer RNAResearch ArticleComputer and Information SciencesMitochondrial DNAPopulationBioenergeticsBiologyResearch and Analysis Methods010603 evolutionary biologyEvolution MolecularOpen Reading Frames03 medical and health sciencesPhylogeneticsLeechesGeneticsAnimalsEvolutionary Systematics14. Life underwaterCodonMolecular Biology TechniquesNon-coding RNAeducationMolecular BiologyTaxonomyMolecular Biology Assays and Analysis TechniquesEvolutionary Biologylcsh:ROrganismsBiology and Life SciencesComputational BiologyCell BiologyGenome Analysisbiology.organism_classificationInvertebratesBiological Databases030104 developmental biologyAnimal GenomicsGenome MitochondrialRNAlcsh:QPLoS ONE
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Parallel diversifications of Cremastosperma and mosannona (annonaceae), tropical rainforest trees tracking neogene upheaval of South America

2018

Much of the immense present day biological diversity of Neotropical rainforests originated from the Miocene onwards, a period of geological and ecological upheaval in South America. We assess the impact of the Andean orogeny, drainage of Lake Pebas and closure of the Panama isthmus on two clades of tropical trees ( Cremastosperma , ca 31 spp.; and Mosannona , ca 14 spp.; both Annonaceae). Phylogenetic inference revealed similar patterns of geographically restricted clades and molecular dating showed diversifications in the different areas occurred in parallel, with timing consistent with Andean vicariance and Central American geodispersal. Ecological niche modelling approaches show phyloge…

0106 biological sciences0301 basic medicineDIVERSITY01 natural sciencesNiche modellingDISPERSALlcsh:ScienceMultidisciplinarybiologyEcologyAmazon rainforest70Biology (Whole Organism)ANDEAN UPLIFTPE&RCBiosystematieknicheGeographyGeodispersalinternationalISTHMUSMolecular datingCLADESPebas systemResearch Article1001Neotropics201004PHYLOGENY RECONSTRUCTIONRainforest010603 evolutionary biologymodelling03 medical and health sciencesHISTORICAL BIOGEOGRAPHYDIVERGENCEVicarianceSPECIATIONLaboratorium voor NematologieEcological nicheAndean orogenyAndean orogenyBiology and Life Sciencesbiology.organism_classificationEVOLUTION030104 developmental biologyMosannonaPanama isthmusBiosystematicslcsh:QEPSLaboratory of NematologyTropical rainforestRoyal Society Open Science
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De novo transcriptome assembly and developmental mode specific gene expression of Pygospio elegans

2017

Species with multiple different larval developmental modes are interesting models for the study of mechanisms underlying developmental mode transitions and life history evolution. Pygospio elegans, a small, tube-dwelling polychaete worm commonly found in estuarine and marine habitats around the northern hemisphere, is one species with variable developmental modes. To provide new genomic resources for studying P. elegans and to address the differences in gene expression between individuals producing offspring with different larval developmental modes, we performed whole transcriptome Illumina RNA sequencing of adult worms from two populations and prepared a de novo assembly of the P. elegans…

0106 biological sciences0301 basic medicineDe novo transcriptome assemblySequence assemblyBiology010603 evolutionary biology01 natural sciencesTranscriptome03 medical and health sciencesGene expressionAnimalsgeeniekspressioGenes Developmental14. Life underwaterEcology Evolution Behavior and SystematicsGeneticsLarvaPolychaeteGene Expression ProfilingfungiGene Expression Regulation DevelopmentalRNAMolecular Sequence AnnotationPolychaetaMarine invertebratesbiology.organism_classification030104 developmental biologyLarvagene expressionta1181TranscriptomeMicrosatellite RepeatsDevelopmental BiologyEvolution & Development
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Vertebrate defense against parasites: Interactions between avoidance, resistance, and tolerance

2017

Hosts can utilize different types of defense against the effects of parasitism, including avoidance, resistance, and tolerance. Typically, there is tremendous heterogeneity among hosts in these defense mechanisms that may be rooted in the costs associated with defense and lead to trade‐offs with other life‐history traits. Trade‐offs may also exist between the defense mechanisms, but the relationships between avoidance, resistance, and tolerance have rarely been studied. Here, we assessed these three defense traits under common garden conditions in a natural host–parasite system, the trematode eye‐fluke Diplostomum pseudospathaceum and its second intermediate fish host. We looked at host ind…

0106 biological sciences0301 basic medicineDefence mechanismsParasitismZoologyTrade-off010603 evolutionary biology01 natural sciencesresistance03 medical and health sciencesbiology.animaltrade‐offSalmoEcology Evolution Behavior and SystematicsOriginal ResearchNature and Landscape Conservationtrade-offtoleranceEcologybiologyResistance (ecology)host–parasite interactionEcologyHost (biology)parasite avoidanceVertebrateAquatic animalbiology.organism_classificationhost-parasite interaction030104 developmental biologyta1181Ecology and Evolution
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