Search results for "ELEMENTS"
showing 10 items of 799 documents
The targeted overexpression of SlCDF4 in the fruit enhances tomato size and yield involving gibberellin signalling
2020
AbstractTomato is one of the most widely cultivated vegetable crops and a model for studying fruit biology. Although several genes involved in the traits of fruit quality, development and size have been identified, little is known about the regulatory genes controlling its growth. In this study, we characterized the role of the tomato SlCDF4 gene in fruit development, a cycling DOF-type transcription factor highly expressed in fruits. The targeted overexpression of SlCDF4 gene in the fruit induced an increased yield based on a higher amount of both water and dry matter accumulated in the fruits. Accordingly, transcript levels of genes involved in water transport and cell division and expans…
Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viri…
2019
Published version, available at: https://doi.org/10.1371/journal.pone.0210358 Ocean acidification threatens to disrupt interactions between organisms throughout marine ecosystems. The diversity of reef-building organisms decreases as seawater CO2 increases along natural gradients, yet soft-bodied animals, such as sea anemones, are often resilient. We sequenced the polyA-enriched transcriptome of adult sea anemone Anemonia viridis and its dinoflagellate symbiont sampled along a natural CO2 gradient in Italy to assess stress levels in these organisms. We found that about 1.4% of the anemone transcripts, but only ~0.5% of the Symbiodinium sp. transcripts were differentially expressed. Processe…
Chironomus riparius(Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence
2016
AbstractActive transposable elements (TEs) may result in divergent genomic insertion and abundance patterns among conspecific populations. Upon secondary contact, such divergent genetic backgrounds can theoretically give rise to classical Dobzhansky-Muller incompatibilities (DMI), a way how TEs can contribute to the evolution of endogenous genetic barriers and eventually population divergence. We investigated whether differential TE activity created endogenous selection pressures among conspecific populations of the non-biting midgeChironomus riparius,focussing on aChironomus-specific TE, the minisatellite-likeCla-element, whose activity is associated with speciation in the genus. Using an …
Alu insertion polymorphisms in the African Sahel and the origin of Fulani pastoralists.
2017
The origin of Western African pastoralism, represented today by the Fulani nomads, has been a highly debated issue for the past decades, and has not yet been conclusively resolved.This study focused on Alu polymorphisms in sedentary and nomadic populations across the African Sahel to investigate patterns of diversity that can complement the existing results and contribute to resolving issues concerning the origin of West African pastoralism.A new dataset of 21 Alu biallelic markers covering a substantial part of the African Sahel has been analysed jointly with several published North African populations.Interestingly, with regard to Alu variation, the relationship of Fulani pastoralists to …
Diversion of Fishing Pressure on the Economically Important Species Barbus barbus (Linnaeus, 1758) to Protect the Community Interest Congeneric Barbu…
2018
Abstract The ADONIS:CE instrument has been used in the field of congeners species, Barbus barbus – of economic interest and Barbus meridionalis – of conservation interest, to build a support-system model for management decision-making. Analysis of the habitat needs and the indicators for favorable conservation status have identified pressures and threats to these fish species for which management actions have been proposed. This management system favors the decrease of fishing pressure on Barbus meridionalis species by its transfer to Barbus barbus species.
Management Elements for Two Alburninae Species, Alburnus alburnus (Linnaeus, 1758) and Alburnoides bipunctatus (Bloch, 1782) Based on a Decision-Supp…
2019
Abstract ADONIS:CE has been used as a base to create a support-system management decision-making model for Alburnus alburnus (Linnaeus, 1758) and Alburnoides bipunctatus (Bloch, 1782) species. Investigation of the habitat necessities and the identification of the necessary elements for a good status of conservation of these two fish species populations has revealed the pressures and threats to these congener species, for which specific management activities have been finally recommended.
Technical Solutions to Mitigate Shifting Fish Fauna Zones Impacted by Long Term Habitat Degradation in the Bistra Mărui River – Study Case
2018
Abstract The Bistra Mărului River fish fauna has been severely impacted by man-made activities, especially through longitudinal fragmentation, over the past 40 years. Fish fauna monitoring revealed structural changes and technical methods have been proposed, in order to restore the natural connectivity and the conservation of fish species. Benefits should accrue for key species: Salmo trutta fario, Cottus gobio, Thymallus thymallus, Eudontomyzon danfordi, Eudontomyzon vladykovi, Gobio uranoscopus, Barbus meridionalis, and Condrostoma nasus.
Diet and habitat use influence Hg and Cd transfer to fish and consequent biomagnification in a highly contaminated area: Augusta Bay (Mediterranean S…
2016
Abstract Total mercury (T-Hg) and cadmium (Cd) were measured in twenty species of fish to study their bioaccumulation patterns and trophodynamics in the Augusta Bay food web. Adult and juvenile fish were caught in 2012 in Priolo Bay, south of the Augusta harbour (Central Mediterranean Sea), which is known for the high trace element and polycyclic aromatic hydrocarbon contamination level. T-Hg concentration was found to significantly increase along δ15N and from pelagic to benthic sedentary fish, revealing a marked influence of trophic position and habitat use (sensu Harmelin 1987) on T-Hg accumulation within ichthyofauna. Cd showed the opposite pattern, in line with the higher trace element…
Virus epidemics can lead to a population-wide spread of intragenomic parasites in a previously parasite-free asexual population
2014
Sexual reproduction is problematic to explain due to its costs, most notably the twofold cost of sex. Yet, sex has been suggested to be favourable in the presence of proliferating intragenomic parasites given that sexual recombination provides a mechanism to confine the accumulation of deleterious mutations. Kraaijeveld et al. compared recently the accumulation of transposons in sexually and asexually reproducing lines of the same species, the parasitoid wasp Leptopilina clavipes. They discovered that within asexually reproducing wasps, the number of gypsy-like retrotransposons was increased fourfold, whereas other retrotransposons were not. Interestingly, gypsy-like retrotransposons are cl…
Analysis of plant diversity with retrotransposon-based molecular markers
2010
Retrotransposons are both major generators of genetic diversity and tools for detecting the genomic changes associated with their activity because they create large and stable insertions in the genome. After the demonstration that retrotransposons are ubiquitous, active and abundant in plant genomes, various marker systems were developed to exploit polymorphisms in retrotransposon insertion patterns. These have found applications ranging from the mapping of genes responsible for particular traits and the management of backcrossing programs to analysis of population structure and diversity of wild species. This review provides an insight into the spectrum of retrotransposon-based marker syst…