Search results for "ENERGETICS"
showing 10 items of 112 documents
Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family.
2016
Reconstructing the transition from a single compartment bacterium to a highly compartmentalized eukaryotic cell is one of the most studied problems of evolutionary cell biology. However, timing and details of the establishment of compartmentalization are unclear and difficult to assess. Here, we propose the use of molecular markers specific to cellular compartments to set up a framework to advance the understanding of this complex intracellular process. Specifically, we use a protein family related to ribosome biogenesis, YRG (YlqF related GTPases), whose evolution is linked to the establishment of cellular compartments, leveraging the current genomic data. We analyzed orthologous proteins …
Thermochemical analysis of the OH+C2H4→C2H4OH reaction using accurate theoretical methods
2001
Abstract The radical addition of hydroxyl radical to ethene has been investigated using ab initio methods and density functional theory. The structure and energetics of reactants, prereaction complex, transition state structure and radical product have been optimized and vibrational frequencies have been calculated at the HF, MP2, B88, and B3LYP level using 6-31G* and 6-311G** basis sets. The energetics of the reaction is characterized within the MP2, DFT, G2, CBS, and BAC approaches. The evolution of the barrier height and reaction enthalpy has been systematically investigated with respect to the methodological approach employed. The best agreement with experimental results for the barrier…
The Effect of Nicotinamide on Microcirculatory Function, Tissue Oxygenation and Bioenergetic Status in Rat Tumors
1994
The failure of many attempts to improve tumor oxygenation - and thus the outcome of standard radiotherapy - may be due to the fact that the occurrence of hypoxia in tumors is not solely a result of diffusion-limited “chronic” hypoxia but is also due to temporary flow cessations in microregional tumor perfusion which have been shown to occur in tumor tissue1. As a result, attempts have more recently been made to reduce hypoxia in tumors through the reduction of tumor perfusion fluctuations. The benzamide analog nicotinamide is an agent which has recently received attention in this respect. It has been reported to be an effective, tumor-specific radiosensitizer in several tumor models, an eff…
Causes and Consequences of Damage to Mitochondria: Study of Functional Aspects by Flow Cytometry
2003
A rapidly increasing amount of data supports the view that progressive bioenergetic loss caused by injury of the main energy-producing subcellular organelles, that is, the mitochondria, plays a key role in aging. A link between senescence and energy loss is already implied in Harman's (1) free radical theory of aging, according to which oxygen-derived free radicals injure the cells, with concomitant impairment of performance at the cellular and physiological levels. Further, Miquel and co-workers (2, 3) have proposed a mitochondrial theory of aging, according to which aging results from oxygen stress damage to the mitochondrial genome, with concomitant bioenergetic decline. More recently, a…
Heart beat rate of invasive Brachidontes pharaonis with respect to the native Mytilaster minimus within the Mediterranean Sea at varying salinites
2011
Changes in heart beat rates (HBR) of Brachidontes pharaonis (an invasive Lessepsian species) and Mytilaster minimus (a native Mediterranean species) in response to changes in salinity values from brackish (20) to extreme hyper-saline (75) were investigated both in situ and in the laboratory. The two species displayed different responses to varying salinity, with clear differences in HBR observed between groups investigated at different salinities and between groups originating from different environments. The native species, adapted to narrow salinity changes as those observed in the superficial waters of the Mediterranean Sea, showed signs of stress at salinities slightly above 37 (in the …
Effect of feeding conditions on Brachidontes pharaonis (Mollusca, Bivalvia) respiration and growth rates
2010
Dynamic Energy Budget model parameter estimation for the bivalve Mytilus californianus: Application of the covariation method
2014
Dynamic Energy Budget (DEB) models serve as a powerful tool for describing the flow of energy through organisms from assimilation of food to utilization for maintenance, growth and reproduction. The DEB theory has been successfully applied to several bivalve species to compare bioenergetic and physiological strategies for the utilization of energy. In particular, mussels within the Mytilus edulis complex (M. edulis, M. galloprovincialis, and M. trossulus) have been the focus of many studies due to their economic and ecological importance, and their worldwide distribution. However, DEB parameter values have never been estimated for Mytilus californianus, a species that is an ecological domin…
Combining heat-transfer and energy budget models to predict local and geographic patterns of mortality in Mediterranean intertidal mussels
2011
Recent studies have emphasised that organisms can experience physiological stress well within their geographic range limits. Developing methods for mechanistically predicting the presence, absence and physiological performance of organisms is therefore important because of the ongoing effects of climate change. In this study, we merged a biophysical–ecological (BE) model that estimates the aquatic (high tide) and aerial (low tide) body temperatures of Mytilus galloprovincialis with a Dynamic Energy Budget (DEB) model to predict growth, reproduction and mortality of this Mediterranean mussel in both intertidal and subtidal environments. Using weather and chlorophyll-a data from three Mediter…
Predicting patterns of stress and mortality in intertidal invertebrates: applications of biophysical ecology in a changing world
2010
Abstract Background , Questions and Methods Recent studies have emphasized that local and geographic patterns of species distributions can be set by a variety of factors related to weather and climate, including exposure to lethal environmental conditions, indirect effects on consumers and competitors, and sublethal effects of physiological stress on growth and reproduction. Predicting where, when and with what magnitude these impacts are most (and least) likely to occur is imperative if we are to effectively plan for (i.e. adapt to) the effects of climate change.We developed a series of methods for translating patterns of environmental “signals” into organismal responses in intertidal ecos…