Search results for "Ecology and Environment"

showing 10 items of 114 documents

The shell of the invasive bivalve species Dreissena polymorpha: biochemical, elemental and textural Investigations.

2016

28 pages; International audience; The zebra mussel Dreissena polymorpha is a well-established invasive model organism. Although extensively used in environmental sciences, virtually nothing is known of the molecular process of its shell calcification. By describing the microstructure, geochemistry and biochemistry/proteomics of the shell, the present study aims at promoting this species as a model organism in biomineralization studies, in order to establish a bridge with ecotoxicology, while sketching evolutionary conclusions. The shell of D. polymorpha exhibits the classical crossed-lamellar/complex crossed lamellar combination found in several heterodont bivalves, in addition to an extern…

0301 basic medicinelcsh:MedicineInvasive Species010501 environmental sciencesProteomicsEcotoxicology01 natural sciencesBiochemistrychemistry.chemical_compoundDatabase and Informatics MethodsMaterials PhysicsLectinsMusselslcsh:ScienceMicrostructureGel ElectrophoresisStainingMineralsMultidisciplinarybiologyOrganic CompoundsPhysicsMonosaccharidesBiological EvolutionEuropeChemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Physical SciencesFranceSequence AnalysisResearch ArticleSilver StainingBivalvesMaterials ScienceShell (structure)CarbohydratesSequence DatabasesElectrophoretic StainingResearch and Analysis MethodsDreissenaDreissenaCoomassie Blue staining03 medical and health sciencesElectrophoretic TechniquesSpecies ColonizationAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Botany[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyEcotoxicologyAnimals[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular Biology14. Life underwaterShell calcificationMolecular Biology TechniquesSequencing Techniques[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biology[ SDV.BBM ] Life Sciences [q-bio]/Biochemistry Molecular Biology0105 earth and related environmental scienceslcsh:ROrganic ChemistryEcology and Environmental SciencesOrganismsChemical CompoundsBiology and Life SciencesProteinsMolluscs[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterialsbiology.organism_classificationInvertebrates030104 developmental biologyCalcium carbonateBiological DatabaseschemistrySpecimen Preparation and TreatmentZebra mussellcsh:QIntroduced SpeciesBiomineralization
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Unexpected associated microalgal diversity in the lichen Ramalina farinacea is uncovered by pyrosequencing analyses

2017

The current literature reveals that the intrathalline coexistence of multiple microalgal taxa in lichens is more common than previously thought, and additional complexity is supported by the coexistence of bacteria and basidiomycete yeasts in lichen thalli. This replaces the old paradigm that lichen symbiosis occurs between a fungus and a single photobiont. The lichen Ramalina farinacea has proven to be a suitable model to study the multiplicity of microalgae in lichen thalli due to the constant coexistence of Trebouxia sp. TR9 and T. jamesii in long-distance populations. To date, studies involving phycobiont diversity within entire thalli are based on Sanger sequencing, but this method see…

0301 basic medicinelcsh:MedicineLichenologyArtificial Gene Amplification and ExtensionPlant SciencePolymerase Chain ReactionDatabase and Informatics MethodsDiversity indexMicroalgaeCluster AnalysisDNA Fungallcsh:ScienceLichenPhylogenyData ManagementMultidisciplinaryEcologybiologyEcologyPhylogenetic AnalysisBiodiversitysymbiosisThallusPhylogeneticspyrosequencingLichenologyTrebouxiaSequence AnalysisResearch ArticleTrebouxiaComputer and Information SciencesBioinformaticsSequence DatabasesReal-Time Polymerase Chain ReactionResearch and Analysis MethodslichenRamalina farinacea03 medical and health sciencesAscomycotaAlgaelichen photobionts pyrosequencing symbiosis TrebouxiaBotanyEvolutionary SystematicsMolecular Biology TechniquesMolecular BiologyDNA sequence analysisTaxonomyEvolutionary BiologyEcology and Environmental Scienceslcsh:RGenetic VariationBiology and Life SciencesSequence Analysis DNAReverse Transcriptase-Polymerase Chain Reactionbiology.organism_classificationBiological Databases030104 developmental biologyphotobiontsPyrosequencinglcsh:QSequence AlignmentPLOS ONE
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Screening archaeological bone for palaeogenetic and palaeoproteomic studies.

2020

Funder: FP7 Ideas: European Research Council; funder-id: http://dx.doi.org/10.13039/100011199; Grant(s): 295729

1100Proteomics1300Social SciencesMarine and Aquatic Sciences01 natural sciencesBiochemistrySpectroscopy Fourier Transform InfraredLimnologyScreening method0303 health sciencesMultidisciplinaryAncient DNAChemistryFossilsQRFOS: Social sciencesNucleic acidsArchaeologyAttenuated total reflectionMedicinePhysical AnthropologyOrganic contentResearch Article1000010506 paleontologyScienceInfrared spectroscopyPaleoenvironmentsBone and Bones03 medical and health sciencesPaleoanthropologyGeneticsAnimalsHumansPaleolimnologyDNA AncientPaleozoology030304 developmental biology0105 earth and related environmental sciencesEcology and Environmental SciencesBiology and Life SciencesProteinsPaleontologyDNAArchaeologyEarth sciencesAncient DNAAnthropologyPaleobiologyPaleogeneticsCollagensPloS one
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Toward sustainable environmental quality : Priority research questions for Europe

2018

P.J. Van den Brink et al.

Aquatic Ecology and Water Quality Management010504 meteorology & atmospheric sciences[SDV]Life Sciences [q-bio]Health Toxicology and Mutagenesis/dk/atira/pure/core/subjects/biology010501 environmental sciences01 natural sciencesEnvironmental Science(all)11. SustainabilityRegulation of chemicals/dk/atira/pure/core/subjects/healthmedia_common630 AgricultureKey questions exercise1. No poverty/dk/atira/pure/sustainabledevelopmentgoals/partnershipsBiodiversity/dk/atira/pure/core/subjects/earthsciQS EcologySustainable DevelopmentsustainabilityMiljövetenskapEnvironmental risk assessment/dk/atira/pure/sustainabledevelopmentgoals/decent_work_and_economic_growth3. Good health/dk/atira/pure/subjectarea/asjc/2300EuropeSustainabilityEnvironmental PollutantsProsperity/dk/atira/pure/core/subjects/envmanmedia_common.quotation_subjectControl (management)Chemical managementEnvironmentEcology and EnvironmentArticle12. Responsible consumptionSDG 17 - Partnerships for the GoalsHealth SciencesAgricultural Economics and Rural PolicyEnvironmental ChemistryHumansChemistry (relationship)Environmental planningBiologyEnvironmental quality0105 earth and related environmental sciencesSustainable development/dk/atira/pure/core/subjects/envsciWIMEKPovertyResearchAgrarische Economie en PlattelandsbeleidSDG 8 - Decent Work and Economic Growth500 ScienceAquatische Ecologie en WaterkwaliteitsbeheerQD ChemistryEnvironmental ManagementGlobal megatrends13. Climate actionSustainabilityEarth SciencesEnvironmental Sciences
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Olfactory attraction of the hornet Vespa velutina to honeybee colony odors and pheromones.

2014

19 pages; International audience; Since the beginning of the last century, the number of biological invasions has continuously increased worldwide. Due to their environmental and economical consequences, invasive species are now a major concern. Social wasps are particularly efficient invaders because of their distinctive biology and behavior. Among them, the yellow-legged hornet, Vespa velutina, is a keen hunter of domestic honeybees. Its recent introduction to Europe may induce important beekeeping, pollination, and biodiversity problems. Hornets use olfactory cues for the long-range detection of food sources, in this case the location of honeybee colonies, but the exact nature of these c…

Arthropodacondition contrôléeScienceWaspsInvasive SpeciesPlant Sciencelutte par piégeageBiochemistryPheromonesGeographical LocationsLarvaeSpecies Colonization[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisAnimalsvespa velutinaPollinationperception olfactivephéromoneabeille domestique[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyMetamorphosisEcologyPlant AnatomyQEcology and Environmental SciencesROrganismsBiology and Life SciencesBiodiversityBeesInvertebratesHymenopteraprédateurInsectsEuropeSmellPlant PhysiologyPredatory BehaviorPeople and PlacesOdorantsMedicinePolleninvasion biologique[SDE.BE]Environmental Sciences/Biodiversity and EcologyHoney BeesResearch ArticleDevelopmental Biology[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Validation of a novel automatic deposition of bacteria and yeasts on MALDI target for MALDI-TOF MS-based identification using MALDI Colonyst robot

2017

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) -based identification of bacteria and fungi significantly changed the diagnostic process in clinical microbiology. We describe here a novel technique for bacterial and yeast deposition on MALDI target using an automated workflow resulting in an increase of the microbes' score of MALDI identification. We also provide a comparison of four different sample preparation methods. In the first step of the study, 100 Gram-negative bacteria, 100 Gram-positive bacteria, 20 anaerobic bacteria and 20 yeasts were spotted on the MALDI target using manual deposition, semi-extraction, wet deposition onto 70% formic …

Atmospheric ScienceCarboxylic Acidslcsh:MedicineAnaerobic BacteriaResearch and Analysis MethodsMicrobiologyMass SpectrometryAnalytical ChemistryAutomationSpectrum Analysis TechniquesYeastsEnvironmental Chemistrylcsh:ScienceMatrix-Assisted Laser Desorption Ionization Time-of-Flight Mass SpectrometryGram Negative BacteriaBacteriaOrganic Compoundslcsh:REcology and Environmental SciencesGram Positive BacteriaFormic AcidOrganic ChemistryOrganismsFungiChemical CompoundsBiology and Life SciencesEukaryotaBacteriologyRoboticsYeastChemistryAtmospheric ChemistrySpectrometry Mass Matrix-Assisted Laser Desorption-IonizationPhysical SciencesEarth Scienceslcsh:QAcid DepositionAcidsResearch ArticlePLoS ONE
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Interaction of climate change with effects of conspecific and heterospecific density on reproduction

2020

We studied the relationship between temperature and the coexistence of great tit Parus major and blue tit Cyanistes caeruleus, breeding in 75 study plots across Europe and North Africa. We expected an advance in laying date and a reduction in clutch size during warmer springs as a general response to climate warming and a delay in laying date and a reduction in clutch size during warmer winters due to density-dependent effects. As expected, as spring temperature increases laying date advances and as winter temperature increases clutch size is reduced in both species. Density of great tit affected the relationship between winter temperature and laying date in great and blue tit. Specifically…

BREEDING SUCCESS0106 biological sciencesAvian clutch sizeclutch sizeQ101 natural sciencesDEPENDENCEParus majorsinitiainenPOPULATIONQL_671[SDV.EE]Life Sciences [q-bio]/Ecology environmenteducation.field_of_studyGEbiologyEcologyBlue tittiaisetCyanistesblue titPlan_S-Compliant_NOtalitiainenSpatial heterogeneityChemistrygreat titinternational1181 Ecology evolutionary biologylämpötilalaying dateCLUTCH-SIZEintraspecific competitionPopulationHABITAT HETEROGENEITYPARUS-MAJOR010603 evolutionary biologyEcology and EnvironmentIntraspecific competitiontemperature anomalymunintaQH301BLUECyanistes caeruleuseducationBiologyEcology Evolution Behavior and SystematicsInterspecioc competitionFICEDULAParusQLpesintälisääntymiskäyttäytyminenBIRDS010604 marine biology & hydrobiologyinterspecific competitionFicedulaInterspecific competitionilmastonmuutoksetbiology.organism_classification13. Climate actionGREAT TITS
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Variation in clutch size in relation to nest size in birds

2014

© 2014 The Authors. Nests are structures built to support and protect eggs and/or offspring from predators, parasites, and adverse weather conditions. Nests are mainly constructed prior to egg laying, meaning that parent birds must make decisions about nest site choice and nest building behavior before the start of egg-laying. Parent birds should be selected to choose nest sites and to build optimally sized nests, yet our current understanding of clutch size-nest size relationships is limited to small-scale studies performed over short time periods. Here, we quantified the relationship between clutch size and nest size, using an exhaustive database of 116 slope estimates based on 17,472 nes…

BREEDING SUCCESSAvian clutch sizeBiodiversité et EcologieSEXUAL SELECTIONPredationnatural holesNestTITS PARUS-MAJORBLUE TITSQL_671Original ResearchGEEcologyEcologyhole nestingSTURNUS-VULGARISFLYCATCHERS FICEDULAChemistryreaction normSexual selectioninternational1181 Ecology evolutionary biologyHole nestingHole nesting natural holes nest boxes reaction normnest boxeseducationta1172ZoologyBiologyIntraspecific competitionEcology and EnvironmentBiodiversity and EcologyClutchBiologyNest boxEcology Evolution Behavior and SystematicsNature and Landscape ConservationEkologi[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyInterspecific competitionPIED FLYCATCHERSPASSERINE BIRDSHole nesting;natural holes;nest boxes;reaction normSettore AGR/11 - Entomologia Generale E Applicatata1181[SDE.BE]Environmental Sciences/Biodiversity and EcologyGREAT TITSZoologyTHERMAL CONDITIONSEcology and Evolution
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Invasion Ability and Disease Dynamics of Environmentally Growing Opportunistic Pathogens under Outside-Host Competition

2014

Most theories of the evolution of virulence concentrate on obligatory host-pathogen relationship. Yet, many pathogens replicate in the environment outside-host where they compete with non-pathogenic forms. Thus, replication and competition in the outside-host environment may have profound influence on the evolution of virulence and disease dynamics. These environmentally growing opportunistic pathogens are also a logical step towards obligatory pathogenicity. Efficient treatment methods against these diseases, such as columnaris disease in fishes, are lacking because of their opportunist nature. We present a novel epidemiological model in which replication and competition in the outside-hos…

Bacterial Diseases0106 biological sciencesPopulation ModelingDisease01 natural sciencesTheoretical EcologyMedicine and Health SciencesPathogenPOPULATIONmedia_common0303 health scienceseducation.field_of_studyPREDATIONMultidisciplinaryEcologyTransmission (medicine)EcologySimulation and ModelingQRCHANNEL CATFISHEVOLUTIONARY DYNAMICSCOMMUNITYInfectious DiseasesHost-Pathogen Interactions1181 Ecology evolutionary biologyMedicineAlgorithmsResearch ArticleTRANSMISSIONSciencemedia_common.quotation_subjecteducationPopulationVirulenceOpportunistic InfectionsBiologyResearch and Analysis Methods010603 evolutionary biologyCompetition (biology)03 medical and health sciences14. Life underwaterParasite EvolutioneducationEvolutionary dynamicsta413030304 developmental biologyEvolutionary BiologyMathematical ModelingSTABILITYMORTALITYEcology and Environmental SciencesBiology and Life SciencesComputational BiologyFLAVOBACTERIUM-COLUMNAREOutbreakModels TheoreticalEmerging Infectious DiseasesEvolutionary Ecologyta1181VIRULENCEParasitologyInfectious Disease ModelingPLoS ONE
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Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development

2018

TheMycobacterium tuberculosiscomplex (MTBC) causes tuberculosis (TB) in humans and various other mammals. The human-adapted members of the MTBC comprise seven phylogenetic lineages that differ in their geographical distribution. There is growing evidence that this phylogenetic diversity modulates the outcome of TB infection and disease. For decades, TB research and development has focused on the two canonical MTBC reference strains H37Rv and Erdman, both of which belong to Lineage 4. Relying on only a few laboratory-adapted strains can be misleading as study results might not be directly transferrable to clinical settings where patients are infected with a diverse array of strains, includin…

Bacterial DiseasesResearch FacilitiesExtensively Drug-Resistant TuberculosisLineage (evolution)DiseaseAnimal PhylogeneticsMedicine and Health SciencesPhylogenyData Management0303 health sciencesGeographyPhylogenetic treeStrain (biology)QRGenomics3. Good healthActinobacteriaPhylogeneticsPhylogeographyInfectious DiseasesBiogeographyMycobacterium tuberculosis complexMedicineResearch LaboratoriesResearch ArticleComputer and Information SciencesTuberculosisTuberculosiScienceBiologyResearch and Analysis MethodsMycobacterium tuberculosis03 medical and health sciencesGenomic MedicineGeneticsmedicineTuberculosisHumansEvolutionary SystematicsTaxonomy030304 developmental biologyEvolutionary BiologyPopulation BiologyBacteria030306 microbiologyEcology and Environmental SciencesOrganismsBiology and Life SciencesGenetic VariationMycobacterium tuberculosisTropical Diseasesbiology.organism_classificationmedicine.diseaseGenòmicaPhylogenetic diversityEvolutionary biologyEarth SciencesZoologyPopulation Genetics
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