Search results for "Efficient"
showing 10 items of 1603 documents
QSPR prediction of chromatographic retention times of pesticides: Partition and fractal indices
2014
The high-performance liquid-chromatographic retentions of red-wine pesticide residues are modeled by structure-property relationships. The effect of different types of features is analyzed: geometric, lipophilic, etc. The properties are fractal dimensions, partition coefficient, etc., in linear and nonlinear correlation models. Biological plastic evolution is an evolutionary perspective conjugating the effect of acquired characters and relations that emerge among the principles of evolutionary indeterminacy, morphological determination and natural selection. It is applied to design the co-ordination index that is used to characterize pesticide retentions. The parameters used to calculate th…
Protein linear indices of the ‘macromolecular pseudograph α-carbon atom adjacency matrix’ in bioinformatics. Part 1: Prediction of protein stability …
2005
Abstract A novel approach to bio-macromolecular design from a linear algebra point of view is introduced. A protein’s total (whole protein) and local (one or more amino acid) linear indices are a new set of bio-macromolecular descriptors of relevance to protein QSAR/QSPR studies. These amino-acid level biochemical descriptors are based on the calculation of linear maps on R n [ f k ( x m i ) : R n → R n ] in canonical basis. These bio-macromolecular indices are calculated from the kth power of the macromolecular pseudograph α-carbon atom adjacency matrix. Total linear indices are linear functional on R n . That is, the kth total linear indices are linear maps from R n to the scalar R [ f k …
Multi-target QSPR assemble of a Complex Network for the distribution of chemicals to biphasic systems and biological tissues
2008
Abstract Chemometrics, that based prediction on the probability of chemical distribution to different systems, is highly important for physicochemical, environmental, and life sciences. However, the amount of information is huge and difficult to analyze. A multi-system partition Complex Network (MSP-CN) may be very useful in this sense. We define MSP-CNs as large graphs composed by nodes (chemicals) interconnected by arcs if a pair of chemicals have similar partition in a given system. Experimental quantification of partition in many systems is expensive, so we can use a Quantitative Structure–Partition Relationship (QSPR) model. Unfortunately, with classic QSPR we need to use one model for…
Unified Markov thermodynamics based on stochastic forms to classify drugs considering molecular structure, partition system, and biological species:
2005
Abstract To date, molecular descriptors do not commonly account for important information beyond chemical structure. The present work, attempts to extend, in this sense, the stochastic molecular descriptors (Gonzalez-Diaz, H. et al., J. Mol. Mod. 2002, 8, 237), incorporating information about the specific biphasic partition system, the biological species, and chemical structure inside the molecular descriptors. Consequently, MARCH-INSIDE molecular descriptors may be identified with time-dependent thermodynamic parameters (entropy and mean free energy) of partition process. A classification function was developed to classify data of 423 drugs and up to 14 different partition systems at the s…
Modeling the chiral resolution ability of highly sulfated β-cyclodextrin for basic compounds in electrokinetic chromatography
2013
Abstract Despite the fact that extensive research in the field of enantioseparations by capillary electrophoresis has been carried out, it is difficult to predict whether a concrete chiral selector would be useful for the separation of a racemic compound. Hence, several experimental effort is necessary to test the abilities of individual chiral selectors, usually by trial and error procedures. Thus, the enantioseparation of a new racemate becomes a time- and money-consuming task. In this work, the ability of highly sulfated β-cyclodextrin (HS-β-CD) as chiral selector in electrokinetic chromatography (EKC) is modeled for the first time, using exclusively directly-available structural data of…
Atom-Based 2D Quadratic Indices in Drug Discovery of Novel Tyrosinase Inhibitors: Results ofIn Silico Studies Supported by Experimental Results
2007
Herein we present results of QSAR studies of tyrosinase inhibitors employing one of the atom-based TOMOCOMD-CARDD (acronym of TOpological MOlecular COMputer Design-Computer Aided “Rational” Drug Design) descriptors, molecular quadratic indices, and Linear Discriminant Analysis (LDA) as pattern recognition method. In this way, a database of 246 organic chemicals, reported as tyrosinase inhibitors having great structural variability, was analyzed and presented as a helpful tool, not only for theoretical chemists but also for other researchers in this area. In total, 12 LDA-based QSAR models were obtained, the first six with the non-stochastic total and local quadratic indices and the six rema…
The errant life of a heavy quark in the quark–gluon plasma
2011
In the high-temperature phase of QCD, the heavy-quark momentum diffusion constant determines, via a fluctuation–dissipation relation, how fast a heavy quark kinetically equilibrates. This transport coefficient can be extracted from thermal correlators via a Kubo formula. We present a lattice calculation of the relevant Euclidean correlators in the gluon plasma, based on a recent formulation of the problem in heavy-quark effective field theory (HQET). We find a ≈20% enhancement of the Euclidean correlator at maximal time separation as the temperature is lowered from 6Tc to 2Tc, pointing to stronger interactions at lower temperatures. At the same time, the correlator becomes flatter from 6Tc …
Design, build-up and optimization of a fast quenching device for polymeric thin film
2014
In this work an innovative apparatus for the characterization of polymer solidification under very high cooling rates (up to thousand of K/s) is described, according to the continuous cooling transformation approach adopted in metallurgy for studying structure development in metals. The proposed model experiment is addressed to design a method for the characterization of non-isothermal solidification behaviour, encompassing typical cooling conditions of polymer processing. Only temperature history determines the structure formed, as melt solidification takes place in quiescent conditions. With respect to the device previously developed by the authors [1, 3] the present equipment presents th…
Analyzing assessors and products in sorting tasks: DISTATIS, theory and applications
2007
Abstract In this paper we present a new method called distatis that can be applied to the analysis of sorting data. D istatis is a generalization of classical multidimensional scaling which allows one to analyze 3-ways distance tables. When used for analyzing sorting tasks, distatis takes into account individual sorting data. Specifically, when distatis is used to analyze the results of an experiment in which several assessors sort a set of products, we obtain two types of maps: One for the assessors and one for the products. In these maps, the proximity between two points reflects their similarity, and therefore these maps can be read using the same rules as standard metric multidimensiona…
DISTATIS: The Analysis of Multiple Distance Matrices
2006
In this paper we present a generalization of classical multidimensional scaling called DISTATIS which is a new method that can be used to compare algorithms when their outputs consist of distance matrices computed on the same set of objects. The method first evaluates the similarity between algorithms using a coefficient called the RV coefficient. From this analysis, a compromise matrix is computed which represents the best aggregate of the original matrices. In order to evaluate the differences between algorithms, the original distance matrices are then projected onto the compromise. We illustrate this method with a "toy example" in which four different "algorithms" (two computer programs …