Search results for "FOS"

showing 10 items of 15075 documents

Calculation of the Phase Behavior of Lipids

1998

The self-assembly of monoacyl lipids in solution is studied employing a model in which the lipid's hydrocarbon tail is described within the Rotational Isomeric State framework and is attached to a simple hydrophilic head. Mean-field theory is employed, and the necessary partition function of a single lipid is obtained via a partial enumeration over a large sample of molecular conformations. The influence of the lipid architecture on the transition between the lamellar and inverted-hexagonal phases is calculated, and qualitative agreement with experiment is found.

chemistry.chemical_classificationPartition function (quantum field theory)Quantitative Biology::BiomoleculesStatistical Mechanics (cond-mat.stat-mech)010304 chemical physicsChemistryFOS: Physical sciencesThermodynamics02 engineering and technology021001 nanoscience & nanotechnology01 natural sciencesMolecular conformationLarge sampleQuantitative Biology::Subcellular ProcessesCondensed Matter::Soft Condensed MatterHydrocarbonPhase (matter)0103 physical sciencesLamellar structurelipids (amino acids peptides and proteins)Lipid bilayer phase behavior0210 nano-technologyCondensed Matter - Statistical Mechanics
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Mapping onto ideal chains overestimates self-entanglements in polymer melts

2017

In polymer physics it is typically assumed that excluded volume interactions are effectively screened in polymer melts. Hence, chains could be described by an effective random walk without excluded volume interactions. In this letter, we show that this mapping is problematic by analyzing the occurrence of knots, their spectrum and sizes in polymer melts, corresponding random walks and chains in dilute solution. The effective random walk severely overrates the occurrence of knots and their complexity, particularly when compared to melts of flexible chains, indicating that non-trivial effects due to remnants of self-avoidance still play a significant role for the chain lengths considered in t…

chemistry.chemical_classificationPersistence lengthMaterials sciencePolymers and PlasticsOrganic ChemistrySegment lengthFOS: Physical sciences02 engineering and technologyPolymerCondensed Matter - Soft Condensed Matter021001 nanoscience & nanotechnologyRandom walk01 natural sciencesInorganic ChemistryCondensed Matter::Soft Condensed Mattersurgical procedures operativeKnot (unit)stomatognathic systemchemistryChemical physics0103 physical sciencesMaterials ChemistrySoft Condensed Matter (cond-mat.soft)010306 general physics0210 nano-technology
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One- and two-component bottle-brush polymers: simulations compared to theoretical predictions

2007

Scaling predictions and results from self-consistent field calculations for bottle-brush polymers with a rigid backbone and flexible side chains under good solvent conditions are summarized and their validity and applicability is assessed by a comparison with Monte Carlo simulations of a simple lattice model. It is shown that under typical conditions, as they are also present in experiments, only a rather weak stretching of the side chains is realized, and then the scaling predictions based on the extension of the Daoud-Cotton blob picture are not applicable. Also two-component bottle brush polymers are considered, where two types (A,B) of side chains are grafted, assuming that monomers of …

chemistry.chemical_classificationPhase transitionQuantitative Biology::BiomoleculesPolymers and PlasticsChemistryOrganic ChemistryMonte Carlo methodFOS: Physical sciencesThermodynamicsPolymerCondensed Matter - Soft Condensed MatterCondensed Matter PhysicsPolymer brushInorganic ChemistryCondensed Matter::Soft Condensed MatterMaterials ChemistrySide chainRadius of gyrationSoft Condensed Matter (cond-mat.soft)Statistical physicsScalingLattice model (physics)
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Long Range Bond-Bond Correlations in Dense Polymer Solutions

2004

The scaling of the bond-bond correlation function $C(s)$ along linear polymer chains is investigated with respect to the curvilinear distance, $s$, along the flexible chain and the monomer density, $\rho$, via Monte Carlo and molecular dynamics simulations. % Surprisingly, the correlations in dense three dimensional solutions are found to decay with a power law $C(s) \sim s^{-\omega}$ with $\omega=3/2$ and the exponential behavior commonly assumed is clearly ruled out for long chains. % In semidilute solutions, the density dependent scaling of $C(s) \approx g^{-\omega_0} (s/g)^{-\omega}$ with $\omega_0=2-2\nu=0.824$ ($\nu=0.588$ being Flory's exponent) is set by the number of monomers $g(\r…

chemistry.chemical_classificationPhysicsLinear polymerGeneral Physics and AstronomyFOS: Physical sciences02 engineering and technologyPolymerCondensed Matter - Soft Condensed Matter010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesPower lawOmega0104 chemical sciencesChemical bondchemistryDensity dependentExponentSoft Condensed Matter (cond-mat.soft)Statistical physicsAtomic physics0210 nano-technologyScaling[PHYS.COND.CM-SCM]Physics [physics]/Condensed Matter [cond-mat]/Soft Condensed Matter [cond-mat.soft]61.25.Hq 05.10.Ln 05.40.Fb
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Third virial coefficient for 4-arm and 6-arm star polymers

2008

We discuss the computation of the third virial coefficient in polymer systems, focusing on an additional contribution absent in the case of monoatomic fluids. We determine the interpenetration ratio and several quantities that involve the third virial coefficient for star polymers with 4 and 6 arms in the good-solvent regime, in the limit of a large degree of polymerization.

chemistry.chemical_classificationPhysicsMonatomic gasStatistical Mechanics (cond-mat.stat-mech)Polymers and PlasticsOrganic ChemistryMonte Carlo methodFOS: Physical sciencesThermodynamicsPolymerStatistical mechanicsDegree of polymerizationCondensed Matter - Soft Condensed MatterCondensed Matter Physicsmonte carlo simulations; star polymers; statistical mechanics; statistical thermodynamics; virial expansionInorganic ChemistrychemistryVirial coefficientMaterials ChemistryVirial expansionSoft Condensed Matter (cond-mat.soft)Limit (mathematics)Condensed Matter - Statistical Mechanics
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Polymer dynamics in time-dependent periodic potentials.

2008

Dynamics of a discrete polymer in time-dependent external potentials is studied with the master equation approach. We consider both stochastic and deterministic switching mechanisms for the potential states and give the essential equations for computing the stationary state properties of molecules with internal structure in time-dependent periodic potentials on a lattice. As an example, we consider standard and modified Rubinstein-Duke polymers and calculate their mean drift and effective diffusion coefficient in the two-state non-symmetric flashing potential and symmetric traveling potential. Rich non-linear behavior of these observables is found. By varying the polymer length, we find cur…

chemistry.chemical_classificationPhysicsStatistical Mechanics (cond-mat.stat-mech)Equations of stateFOS: Physical sciencesObservablemolekyylitPolymerFlashingNonlinear systemClassical mechanicschemistryLattice (order)Master equationMoleculepolymeeritCondensed Matter - Statistical MechanicsdynamiikkaPhysical review. E, Statistical, nonlinear, and soft matter physics
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Scaling behavior of topologically constrained polymer rings in a melt

2014

Large scale molecular dynamics simulations on graphic processing units (GPUs) are employed to study the scaling behavior of ring polymers with various topological constraints in melts. Typical sizes of rings containing $3_1$, $5_1$ knots and catenanes made up of two unknotted rings scale like $N^{1/3}$ in the limit of large ring sizes $N$. This is consistent with the crumpled globule model and similar findings for unknotted rings. For small ring lengths knots occupy a significant fraction of the ring. The scaling of typical ring sizes for small $N$ thus depends on the particular knot type and the exponent is generally larger than 0.4.

chemistry.chemical_classificationPhysicsStatistical Mechanics (cond-mat.stat-mech)Mathematics::Commutative AlgebraCatenaneFOS: Physical sciencesGeometryPolymerCondensed Matter - Soft Condensed MatterCondensed Matter PhysicsMathematics::Geometric TopologyMolecular dynamicsKnot (unit)chemistryExponentSoft Condensed Matter (cond-mat.soft)General Materials ScienceScalingCondensed Matter - Statistical MechanicsJournal of Physics: Condensed Matter
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The Effect of Phosphinothricin (Glufosinate) on Glutathione Synthesis in Plants

1990

The inhibitory effect of DL-phosphinothricin (glufosinate) on glutathione synthesis was studied in vivo and in vitro. The influence of phosphinothricin on γ-glutamylcysteine synthetase was compared with the already known effects of l-buthionine sulfoximine and l-methionine sulfoximine. The results showed that phosphinothricin and buthionine sulfoximine are inhibitors of γ-glutamylcysteine synthetase of plants. With both substances the enzyme was inhibited by 50 % at a concentration of 7 . 10−4M (pI50 = 3.15). Methionine sulfoximine reduced the enzyme activity by 50% at 5 . 10−2 M (pI50 = 1.30). It is discussed that the target enzyme of phosphinothricin is the glutamine synthetase whereas th…

chemistry.chemical_classificationPlant ScienceMetabolismGlutathioneBiologyEnzyme assaychemistry.chemical_compoundEnzymechemistryBiosynthesisBiochemistryGlufosinateGlutamine synthetasebiology.proteinButhionine sulfoximineBotanica Acta
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Stimuli-responsive brushes with active minority components: Monte Carlo study and analytical theory

2015

Using a combination of analytical theory, Monte Carlo simulations, and three dimensional self-consistent field calculations, we study the equilibrium properties and the switching behavior of adsorption-active polymer chains included in a homopolymer brush. The switching transition is driven by a conformational change of a small fraction of minority chains, which are attracted by the substrate. Depending on the strength of the attractive interaction, the minority chains assume one of two states: An exposed state characterized by a stem-crown-like conformation, and an adsorbed state characterized by a flat two-dimensional structure. Comparing the Monte Carlo simulations, which use an Edwards-…

chemistry.chemical_classificationPolymers and PlasticsChemistryOrganic ChemistryMonte Carlo methodBrushFOS: Physical sciencesPolymerFlory–Huggins solution theoryCondensed Matter - Soft Condensed Matterlaw.inventionCondensed Matter::Soft Condensed MatterInorganic Chemistrysymbols.namesakelawThermalExcluded volumeMaterials ChemistrysymbolsDynamic Monte Carlo methodSoft Condensed Matter (cond-mat.soft)Statistical physicsHamiltonian (quantum mechanics)
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Energy-stable linear schemes for polymer-solvent phase field models

2017

We present new linear energy-stable numerical schemes for numerical simulation of complex polymer-solvent mixtures. The mathematical model proposed by Zhou, Zhang and E (Physical Review E 73, 2006) consists of the Cahn-Hilliard equation which describes dynamics of the interface that separates polymer and solvent and the Oldroyd-B equations for the hydrodynamics of polymeric mixtures. The model is thermodynamically consistent and dissipates free energy. Our main goal in this paper is to derive numerical schemes for the polymer-solvent mixture model that are energy dissipative and efficient in time. To this end we will propose several problem-suited time discretizations yielding linear scheme…

chemistry.chemical_classificationQuantitative Biology::BiomoleculesComputer simulationPhase field modelsNumerical Analysis (math.NA)010103 numerical & computational mathematicsPolymerMixture model01 natural sciences010101 applied mathematicsSolventCondensed Matter::Soft Condensed MatterComputational MathematicsComputational Theory and MathematicschemistryModeling and SimulationFOS: MathematicsDissipative systemStatistical physicsMathematics - Numerical Analysis0101 mathematicsEnergy (signal processing)Mathematics
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