Search results for "FUNCTIONAL"

showing 10 items of 4822 documents

The chemistry of acetone at extreme conditions by density functional molecular dynamics simulations

2011

Density functional molecular dynamics simulations have been performed in the NVT ensemble (moles (N), volume (V) and temperature (T)) on a system formed by ten acetone molecules at a temperature of 2000 K and density ρ = 1.322 g cm(-3). These conditions resemble closely those realized at the interface of an acetone vapor bubble in the early stages of supercompression experiments and result in an average pressure of 5 GPa. Two relevant reactive events occur during the simulation: the condensation of two acetone molecules to give hexane-2,5-dione and dihydrogen and the isomerization to the enolic propen-2-ol form. The mechanisms of these events are discussed in detail.

DFT molecular dynamicsCondensationTemperatureacetoneGeneral Physics and AstronomyThermodynamicsMolecular Dynamics SimulationMolecular dynamicschemistry.chemical_compoundchemistryVolume (thermodynamics)extreme conditionPressureAcetoneQuantum TheoryPhysical chemistryVapor bubbleMoleculeDensity functional theoryPhysical and Theoretical ChemistryIsomerizationThe Journal of Chemical Physics
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Cloning and tissue expression of two cDNAs encoding the peroxisomal 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase in the guinea pig liver

1996

Abstract The 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (HD) is the second enzyme of the peroxisomal β-oxidation pathway. In human and rat, only one HD mRNA has been so far detected in the liver. This paper reports for the first time in a mammal species, the guinea pig, the cloning and sequencing of two cDNAs encoding an HD. The 3,274 nucleotide-cDNA is a strictly identical but longer copy of the 2,494 nucleotide-form. A 2,178 by-open reading frame encodes a protein of 726 amino acids ( M r 79.3 kDa) with the peroxisomal-targeting signal (tripeptide SKL) at the carboxyterminus. Northern blot analysis of HD mRNA identified three mRNAs of respective sizes 3.5, 2.6 and 1.6 kb in the…

DNA ComplementaryGuinea PigsMolecular Sequence DataBiophysicsGene ExpressionDehydrogenasePeroxisomeBiologyKidneyMicrobodiesBiochemistryStructural BiologyComplementary DNAGeneticsAnimalsPhosphofructokinase 2Amino Acid SequenceRNA MessengerNorthern blotCloning Molecular2-Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenaseBifunctional enzymeEnoyl-CoA HydrataseMolecular BiologyCloningBase Sequence3-Hydroxyacyl CoA DehydrogenasesSequence Analysis DNACell BiologyPeroxisomeEnoyl-CoA hydrataseBlotting NorthernGuinea pigMolecular biology3-Hydroxyacyl-CoA DehydrogenaseLiverBiochemistrycDNAFEBS Letters
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Computational annotation of genes differentially expressed along olive fruit development

2009

Abstract Background Olea europaea L. is a traditional tree crop of the Mediterranean basin with a worldwide economical high impact. Differently from other fruit tree species, little is known about the physiological and molecular basis of the olive fruit development and a few sequences of genes and gene products are available for olive in public databases. This study deals with the identification of large sets of differentially expressed genes in developing olive fruits and the subsequent computational annotation by means of different software. Results mRNA from fruits of the cv. Leccino sampled at three different stages [i.e., initial fruit set (stage 1), completed pit hardening (stage 2) a…

DNA PlantBERRY DEVELOPMENTGenomicsComputational biologyPlant ScienceBiologyGenes PlantGenomeGene Expression Regulation PlantOlealcsh:BotanyBotanyCluster AnalysisFUNCTIONAL GENOMICSGene Regulatory NetworksKEGGBlast2GOGene LibraryExpressed sequence tagGene Expression ProfilingComputational BiologySequence Analysis DNAGRAPE BERRIESREDUCTASE GENEEST DATABASEOLEA-EUROPAEAlcsh:QK1-989Gene expression profilingOLEA-EUROPAEA; SEQUENCE TAGS; TRANSIENT EXPRESSION; FUNCTIONAL GENOMICS; BERRY DEVELOPMENT; POTENTIAL ROLES; DESATURASE GENE; REDUCTASE GENE; GRAPE BERRIES; EST DATABASESuppression subtractive hybridizationFruitPOTENTIAL ROLESDESATURASE GENETRANSIENT EXPRESSIONFunctional genomicsMetabolic Networks and PathwaysSEQUENCE TAGSResearch ArticleBMC Plant Biology
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Exploring Frequency-Dependent Brain Networks from Ongoing EEG Using Spatial ICA During Music Listening

2020

Recently, exploring brain activity based on functional networks during naturalistic stimuli especially music and video represents an attractive challenge because of the low signal-to-noise ratio in collected brain data. Although most efforts focusing on exploring the listening brain have been made through functional magnetic resonance imaging (fMRI), sensor-level electro- or magnetoencephalography (EEG/MEG) technique, little is known about how neural rhythms are involved in the brain network activity under naturalistic stimuli. This study exploited cortical oscillations through analysis of ongoing EEG and musical feature during freely listening to music. We used a data-driven method that co…

DYNAMICS6162 Cognitive scienceBrain activity and meditationComputer scienceSpeech recognitionIndependent components analysisElectroencephalographyACTIVATIONSuperior temporal gyrus0302 clinical medicineMusic information retrievalaivotutkimusEEGindependent components analysisBrain MappingRadiological and Ultrasound Technologymedicine.diagnostic_test05 social sciencesBrainElectroencephalographyhumanitiesEMOTIONSNeurologyFeature (computer vision)Auditory PerceptionALPHA-BANDFrequency-specific networks; Music information retrieval; EEG; Independent components analysisfrequency-specific networksAnatomyaivotTOOLBOX515 PsychologyMusic information retrievalmusic information retrievalmusiikkibehavioral disciplines and activitieskuunteleminen050105 experimental psychologyTIMBRE03 medical and health sciencesOSCILLATIONSmedicineHumans0501 psychology and cognitive sciencesRadiology Nuclear Medicine and imagingPERCEPTIONOriginal PaperATTENTIONtaajuusMagnetoencephalographyaivokuoriFrequency-specific networksNeurology (clinical)Functional magnetic resonance imaginghuman activitiesTimbreMusic030217 neurology & neurosurgeryRESPONSESBrain Topography
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Adsorption dynamics of molecular nitrogen at an Fe(111) surface.

2017

We present an extensive theoretical study of N adsorption mechanisms on an Fe(111) surface. We combine the static analysis of a six-dimensional potential energy surface (6D-PES), based on ab initio density functional theory (DFT) calculations for the system, with quasi-classical trajectory (QCT) calculations to simulate the adsorption dynamics. There are four molecular adsorption states, usually called γ, δ, α, and ε, arising from our DFT calculations. We find that N adsorption in the γ-state is non-activated, while the threshold energy is associated with the entrance channel for the other three adsorption states. Our QCT calculations confirm that there are activated and nonactivated paths …

DYNAMICSADSORPTIONCiencias FísicasAb initioGeneral Physics and AstronomyThermodynamics02 engineering and technologyTrapping01 natural sciencesMolecular dynamicsAdsorption0103 physical sciencesN2/Fe(111)Physical and Theoretical Chemistry010306 general physicsComputingMilieux_MISCELLANEOUS[PHYS]Physics [physics]Range (particle radiation)ChemistrySURFACES021001 nanoscience & nanotechnologyThreshold energyAstronomíaPotential energy surfaceDensity functional theoryAtomic physics0210 nano-technologyCIENCIAS NATURALES Y EXACTASPhysical chemistry chemical physics : PCCP
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Integrating Decomposers, Methane-Cycling Microbes and Ecosystem Carbon Fluxes Along a Peatland Successional Gradient in a Land Uplift Region

2021

AbstractPeatlands are carbon dioxide (CO2) sinks that, in parallel, release methane (CH4). The peatland carbon (C) balance depends on the interplay of decomposer and CH4-cycling microbes, vegetation, and environmental conditions. These interactions are susceptible to the changes that occur along a successional gradient from vascular plant-dominated systems to Sphagnum moss-dominated systems. Changes similar to this succession are predicted to occur from climate change. Here, we investigated how microbial and plant communities are interlinked with each other and with ecosystem C cycling along a successional gradient on a boreal land uplift coast. The gradient ranged from shoreline to meadows…

DYNAMICSPeatecosystem respirationmethane emissionSphagnumCOMMUNITY COMPOSITIONDecomposerCO2 EXCHANGEbakteeritmethanotrophsmethanogensturvemaatBogFUNGALBiomass (ecology)geography.geographical_feature_categoryEcologybiologyEcologyFUNCTIONAL TYPEShiilen kiertofood and beveragesactinobacteriaFEN ECOSYSTEMprimary paludification1181 Ecology evolutionary biologymicrobial communityEcosystem respirationsienetWATER-LEVEL DRAWDOWNTERMmetaaniEnvironmental ChemistryEcosystembiomassa (ekologia)PLANT-COMMUNITIESVEGETATION SUCCESSION1172 Environmental sciencesEcology Evolution Behavior and Systematicsgeographymicrobial biomassbiology.organism_classificationpeatland developmentmaankohoaminenmikrobistoMicrobial population biologyACTINOBACTERIAL COMMUNITIEShiilinielutEnvironmental sciencefungipeatland development.Ecosystems
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Modulation of Irisin and Physical Activity on Executive Functions in Obesity and Morbid obesity

2016

Whether the executive profile is different between obesity (OB) and morbid obesity (MO) remains unclear. Recent evidence suggests that physical activity (PA) can act as a cognitive enhancer. Irisin is a recently discovered hormone associated with some of the positive effects of PA. The objective of the study was to investigate the executive profile in OB and MO, and to explore the role of PA and irisin. 114 participants were included (21 OB, 44 MO and 49 healthy controls-HC) in the study and assessed with the Wisconsin Card Sorting Test, Stroop Color and Word Test, and Iowa Gambling Task. All participants were female, aged between 18 and 60 years. Results showed a similar dysfunctional prof…

DecisionObesitat mòrbida -- TractamentMorbid obesity0302 clinical medicineWisconsin Card Sorting TestObesity -- TreatmentMorbid obesity -- TreatmentMultidisciplinaryNeuropsychologyExercici -- Aspectes fisiològicsCognitionMiddle AgedExecutive functionsObesity MorbidObesitat -- TractamentCognitive controlObesitatFemaleClinical psychologyAdultIrisinmedicine.medical_specialtyAdolescentDecision MakingObesitat mòrbidaDysfunctional profile030209 endocrinology & metabolismDysfunctional familyPredictive markersArticle03 medical and health sciencesInternal medicinemedicineHumansObesityExercisePhysical activitybusiness.industryPhysical fitnessmedicine.diseaseObesityIowa gambling taskHormonesFibronectinsEndocrinologybusinessDecision making030217 neurology & neurosurgeryStroop effectCondició físicaScientific Reports
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Multi-integrals of finite variation

2020

The aim of this paper is to investigate different types of multi-integrals of finite variation and to obtain decomposition results.

Decomposition of multifunctionsFinite variation54C60General Mathematics010102 general mathematics54C6501 natural sciencesFunctional Analysis (math.FA)28B20 26E25 26A39 28B05 46G10 54C60 54C65Mathematics - Functional Analysis28B0526A3926E25Settore MAT/05 - Analisi MatematicaFinite interval variationFOS: MathematicsDecomposition (computer science)Applied mathematicsMathematics - Functional Analysis; Mathematics - Functional Analysis; 28B20 26E25 26A39 28B05 46G10 54C60 54C6528B200101 mathematicsMultivalued integralMathematics46G10
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Neuroimaging and electrophysiology meet invasive neurostimulation for causal interrogations and modulations of brain states.

2020

Deep brain stimulation (DBS) has developed over the last twenty years into a highly effective evidenced-based treatment option for neuropsychiatric disorders. Moreover, it has become a fascinating tool to provide illustrative insights into the functioning of brain networks. New anatomical and pathophysiological models of DBS action have accelerated our understanding of neurological and psychiatric disorders and brain functioning. The description of the brain networks arose through the unique ability to illustrate long-range interactions between interconnected brain regions as derived from state-of-the-art neuroimaging (structural, diffusion, and functional MRI) and the opportunity to record…

Deep brain stimulationBrain networksComputer scienceCognitive Neurosciencemedicine.medical_treatmentDeep Brain StimulationMicroelectrode recordingNeuroimagingLocal field potentialElectroencephalography050105 experimental psychologyDiffusion MRIlcsh:RC321-57103 medical and health sciences0302 clinical medicineNeuroimagingmedicineHumans0501 psychology and cognitive scienceslcsh:Neurosciences. Biological psychiatry. NeuropsychiatryNeurostimulationFunctional MRImedicine.diagnostic_test05 social sciencesBrainMagnetoencephalographyElectroencephalographyMagnetoencephalographyMagnetic Resonance ImagingPathophysiologyNeuromodulation (medicine)Structural MRIMicroelectrodeElectrophysiologyNeurologyNeuroscience030217 neurology & neurosurgeryDiffusion MRINeuroImage
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Dipolar coupling of nanoparticle-molecule assemblies: An efficient approach for studying strong coupling

2021

Strong light-matter interactions facilitate not only emerging applications in quantum and non-linear optics but also modifications of materials properties. In particular the latter possibility has spurred the development of advanced theoretical techniques that can accurately capture both quantum optical and quantum chemical degrees of freedom. These methods are, however, computationally very demanding, which limits their application range. Here, we demonstrate that the optical spectra of nanoparticle-molecule assemblies, including strong coupling effects, can be predicted with good accuracy using a subsystem approach, in which the response functions of the different units are coupled only a…

Degrees of freedom (statistics)General Physics and AstronomyNanoparticleFOS: Physical sciences010402 general chemistryoptiset ominaisuudet01 natural scienceslinear combination of atomic orbitalstime dependent density functional theorynanorakenteet0103 physical sciencesMesoscale and Nanoscale Physics (cond-mat.mes-hall)MoleculePhysical and Theoretical Chemistryoptical spectroscopyQuantumPhysicssurface optics010304 chemical physicsCondensed Matter - Mesoscale and Nanoscale Physicstiheysfunktionaaliteoriapolarizability0104 chemical sciencesplasmonitRange (mathematics)DipoleChemical physicsDensity functional theorynanoparticlesnanohiukkasetplasmonsMagnetic dipole–dipole interaction
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