Search results for "Flash photolysis"

showing 10 items of 34 documents

Ethane-Bridged Zinc-Porphyrin Dimers in Langmuir-Shäfer Thin Films: Structural and Spectroscopic Properties

2006

This work reports on the structural and spectroscopic properties of ethane-bridged Zn porphyrin dimers (1) in Langmuir-Scha¨fer (LS) thin films by combining scanning force microscopy (SFM) with film balance, UV-vis absorption, fluorescence, and nanosecond laser flash photolysis measurements. Results show that depending on the surface pressure the Langmuir films of pure 1 can be arranged in two different condensed phases, whereas SFM of the LS films shows characteristic fractal networks constituted by nanoscopic aggregates. The spectral findings agree with a picture in which 1 is apparently present in the anti conformation but aggregated in a sort of H-type structure whose optical features r…

LangmuirPorphyrinsLangmuir-Schaefer filmPhotochemistryporphyrin dimerPorphyrinSurfaces Coatings and Filmscircular dichroismchemistry.chemical_compoundCrystallographychemistryUltrafast laser spectroscopyMaterials ChemistryArachidic acidFlash photolysisPhysical and Theoretical ChemistryAbsorption (chemistry)Thin filmChiralityUV-vis absorptionConformational isomerismfluorescence and nanosecond laser flash photolysis measurements
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Light-Induced Protein-Matrix Uncoupling and Protein Relaxation in Dry Samples of Trehalose-Coated MbCO at Room Temperature

2005

In humid samples of trehalose-coated carboxy-myoglobin (MbCO), thermally driven conformational relaxation takes place after photodissociation of the carbon monoxide (CO) molecule at room temperature. In such samples, because of the extreme viscosity of the external matrix, photodissociated CO cannot diffuse out of the protein and explores the whole (proximal and distal side) heme pocket, experiencing averaged protein heme pocket structures, as a result of the presence of Brownian motions. At variance, in very dry samples, a lower portion of the photodissociated CO diffuses from the distal to the proximal heme pocket side probing in nonaveraged structures. We revisit here the flash photolysi…

LightProtein ConformationBiophysicsBiochemistrychemistry.chemical_compoundProtein structureAnimalsHumansHemePhotolysisMyoglobinHydrogen bondLasersPhotodissociationRelaxation (NMR)TrehaloseHydrogen BondingCell BiologyGeneral MedicineProtein Structure TertiaryCrystallographychemistryMyoglobinFlash photolysisProtein BindingCarbon monoxideCell Biochemistry and Biophysics
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Helium gas pressure cell for pressures up to 1 kbar (0.1 GPa) in conjunction with the cold head of a closed-cycle He refrigerator

1997

A helium gas pressure cell for pressures up to 1 kbar (0.1 GPa) has been developed in conjunction with a closed-cycle He refrigerator allowing variable temperatures between 15 and 300 K. Both cell and refrigerator are equipped with optical windows suitable for photophysical measurements, such as temperature- and pressure-dependent absorption spectroscopy or laser flash photolysis. Examples of measurements on iron(II) spin-crossover systems are given. In these compounds, comparatively small external pressures induce significant changes in the thermodynamic equilibrium as well as in the relaxation dynamics.

Materials scienceAbsorption spectroscopyThermodynamic equilibriumApplied MathematicsConjunction (astronomy)Refrigerator carThermodynamicsLaserlaw.inventionlawddc:540Head (vessel)Relaxation (physics)Flash photolysisInstrumentationEngineering (miscellaneous)
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Internal dynamics and protein-matrix coupling in trehalose-coated proteins.

2005

Abstract We review recent studies on the role played by non-liquid, water-containing matrices on the dynamics and structure of embedded proteins. Two proteins were studied, in water–trehalose matrices: a water-soluble protein (carboxy derivative of horse heart myoglobin) and a membrane protein (reaction centre from Rhodobacter sphaeroides ). Several experimental techniques were used: Mossbauer spectroscopy, elastic neutron scattering, FTIR spectroscopy, CO recombination after flash photolysis in carboxy-myoglobin, kinetic optical absorption spectroscopy following pulsed and continuous photoexcitation in Q B containing or Q B deprived reaction centre from R. sphaeroides . Experimental result…

Models MolecularAbsorption spectroscopyPhotosynthetic Reaction Center Complex ProteinsBiophysicsHemeRhodobacter sphaeroidesNeutron scatteringBiochemistryAnalytical Chemistrychemistry.chemical_compoundRhodobacter sphaeroidesMolecular dynamicsSpectroscopy Fourier Transform InfraredComputer SimulationMolecular Biologytrehalose protein simulation spectroscopyPhotolysisbiologyHydrogen bondMyoglobinTemperatureTrehaloseWaterHydrogen Bondingbiology.organism_classificationCrystallographyKineticsMyoglobinchemistryMembrane proteinFlash photolysisBiochimica et biophysica acta
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Photodynamics in stable complexes composed of a zinc porphyrin tripod and pyridyl porphyrins assembled by multiple coordination bonds

2010

A tripod zinc porphyrin (TPZn(3)) forms a stable 1:1 complex with gold(III) tetra(4-pyridyl)porphyrin (AuTPyP(+)) and free-base tris(4-pyridyl)porphyrin (2H-Py(3)P) in nonpolar solvents. The strong binding of TPZn(3) with AuTPyP(+) or 2H-Py(3)P results from the encapsulation of AuTPyP(+) or 2H-Py(3)P inside the cavity of TPZn(3) through multiple coordination bonds, as indicated by UV-vis-NIR, ESI-MS, (1)H NMR, electrochemistry and computational studies. The binding constants of monomer zinc porphyrin (MPZn) with AuTPyP(+) and 2H-Py(3)P drastically decrease as compared with TPZn(3). Detailed photophysical studies have been carried out on these composites using laser flash photolysis as well …

Models MolecularPorphyrinsMetalloporphyrinsPhotochemistryPyridinesTripod (photography)General Physics and Astronomychemistry.chemical_elementZincElectrochemistryPhotochemistryPorphyrinElectron TransportElectron transferchemistry.chemical_compoundMonomerchemistryFlash photolysisSinglet statePhysical and Theoretical ChemistryPhysical Chemistry Chemical Physics
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The Monod-Wyman-Changeux allosteric model accounts for the quaternary transition dynamics in wild type and a recombinant mutant human hemoglobin

2012

International audience; The acknowledged success of the Monod-Wyman-Changeux (MWC) allosteric model stems from its efficacy in accounting for the functional behavior of many complex proteins starting with hemoglobin (the paradigmatic case) and extending to channels and receptors. The kinetic aspects of the allosteric model, however, have been often neglected, with the exception of hemoglobin and a few other proteins where conformational relaxations can be triggered by a short and intense laser pulse, and monitored by time-resolved optical spectroscopy. Only recently the application of time-resolved wide-angle X-ray scattering (TR-WAXS), a direct structurally sensitive technique, unveiled th…

Models MolecularProtein ConformationcooperativityMESH: Catalytic DomainCooperativity01 natural sciencesMESH: Recombinant ProteinsHemoglobinsProtein structureMESH: Protein ConformationCatalytic Domainprotein structural dynamicsMESH: Allosteric Site0303 health sciencesMultidisciplinaryallosterybiologyMESH: KineticsChemistryBiological SciencesRecombinant Proteins[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry Molecular Biology/BiophysicsMESH: HemoglobinsAllosteric SiteMESH: Models MolecularAdultMESH: MutationStereochemistryKineticsAllosteric regulation010402 general chemistry03 medical and health sciencesprotein conformational changesflash photolysisallostery; cooperativity; flash photolysis; hemoglobin; protein conformational changes; protein structural dynamics; time-resolved wide angle x ray scattering; time-resolved x-ray scatteringHumans030304 developmental biologytime-resolved X-ray scattering; protein conformational changes; cooperativity; flash photolysisMESH: Humanstime-resolved X-ray scatteringWild typeActive sitetime-resolved wide angle x ray scatteringMESH: AdulthemoglobinSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)0104 chemical sciencesprotein conformational changeKineticsAllosteric enzymeMutationbiology.proteinHemoglobin
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High Pressure Enhances Hexacoordination in Neuroglobin and Other Globins

2005

The techniques of high applied pressure and flash photolysis have been combined to study ligand rebinding to neuroglobin (Ngb) and tomato Hb, globins that may display a His-Fe-His hexacoordination in the absence of external ligands. High pressure induces a moderate decrease in the His association rate and a large decrease in His dissociation rate, thus leading to an enhancement of the overall His affinity. The overall structural difference between penta- and hexacoordinated globins may be rather small and can be overcome by external modifications such as high pressure. Over the pressure range 0.1-700 MPa (7 kbar), the globins may show a loss of over a factor of 100 in the amplitude of the b…

Models MolecularSteric effectsProtein ConformationStereochemistryIronNeuroglobinchemistry.chemical_elementNerve Tissue ProteinsHemeLigandsBiochemistryOxygenHemoglobinschemistry.chemical_compoundSolanum lycopersicumPressureAnimalsHumansHistidineHorsesGlobinMolecular BiologyHemeBinding SitesPhotolysisMyoglobinChemistryPhotodissociationHeartCell BiologyLigand (biochemistry)GlobinsOxygenKineticsNeuroglobinBiophysicsFlash photolysisProtein BindingJournal of Biological Chemistry
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Chemistry and Photochemistry of 2,6-Bis(2-hydroxybenzilidene)cyclohexanone. An Example of a Compound Following the Anthocyanins Network of Chemical R…

2014

The kinetics and thermodynamics of the 2,6-bis(2-hydroxybenzilidene)cyclohexanone chemical reactions network was studied at different pH values using NMR, UV-vis, continuous irradiation, and flash photolysis. The chemical behavior of the system partially resembles anthocyanins and their analogue compounds. 2,6-Bis(2-hydroxybenzilidene)cyclohexanone exhibits a slow color change from yellow to red styrylflavylium under extreme acidic conditions. The rate constant for this process (5 × 10(-5) s(-1)) is pH independent and controlled by the cis-trans isomerization barrier. However, the interesting feature is the appearance of the colorless compound, 7,8-dihydro-6H-chromeno[3,2-d]xanthene, isolat…

Models MolecularXantheneMolecular StructureCyclohexanonesKineticsCyclohexanoneHydrogen-Ion ConcentrationPhotochemical ProcessesPhotochemistryChemical reactionAnthocyaninschemistry.chemical_compoundReaction rate constantchemistryBenzyl CompoundsProton NMRFlash photolysisPhysical and Theoretical Chemistryta116IsomerizationThe Journal of Physical Chemistry A
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Photoreaction Between Benzoylthiophenes and N-BOC-Tryptophan Methyl Ester‡

2005

Drug-induced photoallergy requires as the first step formation of covalent drug-protein photoadducts. One of the key amino acids involved in this process is tryptophan (Trp). In this context, several diaryl ketones, including 2-benzoylthiophene (BT), [2-(5-benzoyl-5-thienyl)]-2-methylpropanoic methyl ester (TPA methyl ester) and 4-(2-thienylcarbonyl)phenyl]-2-methylpropanoic methyl ester (SUP methyl ester) have been irradiated in the presence of N-BOC-(L)-tryptophan methyl ester. Laser flash photolysis has allowed to detect three neutral radicals (ketyl, indolyl and skatolyl radicals) resulting from formal hydrogen-atom abstraction. This correlates well with the isolation of homodimers, as …

Models Molecularchemistry.chemical_classificationKetoneFree RadicalsPhotochemistryRadicalTryptophanTryptophanStereoisomerismContext (language use)ThiophenesGeneral MedicineBiochemistryMedicinal chemistryAmino acidchemistry.chemical_compoundKetylchemistryCovalent bondOrganic chemistryFlash photolysisPhysical and Theoretical ChemistryPhotochemistry and Photobiology
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Ship-in-a-bottle synthesis of triphenylamine inside faujasite supercages and generation of the triphenylamminium radical ion

2005

Abstract The ship-in-a-bottle synthesis of triphenylamine encapsulated within basic X zeolite has been accomplished by reacting sodium diphenylamide with bromobenzene in the presence of a bifunctional palladium (Hartwig–Buchwald conditions). The presence of incarcerated triphenylamine was demonstrated by dissolving the zeolite with concentrated HF and analyzing the organic material in the dichloromethane extract. Laser flash photolysis (266 nm) gives rise to the generation of triphenylamminium radical cation detected as a transient species decaying in hundreds of microseconds. Upon repetitive cyclic voltammograms, zeolite encapsulated triphenylamine shows a reversible oxidation–reduction pr…

Organic Chemistrychemistry.chemical_elementFaujasiteengineering.materialTriphenylaminePhotochemistryBiochemistryPhotoinduced electron transferchemistry.chemical_compoundchemistryRadical ionDrug DiscoveryengineeringFlash photolysisBifunctionalZeolitePalladiumTetrahedron
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