Search results for "Formal"

showing 10 items of 1654 documents

Dinosaur Metabolism and the Allometry of Maximum Growth Rate

2016

In his 2016 paper, Myhrvold criticized ours from 2014 on maximum growth rates (Gmax, maximum gain in body mass observed within a time unit throughout an individual’s ontogeny) and thermoregulation strategies (ectothermy, endothermy) of 17 dinosaurs. In our paper, we showed that Gmax values of similar-sized extant ectothermic and endothermic vertebrates overlap. This strongly questions a correct assignment of a thermoregulation strategy to a dinosaur only based on its Gmax and (adult) body mass (M). Contrary, Gmax separated similar-sized extant reptiles and birds (Sauropsida) and Gmax values of our studied dinosaurs were similar to those seen in extant similar-sized (if necessary scaled-up) …

0106 biological sciences0301 basic medicineMetabolic stateMetabolic AnalysisPhysiologylcsh:MedicineAnimal Phylogenetics01 natural sciencesBody TemperatureDinosaursMathematical and Statistical TechniquesExtant taxonMedicine and Health SciencesBody SizeGrowth ratelcsh:Sciencemedia_commonArchosauriaData ManagementMammalsMultidisciplinaryEcologyFossilsEukaryotaRegression analysisPrehistoric AnimalshumanitiesCurve FittingPhylogeneticsBioassays and Physiological AnalysisPhysiological ParametersEctothermPhysical SciencesVertebratesRegression AnalysisStatistics (Mathematics)Research ArticleComputer and Information Sciencesmedia_common.quotation_subjectVertebrate PaleontologyBiologyResearch and Analysis Methods010603 evolutionary biologyMarsupialsFormal CommentBirds03 medical and health sciencesBasal Metabolic Rate MeasurementAnimalsEvolutionary SystematicsStatistical MethodsPaleozoologyTaxonomyEvolutionary BiologyVariableslcsh:ROrganismsReptilesBiology and Life SciencesPaleontology030104 developmental biologyEvolutionary biologyBasal metabolic rateAmniotesEarth Scienceslcsh:QAllometryPaleobiologyEnergy MetabolismZoologyMathematical FunctionsMathematicsPLoS ONE
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EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats

2020

Aim The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location Europe. Methods We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each ha…

0106 biological sciencesBos- en Landschapsecologiecoastal habitat ; diagnostic species ; distribution map ; dune vegetation European Nature Information System (EUNIS) ; European Vegetation Archive (EVA) ; expert system ; forest ; grassland ; habitat classification ; man-made habitat ; shrubland ; vegetation database ; vegetation plot ; wetlandBiodiversityDistribution (economics)Wetlandcomputer.software_genre01 natural sciencesGrasslandforestman-made habitatForest and Landscape EcologyPlant ecologybiodiversitygeography.geographical_feature_categoryEcologyVegetationPE&RCwetlandEuropeGeographyHabitathabitat classificationVegetatie Bos- en LandschapsecologieEuropaEuropean Nature Information System (EUNIS)Cartographydune vegetationvegetation plotHabitat (Ecology)databasescoastal habitat; diagnostic species; distribution map; dune vegetation; European Nature Information System (EUNIS); European Vegetation Archive (EVA); expert system; forest; grassland; habitat classification; man-made habitat; shrubland; vegetation database; vegetation plot; wetlandHàbitat (Ecologia)Management Monitoring Policy and Law010603 evolutionary biologyShrublanddistribution mapvegetationinvasionsvegetation database14. Life underwatercoastal habitat577: ÖkologieVegetatieNature and Landscape Conservationexpert systemforestsVegetationbusiness.industryEcologia vegetalwetland formalized classificationalien plants15. Life on landExpert systemfidelitydiagnostic speciesexampleVegetation Forest and Landscape Ecologygrassland[SDE.BE]Environmental Sciences/Biodiversity and Ecologybusinessman‐made habitatshrublandcomputer010606 plant biology & botanyEuropean Vegetation Archive (EVA)
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European Formalism and Empiriocriticism : Formalism within the International Empiriocritical Movement

2020

Abstract This paper argues that Russian Formalism is to be considered a constitutive part of the international empiriocritical movement—Ernst Mach (1838—1916) and Richard Avenarius’s (1843—1896). The conceptual parallelism between Empiriocriticism and Formalism is striking indeed. Thus, the cornerstones of the empiriocritical approach—the concept of series [Reihe] and the concept of elements [Elemente], understood as sensations [Empfindungen]—are plainly recognizable within formalist theories: the notion of ‘series’ (for example, the notion of ‘literary series’ or ‘poetic series’, leading to the famous concept of ‘literariness’, literaturnost’) and the very formalist idea of a necessarily p…

0106 biological sciencesRussian Formalism050101 languages & linguisticsGerman-Austrian FormalismEmotivity[SHS.LITT]Humanities and Social Sciences/LiteratureFormalism (philosophy)Philosophy05 social sciencesEmpiriocriticism010603 evolutionary biology01 natural sciencesClassical mechanicsPoetic language0501 psychology and cognitive sciences[SHS.LANGUE]Humanities and Social Sciences/Linguistics
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Dynamic Design Intents Capture with Formal Ontology and Perdurants Object Concept for Collaborative Product Design

2016

Loss of design intents and related information throughout the lifecycle of products are common. Capturing design intents of an assembly, which include a temporal (dynamic) stages, is even harder. This research work aims to enhance the spatiotemporal mereotopology (STM) based ontology in tune with the contemporary efforts in this research domain. The main idea with such STM ontology is to capture dynamic design intents and develop an integrated data translation framework from Computer Aided Design (CAD) system to a visualization system. This integration framework is intended to enhance design sharing in a collaborative environment. In this paper, the framework is demonstrated with a simple m…

0209 industrial biotechnology021103 operations researchProduct designComputer science0211 other engineering and technologies02 engineering and technologyOntology (information science)Object (computer science)computer.software_genreVisualization020901 industrial engineering & automationFormal ontologyUnified Modeling LanguageHuman–computer interactionComputer Aided DesigncomputerMereotopologycomputer.programming_language2016 International Conference on Collaboration Technologies and Systems (CTS)
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Formal ontology and CAD integration with macro parametric approach

2017

ABSTRACTThis paper discusses an ontological integration framework in the context of mereotopological formal ontology and CAD systems. Based on a comprehensive literature review of current design knowledge management and formal ontology research works, the authors propose the integration framework that can incorporate design knowledge with CAD systems. The primary role of mereotopology in this research work is the formal representation of design knowledge for the 3D solid assembly models. Most of the existing research works about design ontology present an abstract form and often require significant additional efforts to be integrated into CAD systems. Thus, this work introduces a formal ont…

0209 industrial biotechnologyComputer scienceProcess ontologyOntology-based data integration0211 other engineering and technologiesComputational MechanicsCAD02 engineering and technologyProtégéDesign knowledgeComputer Graphics and Computer-Aided DesignComputational Mathematics020901 industrial engineering & automationFormal ontologySystems engineeringOntologyMereotopology021106 design practice & managementComputer-Aided Design and Applications
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Evaluation Framework for Analyzing the Applicability of Criteria Lists for the Selection of Requirements Management Tools Supporting Distributed Coll…

2016

Effective requirements management and enabling tools are critical for successfully developing and maintaining services and products. The identification and selection of an appropriate requirements management tool can be a costly, time-consuming, and error-prone undertaking especially in the context of software product line requirements management, requiring the tools to support both product and platform development activities that often involve geographically distributed, collaborating, and competing stakeholders. Criteria lists have been developed to facilitate the selection. This research (1) creates an evaluation framework to review the applicability of the lists for the selection of req…

0209 industrial biotechnologyRequirementBusiness requirementsComputer sciencesoftware managementSoftware requirements specification02 engineering and technologySoftware peer reviewApplication lifecycle management020901 industrial engineering & automationsoftware product lines0202 electrical engineering electronic engineering information engineeringSoftware requirementsformal verificationSoftware product lineRequirements analysisVision documentta113formal specificationsoftware toolsRequirements managementRequirements traceabilitybusiness.industrySoftware as a serviceSoftware developmenthallintajärjestelmät020207 software engineeringvaatimusmäärittelytdistributed collaborationMarket requirements documentRequirement prioritizationSoftware constructiontuotekehitysohjelmistoliiketoimintaSoftware engineeringbusinessSoftware project management2016 49th Hawaii International Conference on System Sciences (HICSS)
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Infrared microspectroscopic determination of collagen cross-links in articular cartilage

2017

Collagen forms an organized network in articular cartilage to give tensile stiffness to the tissue. Due to its long half-life, collagen is susceptible to cross-links caused by advanced glycation end-products. The current standard method for determination of cross-link concentrations in tissues is the destructive high-performance liquid chromatography (HPLC). The aim of this study was to analyze the cross-link concentrations nondestructively from standard unstained histological articular cartilage sections by using Fourier transform infrared (FTIR) microspectroscopy. Half of the bovine articular cartilage samples ( n = 27 ) were treated with threose to increase the collagen cross-linking whi…

0301 basic medicineCartilage ArticularGlycation End Products AdvancedcollagenSpectrophotometry InfraredPROTEOGLYCAN01 natural sciencesHigh-performance liquid chromatographychemistry.chemical_compoundBiomedicinsk laboratorievetenskap/teknologiPartial least squares regressionBiomedical Laboratory Science/Technologyinfrared spectroscopyPyridinolineThreoseChemistryMedicinsk bildbehandlingSTIFFNESSinfrapunaspektroskopiata3141AnatomyAtomic and Molecular Physics and OpticsDIFFUSIONElectronic Optical and Magnetic Materialsmedicine.anatomical_structuremultivariate analysisGLYCATION END-PRODUCTSNONENZYMATIC GLYCATIONBiomedical EngineeringInfrared spectroscopyI COLLAGENFORMALIN FIXATIONcross-linksOrthopaedicsBiomaterials03 medical and health sciencesmedicineAnimalsarticular cartilageFourier transform infrared spectroscopyPentosidineLeast-Squares Analysista217ChromatographyCartilage010401 analytical chemistry3126 Surgery anesthesiology intensive care radiology0104 chemical sciencesMedical Image Processing030104 developmental biologyOrtopedi1182 Biochemistry cell and molecular biologyCattleJournal of Biomedical Optics
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Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

2019

Single-cell transcriptomic assays have enabled the de novo reconstruction of lineage differentiation trajectories, along with the characterization of cellular heterogeneity and state transitions. Several methods have been developed for reconstructing developmental trajectories from single-cell transcriptomic data, but efforts on analyzing single-cell epigenomic data and on trajectory visualization remain limited. Here we present STREAM, an interactive pipeline capable of disentangling and visualizing complex branching trajectories from both single-cell transcriptomic and epigenomic data. We have tested STREAM on several synthetic and real datasets generated with different single-cell techno…

0301 basic medicineEpigenomicsMultifactor Dimensionality ReductionComputer scienceGeneral Physics and Astronomy02 engineering and technologyOmics dataMyoblastsMiceSingle-cell analysisGATA1 Transcription FactorMyeloid CellsLymphocyteslcsh:ScienceData processingMultidisciplinaryQGene Expression Regulation DevelopmentalRNA sequencingCell DifferentiationGenomics021001 nanoscience & nanotechnologyData processingDNA-Binding ProteinsInterferon Regulatory FactorsSingle-Cell Analysis0210 nano-technologyAlgorithmsOmics technologiesSignal TransductionLineage differentiationScienceComputational biologyGeneral Biochemistry Genetics and Molecular BiologyArticle03 medical and health sciencesErythroid CellsAnimalsCell LineageGeneral Chemistrydevelopmental trajectories visualizationHematopoietic Stem CellsPipeline (software)Visualization030104 developmental biologyTheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGESCellular heterogeneitySingle cell analysilcsh:QGene expressionTranscriptomeTranscription FactorsNature Communications
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Alignment-free sequence comparison using absent words

2018

Sequence comparison is a prerequisite to virtually all comparative genomic analyses. It is often realised by sequence alignment techniques, which are computationally expensive. This has led to increased research into alignment-free techniques, which are based on measures referring to the composition of sequences in terms of their constituent patterns. These measures, such as $q$-gram distance, are usually computed in time linear with respect to the length of the sequences. In this paper, we focus on the complementary idea: how two sequences can be efficiently compared based on information that does not occur in the sequences. A word is an {\em absent word} of some sequence if it does not oc…

0301 basic medicineFOS: Computer and information sciencesFormal Languages and Automata Theory (cs.FL)Computer Science - Formal Languages and Automata TheorySequence alignmentInformation System0102 computer and information sciencesCircular wordAbsent words01 natural sciencesUpper and lower boundsSequence comparisonTheoretical Computer ScienceCombinatorics03 medical and health sciencesComputer Science - Data Structures and AlgorithmsData Structures and Algorithms (cs.DS)Absent wordCircular wordsMathematicsSequenceSettore INF/01 - InformaticaProcess (computing)q-gramComputer Science Applications1707 Computer Vision and Pattern Recognitionq-gramsComposition (combinatorics)Computer Science Applications030104 developmental biologyComputational Theory and MathematicsForbidden words010201 computation theory & mathematicsFocus (optics)Forbidden wordWord (computer architecture)Information SystemsInteger (computer science)
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Could formaldehyde induce mutagenic and cytotoxic effects in buccal epithelial cells during anatomy classes?

2017

Background Due to increased formaldehyde exposure, carcinogenic to humans, several researches have been studying the potential toxicity and the safe levels for human beings. The aim of this study was to investigate mutagenicity and cytotoxicity in buccal epithelial exfoliated cells (BEC) of students subjected to formaldehyde (FA) during anatomy classes. Material and Methods BEC were collected periodically from 17 volunteers of undergraduate programs, who had participated in practical anatomy classes, before and after FA exposure. Cells were stained according to Feulgen method and then micronucleus test was applied. A total of 1,500 cells were assessed per individual in this study for the mi…

0301 basic medicineMaleProgrammed cell death03 medical and health sciencesFixativesYoung Adult0302 clinical medicineFormaldehydeMedicineCytotoxic T cellHumansFeulgen stainALDEÍDOSCytotoxicityGeneral DentistryCarcinogenOral Medicine and Pathologybusiness.industryCytotoxinsResearchMouth MucosaEpithelial Cells030206 dentistryBuccal administrationAnatomy:CIENCIAS MÉDICAS [UNESCO]030104 developmental biologyOtorhinolaryngologyMutagenesisMicronucleus testUNESCO::CIENCIAS MÉDICASSurgeryFemaleAnatomybusinessMicronucleusMedicina Oral, Patología Oral y Cirugía Bucal
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