Search results for "Genetics"

2015

The Indonesian island of Sulawesi harbors a highly endemic and diverse fauna sparking fascination since long before Wallace’s contemplation of biogeographical patterns in the region. Allopatric diversification driven by geological or climatic processes has been identified as the main mechanism shaping present faunal distribution on the island. There is both consensus and conflict among range patterns of terrestrial species pointing to the different effects of vicariant events on once co-distributed taxa. Tarsiers, small nocturnal primates with possible evidence of an Eocene fossil record on the Asian mainland, are at present exclusively found in insular Southeast Asia. Sulawesi is hotspot o…

A new Lagomorph from the late Miocene of Chad (central Africa)

2007

A new species of the genus Serengetilagus, here named S. tchadensis n. sp., is described from Toros Menalla deposits, Late Miocene of Djurab Erg (North Chad, central Africa). It shows primitive features, such as a simple archaeolagine-type p3, with only two main external folds, and upper cheek teeth strongly widened with wear. Its size and skeletal features resemble S. praecapensis from the Middle Pliocene of Laetoli (Tanzania). They differ in several cranial and dental features (choanae width, zygoma, orbits, basicranial-basifacial angle, lack of hypoflexus in P2, short and asymmetric hypoflexus in P3-M2, lack of lingual folds in p3, etc). Individual variations in S. tchadensis n. sp. appr…

Phylogeography of a Tertiary relict plant,Meconopsis cambrica(Papaveraceae), implies the existence of northern refugia for a temperate herb

2012

The perennial herb Meconopsis cambrica, a western European endemic, is the only European species of the otherwise Himalayan genus Meconopsis and has been interpreted as a Tertiary relict species. Using rbcL and ITS sequence variation, we date the split between M. cambrica and its sister clade Papaver s.str. to the Middle to Upper Miocene (12.8 Myr, 6.4–19.2 Myr HPD). Within M. cambrica, cpDNA sequence variation reveals the existence of two groups of populations with a comparable level of genetic variation: a northern group from Great Britain, the Massif Central, the western Pyrenees and the Iberian System, and a southern group from the central and eastern Pyrenees. Populations from the Cant…

Many More Consumers Not Always Induce Stronger Competition: Weaker Interspecific Competition Despite Higher Species Richness in Secondary Feeding Gui…

2021

The species functional structuration (specifically in terms of species richness and average intensity of interspecific competition) is widely varying among species communities and this point is now very well documented in literature. But, what about the species functional structuration within the different feeding guilds that coexist in a same local community – in particular the primary and the secondary feeding guilds? Are there significant differences – or not – between them in this respect? This rather fundamental issue does not seem having been addressed yet, at least using appropriate investigative tools. However, a series of recently published case studies, precisely implementing such…

The identity and geographical distribution of Jacobaea vulgaris subsp. gotlandica , supposedly endemic to Gotland and Öland (Sweden)-the importance o…

2009

The identity of Jacobaea vulgaris Gaertn. subsp. gotlandica (Neum.) B. Nord., hitherto considered an endemic to the Swedish islands Oland and Gotland, was investigated using nrITS and trnT-trnL intergenic spacer sequences and a broad sample of species and accessions particularly of J. vulgaris. We found that J. vulgaris subsp. gotlandica is a distinct evolutionary lineage more widespread in Europe than previously thought and may be a southeastern European steppe floristic element with outliers on the large Baltic islands. Our entirely unexpected findings underline the need of multiple intraspecific sampling in species-level phylogenetic studies.

A multi-gene approach reveals a complex evolutionary history in the Cyanistes species group

2011

Quaternary climatic oscillations have been considered decisive in shaping much of the phylogeographic structure around the Mediterranean Basin. Within this paradigm, peripheral islands are usually considered as the endpoints of the colonization processes. Here, we use nuclear and mitochondrial markers to investigate the phylogeography of the blue tit complex (blue tit Cyanistes caeruleus, Canary blue tit C. teneriffae and azure tit C. cyanus), and assess the role of the Canary Islands for the geographic structuring of genetic variation. The Canary blue tit exhibits strong genetic differentiation within the Canary Islands and, in combination with other related continental species, provides a…

Range-wide phylogeography and taxonomy of the marine rock pools dweller Tigriopus fulvus (Fischer, 1860) (Copepoda, Harpacticoida)

2021

In the light of the wide distribution and ecological importance of the genus Tigriopus in coastal rock pool habitats, and of its frequent use in aquaculture and as a model organism, we investigated the identity of the Atlantic–Mediterranean Tigriopus populations and elucidated their taxonomy and patterns of morphological and genetic diversity. In order to reach these goals, an “integrative taxonomy” multisource approach was implemented. First, we investigated the constancy and taxonomical value of the morphological characters currently used to distinguish among the Tigriopus species occurring in the Mediterranean and in Eastern Atlantic area north of the Tropic of Cancer, and checked the ac…

Effects of military training on plasma amino acid concentrations and their associations with overreaching.

2020

Amino acids are thought to have a key role in the processes contributing to overreaching development through their metabolic properties and neuronal functions. In the present study, the effects of 10-week military training on the concentrations of 19 amino acids were investigated. Plasma amino acid concentrations were measured at rest from 53 healthy male conscripts on weeks 1, 4, 7, and 9 of their military service. Conscripts were classified as overreached and non-overreached. Overreaching classification was based on fulfilling at least three of five criteria: greater than 5% decrease in maximal oxygen uptake, increased rating perceived exertion (RPE), and decreased lactate-RPE ratio in s…

A luminal glycoprotein drives dose-dependent diameter expansion of the Drosophila melanogaster hindgut tube

2012

An important step in epithelial organ development is size maturation of the organ lumen to attain correct dimensions. Here we show that the regulated expression of Tenectin (Tnc) is critical to shape the Drosophila melanogaster hindgut tube. Tnc is a secreted protein that fills the embryonic hindgut lumen during tube diameter expansion. Inside the lumen, Tnc contributes to detectable O-Glycans and forms a dense striated matrix. Loss of tnc causes a narrow hindgut tube, while Tnc over-expression drives tube dilation in a dose-dependent manner. Cellular analyses show that luminal accumulation of Tnc causes an increase in inner and outer tube diameter, and cell flattening within the tube wall,…

CUDA-BLASTP: Accelerating BLASTP on CUDA-enabled graphics hardware

2011

Scanning protein sequence database is an often repeated task in computational biology and bioinformatics. However, scanning large protein databases, such as GenBank, with popular tools such as BLASTP requires long runtimes on sequential architectures. Due to the continuing rapid growth of sequence databases, there is a high demand to accelerate this task. In this paper, we demonstrate how GPUs, powered by the Compute Unified Device Architecture (CUDA), can be used as an efficient computational platform to accelerate the BLASTP algorithm. In order to exploit the GPU's capabilities for accelerating BLASTP, we have used a compressed deterministic finite state automaton for hit detection as wel…