Search results for "Helminths"

showing 10 items of 202 documents

A clustering package for nucleotide sequences using Laplacian Eigenmaps and Gaussian Mixture Model.

2018

International audience; In this article, a new Python package for nucleotide sequences clustering is proposed. This package, freely available on-line, implements a Laplacian eigenmap embedding and a Gaussian Mixture Model for DNA clustering. It takes nucleotide sequences as input, and produces the optimal number of clusters along with a relevant visualization. Despite the fact that we did not optimise the computational speed, our method still performs reasonably well in practice. Our focus was mainly on data analytics and accuracy and as a result, our approach outperforms the state of the art, even in the case of divergent sequences. Furthermore, an a priori knowledge on the number of clust…

0301 basic medicineNematoda01 natural sciencesGaussian Mixture Model[STAT.ML]Statistics [stat]/Machine Learning [stat.ML][MATH.MATH-ST]Mathematics [math]/Statistics [math.ST]ComputingMilieux_MISCELLANEOUScomputer.programming_language[STAT.AP]Statistics [stat]/Applications [stat.AP]Phylogenetic treeDNA ClusteringGenomicsHelminth ProteinsComputer Science Applications[STAT]Statistics [stat]010201 computation theory & mathematics[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]Data analysisEmbeddingA priori and a posteriori[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Health Informatics0102 computer and information sciences[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]Biology[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing03 medical and health sciences[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]Laplacian EigenmapsAnimalsCluster analysis[SDV.GEN]Life Sciences [q-bio]/GeneticsModels Geneticbusiness.industryPattern recognitionNADH DehydrogenaseSequence Analysis DNAPython (programming language)Mixture model[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationVisualization030104 developmental biologyComputingMethodologies_PATTERNRECOGNITIONPlatyhelminths[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET]Programming LanguagesArtificial intelligence[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]businesscomputerComputers in biology and medicine
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Fasciola spp: Mapping of the MF6 epitope and antigenic analysis of the MF6p/HDM family of heme-binding proteins

2017

MF6p/FhHDM-1 is a small cationic heme-binding protein which is recognized by the monoclonal antibody (mAb) MF6, and abundantly present in parenchymal cells and secreted antigens of Fasciola hepatica. Orthologs of this protein (MF6p/HDMs) also exist in other causal agents of important foodborne trematodiasis, such as Clonorchis sinensis, Opisthorchis viverrini and Paragonimus westermani. Considering that MF6p/FhHDM-1 is relevant for heme homeostasis in Fasciola and was reported to have immunomodulatory properties, this protein is expected to be a useful target for vaccination. Thus, in this study we mapped the epitope recognized by mAb MF6 and evaluated its antigenicity in sheep. The sequenc…

0301 basic medicineParagonimus westermaniFasciola sppPhysiologyProtein ConformationFlatwormslcsh:MedicineProtein Structure PredictionBiochemistryEpitopeAntigenicEpitopes0302 clinical medicineAnimal CellsImmune PhysiologyMedicine and Health SciencesMacromolecular Structure AnalysisMF6p/HDMEnzyme-Linked Immunoassayslcsh:ScienceMammalsNeuronsImmune System ProteinsMultidisciplinaryFasciolabiologyVaccinationEukaryotaAntibodies MonoclonalRuminantsDendritic StructureVertebratesCellular TypesAntibodyResearch ArticleHemeproteinsProtein StructureAntigenicityFascioliasisHeme bindingImmunology030231 tropical medicineAntibodies HelminthEnzyme-Linked Immunosorbent AssayHemeResearch and Analysis MethodsTrematodesAntibodiesHeme-Binding Proteins03 medical and health sciencesHelminthsparasitic diseasesParasitic DiseasesFasciola hepaticaAnimalsImmunoassaysMolecular BiologySheeplcsh:ROrganismsBiology and Life SciencesProteinsCell BiologyDendritesNeuronal DendritesFasciola hepaticabiology.organism_classificationInvertebratesMolecular biologyFasciola030104 developmental biologyEpitope mappingCellular NeuroscienceAntigens HelminthAmniotesImmunologic Techniquesbiology.proteinlcsh:QCarrier ProteinsEpitope MappingNeuroscience
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Potential Influence of Helminth Molecules on COVID-19 Pathology

2020

In recent months, the parasitology research community has been tasked with investigation of the influence of parasite coinfection on coronavirus disease 2019 (COVID-19) outcomes. Herein, we share our approach to analyze the effect of the trematode Fasciola hepatica as a modulator of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and of COVID-19 pathology.

0301 basic medicinePathologymedicine.medical_specialtyFascioliasisCoronavirus disease 2019 (COVID-19)Helminth proteinSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)viruses030231 tropical medicineInfection modulation03 medical and health sciences0302 clinical medicineAntigenic ModulationPathology modulationparasitic diseasesMedicineParasite hostingFasciola hepaticaHelminthsAnimalsHumansImmunologic FactorsInflammationHelminth parasitesRespiratory Distress SyndromebiologyForumbusiness.industryCoinfectionvirus diseasesCOVID-19Helminth ProteinsFasciola hepaticamedicine.diseasebiology.organism_classificationImmunity Innate030104 developmental biologyInfectious DiseasesParasitologyCoinfectionParasitologybusinessTrends in Parasitology
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Potential risk analysis of human anisakiasis through the consumption of mackerel, Scomber scombrus, sold at Spanish supermarkets

2016

Abstract Herein, the potential risk of human anisakiasis through the consumption of mackerel, Scomber scombrus , sold at nationwide Spanish supermarket chains is assessed, by means of the identification of anisakid and other nematode species found, and the analysis of intrinsic and extrinsic factors that may influence the prevalence and abundance of nematode worms, as well as their presence in the viscera or in the flesh. 231 fresh mackerel specimens caught between 2008 and 2014 (140 from the Atlantic and 91 from the Mediterranean), captured in autumn and spring and acquired at nationwide Spanish supermarket chains, were examined dissecting their viscera and submitting their flesh to artifi…

0301 basic medicineScomberVeterinary medicinebiologyFleshAnisakis simplexMackerelAquatic animal030108 mycology & parasitologybiology.organism_classificationAnisakisArtificial digestionFishery03 medical and health sciences030104 developmental biologyHelminthsFood ScienceBiotechnologyFood Control
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Resistance against Echinostoma caproni (Trematoda) secondary infections in mice is not dependent on the ileal protein production

2016

Echinostoma caproni (Trematoda: Echinostomatidae) is an intestinal trematode, which has been widely employed to investigate the factors determining the rejection of intestinal helminths. Protein production patterns of intestinal epithelial cells are related to the infection-induced changes that determine the course of E. caproni infections. Herein, we compare the protein production profiles in the ileum of four experimental groups of mice: control; infected; dewormed and reinfected. Worm burdens were significantly lower in secondary infections, confirming the generation of partial resistance to homologous secondary infections in mice. However, quantitative comparison by 2D-DIGE showed that …

0301 basic medicineSecondary infection030231 tropical medicineBiophysicsIleumBiochemistryMass SpectrometryMice03 medical and health sciences0302 clinical medicineIleumEchinostomaProtein biosynthesismedicineAnimalsHelminthsTissue homeostasisCell ProliferationDisease ResistanceEchinostomiasisCell DeathbiologyCoinfectionEpithelial Cellsbiology.organism_classificationPraziquantel030104 developmental biologymedicine.anatomical_structureProtein BiosynthesisImmunologyTrematodaEchinostomamedicine.drugJournal of Proteomics
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Prevalence and intensity of neglected tropical diseases (schistosomiasis and soil-transmitted helminths) amongst rural female pupils in Ugu district,…

2020

Background Inadequate water supply and sanitation adversely affects the health and socio-economic development of communities and places them at risk of contracting schistosomiasis and soil-transmitted helminths (STHs). The aim of this study was to quantify the prevalence and intensity of schistosomiasis (bilharzia) and STHs amongst female school-going pupils in Ugu district. Methods A descriptive cross-sectional study was conducted in Ugu district amongst primary school pupils from 18 randomly selected schools in 2010. A structured questionnaire was used to collect information on the history and knowledge of bilharzia of 1057 pupils. One stool and 3 consecutive days of urine samples were co…

0301 basic medicineTrichuriasis030106 microbiologyprevalenceSchistosomiasislcsh:Infectious and parasitic diseases03 medical and health sciences0302 clinical medicineAscariasisEnvironmental healthschistosomiasisparasite control programmeparasitic diseasesmedicinelcsh:RC109-216030212 general & internal medicinesoil-transmitted helminthsEggs per gramOriginal ResearchSchistosoma haematobiumschistosoma haematobiumbiologybusiness.industrytrichuris trichiurabiology.organism_classificationmedicine.diseaseascaris lumbricoidesNeglected tropical diseasesTrichuris trichiurawater contact.Ascaris lumbricoidesbusinessintensitySouthern African Journal of Infectious Diseases
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First Data on the Helminth Community of the Smallest Living Mammal on Earth, the Etruscan Pygmy Shrew, Suncus etruscus (Savi, 1822) (Eulipotyphla: So…

2021

Suncus etruscus is the smallest living mammal on Earth by mass. Most adults weigh 1.8–3 g with a body length of 35–48 mm. Catching it in small mammal traps in nature is extremely difficult due to its minute size, and therefore special trapping methods must be used. We had the unique opportunity of studying, for the first time, the helminth parasites of 166 individuals of S. etruscus, part of the largest collection in the world, which belonged to the French scientist Dr Roger Fons (1942–2016). A total of 150 individuals were captured in the Banyuls-Cerbère area (France) and 16 in the island of Corsica (France). We found seven helminth species, specifically, the cestodes Joyeuxiella pasqualei…

0301 basic medicineVeterinary medicineZoologyMesocestoidesBiology<i>Joyeuxiella pasqualei larvae</i>Trapping methods03 medical and health sciences<i>Pseudhymenolepis</i> sp.biology.animalSF600-1100HelminthsSuncus etruscus<i>Suncus etruscus</i><i>Staphylocystis claudevaucheri</i><i>S. cerberensis</i>LarvaGeneral VeterinaryShrew<i>Mesocestoides</i> sp. <i>larvae</i><i>Aonchotheca</i> sp.Insectivore030108 mycology & parasitologybiology.organism_classificationhelminth community<i>S. banyulsensis</i>030104 developmental biologyQL1-991Animal Science and ZoologyMammalZoologyAnimals
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Reduced prevalence of soil-transmitted helminths and high frequency of protozoan infections in the surrounding urban area of Curitiba, Paraná, Brazil

2019

Human populations living in the surrounding urban areas of large Brazilian cities have increased vulnerability to intestinal parasites. However, the epidemiological scenario of soil-transmitted helminths (STH) in Curitiba, Paraná's main city, remains largely unknown. To bridge this gap of knowledge, this study aims to determine the prevalence of intestinal parasites and to investigate potential transmission pathways of the most prevalent species detected. We conducted a cross-sectional epidemiological study between July and September 2014 among schoolchildren in urban and peri-urban (deprived) areas of the municipality of Campo do Tenente, Curitiba. A total of 549 stool samples were used fo…

0301 basic medicineVeterinary medicinemedicine.medical_specialtyEpidemiology030231 tropical medicinePopulationSchoolchildrenUrban areaArticlelcsh:Infectious and parasitic diseaseslaw.invention03 medical and health sciences0302 clinical medicineCommon specieslawProtozoan infectionparasitic diseasesEpidemiologymedicineHelminthsCuritibalcsh:RC109-216Paranáeducationgeographyeducation.field_of_studyBlastocystisgeography.geographical_feature_categorybiologySoil-transmitted helminths030108 mycology & parasitologymedicine.diseasebiology.organism_classificationInfectious DiseasesTransmission (mechanics)BlastocystisParasitologyBrazilParasite Epidemiology and Control
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Heterophyid trematodes (Digenea) from penguins: A new species of Ascocotyle Looss, 1899, first description of metacercaria of Ascocotyle (A.) patagon…

2019

Two species of heterophyid trematodes were found in the Magellanic penguin, Spheniscus magellanicus (Forster), from Patagonia, Argentina. Ascocotyle (Ascocotyle) patagoniensis Hernández-Orts et al. (2012) is re-described based on new, properly fixed specimens (original material from South American sea lion, Otaria flavescens Shaw, was from frozen hosts). Metacercariae of this species are reported and described for the first time from the heart of the silversides, Odontesthes argentinensis (Valenciennes) and O. smitti (Lahille), from Patagonia. Ascocotyle (Phagicola) cameliae n. sp. is described from the intestine of S. magellanicus. The new species is placed into the subgenus Phagicola Faus…

0301 basic medicinebiology030231 tropical medicineZoology030108 mycology & parasitologyOtaria flavescensbiology.organism_classificationSpheniscus magellanicusDigenea03 medical and health sciences0302 clinical medicineInfectious Diseaseslcsh:ZoologySuckerHelminthsAnimal Science and ZoologyParasitologyTaxonomy (biology)lcsh:QL1-991SubgenusSpecies inquirendaInternational Journal for Parasitology: Parasites and Wildlife
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Unusual multiparasitism causes overweight in a wood mouse,Apodemus sylvaticus(Rodentia: Muridae), from a post-fire regeneration area

2016

Multiparasitism is a common ecological phenomenon, being the norm rather than the exception, in the wild. This article describes the case of a wood mouse, Apodemus sylvaticus, originating from a post-fire regeneration area, infected with multiple helminth species and remarkable overweight. The mouse analyzed was captured at a post-fire regeneration site in the Serra Calderona Natural Park (Comunitat Valenciana, Spain). The rodent was captured and marked for the first time in the spring of 2011, weighing 22.5 g. When it was recaptured in the winter of 2012, it weighed 44.0 g. The mouse was parasitized by a total of 31 helminths belonging to seven species, including six Taenia parva metacesto…

0301 basic medicinebiologyRodentHost (biology)ParasitismZoology030108 mycology & parasitologybiology.organism_classification03 medical and health sciencesWood mousebiology.animalparasitic diseasesApodemusHelminthsAnimal Science and ZoologyRegeneration (ecology)Ecology Evolution Behavior and SystematicsMuridaeFolia Zoologica
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