Search results for "High-dimension"

Penalized regression and clustering in high-dimensional data

The main goal of this Thesis is to describe numerous statistical techniques that deal with high-dimensional genomic data. The Thesis begins with a review of the literature on penalized regression models, with particular attention to least absolute shrinkage and selection operator (LASSO) or L1-penalty methods. L1 logistic/multinomial regression models are used for variable selection and discriminant analysis with a binary/categorical response variable. The Thesis discusses and compares several methods that are commonly utilized in genetics, and introduces new strategies to select markers according to their informative content and to discriminate clusters by offering reduced panels for popul…

ℓ1-Penalized Methods in High-Dimensional Gaussian Markov Random Fields

2016

In the last 20 years, we have witnessed the dramatic development of new data acquisition technologies allowing to collect massive amount of data with relatively low cost. is new feature leads Donoho to define the twenty-first century as the century of data. A major characteristic of this modern data set is that the number of measured variables is larger than the sample size; the word high-dimensional data analysis is referred to the statistical methods developed to make inference with this new kind of data. This chapter is devoted to the study of some of the most recent ℓ1-penalized methods proposed in the literature to make sparse inference in a Gaussian Markov random field (GMRF) defined …

Designing time and frequency entanglement for generation of high-dimensional photon cluster states

2020

The development of quantum technologies for quantum information science demands the realization and precise control of complex (multipartite and high dimensional) entangled systems on practical and scalable platforms. Quantum frequency combs (QFCs) generated via spontaneous four-wave mixing in integrated microring resonators represent a powerful tool towards this goal. They enable the generation of complex photon states within a single spatial mode as well as their manipulation using standard fiber-based telecommunication components. Here, we review recent progress in the development of QFCs, with a focus on our results that highlight their importance for the realization of complex quantum …

Entanglement transfer, accumulation and retrieval via quantum-walk-based qubit-qudit dynamics

2020

The generation and control of quantum correlations in high-dimensional systems is a major challenge in the present landscape of quantum technologies. Achieving such non-classical high-dimensional resources will potentially unlock enhanced capabilities for quantum cryptography, communication and computation. We propose a protocol that is able to attain entangled states of $d$-dimensional systems through a quantum-walk-based {\it transfer \& accumulate} mechanism involving coin and walker degrees of freedom. The choice of investigating quantum walks is motivated by their generality and versatility, complemented by their successful implementation in several physical systems. Hence, given t…

Comparison of classification methods that combine clinical data and high-dimensional mass spectrometry data

2013

Background The identification of new diagnostic or prognostic biomarkers is one of the main aims of clinical cancer research. Technologies like mass spectrometry are commonly being used in proteomic research. Mass spectrometry signals show the proteomic profiles of the individuals under study at a given time. These profiles correspond to the recording of a large number of proteins, much larger than the number of individuals. These variables come in addition to or to complete classical clinical variables. The objective of this study is to evaluate and compare the predictive ability of new and existing models combining mass spectrometry data and classical clinical variables. This study was co…

Memory Effects in High-Dimensional Systems Faithfully Identified by Hilbert–Schmidt Speed-Based Witness

2022

A witness of non-Markovianity based on the Hilbert–Schmidt speed (HSS), a special type of quantum statistical speed, has been recently introduced for low-dimensional quantum systems. Such a non-Markovianity witness is particularly useful, being easily computable since no diagonalization of the system density matrix is required. We investigate the sensitivity of this HSS-based witness to detect non-Markovianity in various high-dimensional and multipartite open quantum systems with finite Hilbert spaces. We find that the time behaviors of the HSS-based witness are always in agreement with those of quantum negativity or quantum correlation measure. These results show that the HSS-based witness…

Inferring networks from high-dimensional data with mixed variables

2014

We present two methodologies to deal with high-dimensional data with mixed variables, the strongly decomposable graphical model and the regression-type graphical model. The first model is used to infer conditional independence graphs. The latter model is applied to compute the relative importance or contribution of each predictor to the response variables. Recently, penalized likelihood approaches have also been proposed to estimate graph structures. In a simulation study, we compare the performance of the strongly decomposable graphical model and the graphical lasso in terms of graph recovering. Five different graph structures are used to simulate the data: the banded graph, the cluster gr…

Synthetic phenomenology and high-dimensional buffer hypothesis

2012

Synthetic phenomenology typically focuses on the analysis of simplified perceptual signals with small or reduced dimensionality. Instead, synthetic phenomenology should be analyzed in terms of perceptual signals with huge dimensionality. Effective phenomenal processes actually exploit the entire richness of the dynamic perceptual signals coming from the retina. The hypothesis of a high-dimensional buffer at the basis of the perception loop that generates the robot synthetic phenomenology is analyzed in terms of a cognitive architecture for robot vision the authors have developed over the years. Despite the obvious computational problems when dealing with high-dimensional vectors, spaces wit…

Sample size planning for survival prediction with focus on high-dimensional data

2011

Sample size planning should reflect the primary objective of a trial. If the primary objective is prediction, the sample size determination should focus on prediction accuracy instead of power. We present formulas for the determination of training set sample size for survival prediction. Sample size is chosen to control the difference between optimal and expected prediction error. Prediction is carried out by Cox proportional hazards models. The general approach considers censoring as well as low-dimensional and high-dimensional explanatory variables. For dimension reduction in the high-dimensional setting, a variable selection step is inserted. If not all informative variables are included…

Sparse relative risk regression models

2020

Summary Clinical studies where patients are routinely screened for many genomic features are becoming more routine. In principle, this holds the promise of being able to find genomic signatures for a particular disease. In particular, cancer survival is thought to be closely linked to the genomic constitution of the tumor. Discovering such signatures will be useful in the diagnosis of the patient, may be used for treatment decisions and, perhaps, even the development of new treatments. However, genomic data are typically noisy and high-dimensional, not rarely outstripping the number of patients included in the study. Regularized survival models have been proposed to deal with such scenarios…