Search results for "Horizontal"
showing 10 items of 251 documents
Mitochondrial introgression suggests extensive ancestral hybridization events amongSaccharomycesspecies
2015
1.AbstractHorizontal Gene Transfer (HGT) in eukaryotic plastids and mitochondrial genomes is common, and plays an important role in organism evolution. In yeasts, recent mitochondrial HGT has been suggested betweenS. cerevisiaeandS. paradoxus. However, few strains have been explored due to the lack of accurate mitochondrial genome annotations. Mitochondrial genome sequences are important to understand how frequent these introgressions occur and their role in cytonuclear incompatibilities and fitness. In fact, most of the Bateson-Dobzhansky-Muller genetic incompatibilities described in yeasts are driven by cytonuclear incompatibilities. In this study, we have explored the mitochondrial inher…
Horizontal gene transfer to a defensive symbiont with a reduced genome amongst a multipartite beetle microbiome
2019
ABSTRACTThe loss of functions required for independent life when living within a host gives rise to reduced genomes in obligate bacterial symbionts. Although this phenomenon can be explained by existing evolutionary models, its initiation is not well understood. Here, we describe the microbiome associated with eggs of the beetleLagria villosa, containing multiple bacterial symbionts related toBurkholderia gladioliincluding a reduced-genome symbiont thought to produce the defensive compound lagriamide. We find that the putative lagriamide producer is the only symbiont undergoing genome reduction, and that it has already lost most primary metabolism and DNA repair pathways. The horizontal acq…
On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain
2012
SCAND3 and KRBA2 are two mammalian proteins originally described as “cellular-integrases” due to sharing of a similar DDE-type integrase domain whose origin and relationship with other recombinases remain unclear. Here we perform phylogenetic analyses of 341 integrase/transposase sequences to reveal that the integrase domain of SCAND3 and KRBA2 derives from the same clade of GINGER2, a superfamily of cut-and-paste transposons widely distributed in insects and other protostomes, but seemingly absent or extinct in vertebrates. Finally, we integrate the results of phylogenetic analyses to the taxonomic distribution of SCAND3 and KRBA2 and their transposon relatives to discuss some of the proce…
The evolutionary origin of Xanthomonadales genomes and the nature of the horizontal gene transfer process.
2006
Determining the influence of horizontal gene transfer (HGT) on phylogenomic analyses and the retrieval of a tree of life is relevant for our understanding of microbial genome evolution. It is particularly difficult to differentiate between phylogenetic incongruence due to noise and that resulting from HGT. We have performed a large-scale, detailed evolutionary analysis of the different phylogenetic signals present in the genomes of Xanthomonadales, a group of Proteobacteria. We show that the presence of phylogenetic noise is not an obstacle to infer past and present HGTs during their evolution. The scenario derived from this analysis and other recently published reports reflect the confound…
Molecular evolution of P transposable elements in the Genus drosophila. II. The obscura species group.
1998
A phylogenetic analysis of P transposable elements in the Drosophila obscura species group is described. Multiple P sequences from each of 10 species were obtained using PCR primers that flank a conserved region of exon 2 of the transposase gene. In general, the P element phylogeny is congruent with the species phylogeny, indicating that the dominant mode of transmission has been vertical, from generation to generation. One manifestation of this is the distinction of P elements from the Old World obscura and subobscura subgroups from those of the New World affinis subgroup. However, the overall distribution of elements within the obscura species group is not congruent with the phylogenetic …
Properties of Halococcus salifodinae, an Isolate from Permian Rock Salt Deposits, Compared with Halococci from Surface Waters
2013
Halococcus salifodinae BIpT DSM 8989T, an extremely halophilic archaeal isolate from an Austrian salt deposit (Bad Ischl), whose origin was dated to the Permian period, was described in 1994. Subsequently, several strains of the species have been isolated, some from similar but geographically separated salt deposits. Hcc. salifodinae may be regarded as one of the most ancient culturable species which existed already about 250 million years ago. Since its habitat probably did not change during this long period, its properties were presumably not subjected to the needs of mutational adaptation. Hcc. salifodinae and other isolates from ancient deposits would be suitable candidates for testing …
Legionella pneumophila pangenome reveals strain-specific virulence factors
2010
Abstract Background Legionella pneumophila subsp. pneumophila is a gram-negative γ-Proteobacterium and the causative agent of Legionnaires' disease, a form of epidemic pneumonia. It has a water-related life cycle. In industrialized cities L. pneumophila is commonly encountered in refrigeration towers and water pipes. Infection is always via infected aerosols to humans. Although many efforts have been made to eradicate Legionella from buildings, it still contaminates the water systems. The town of Alcoy (Valencian Region, Spain) has had recurrent outbreaks since 1999. The strain "Alcoy 2300/99" is a particularly persistent and recurrent strain that was isolated during one of the most signifi…
Investigating effects in GNSS station coordinate time series
2014
The vertical and horizontal displacements of the Earth can be measured to a high degree of precision using GNSS. Time series of Latvian GNSS station positions of both the EUPOS®-Riga and LatPos networks have been developed at the Institute of Geodesy and Geoinformation of the University of Latvia (LU GGI). In this study the main focus is made on the noise analysis of the obtained time series and site displacement identification. The results of time series have been analysed and distinctive behaviour of EUPOS®-Riga and LatPos station coordinate changes have been identified. The possible dependences of GNSS station coordinate distribution on EPN station problems, seismic activity of some area…
Domestic Agencies in an Emergent European Executive Order
2011
Abstract This article poses the following question: who is in control of domestic agencies when they are handling domestic ‘EU affairs’ broadly speaking? The article demonstrates that domestic agencies are primarily steered by their parent ministry, being largely ‘single‐hatted’. This observation does not render ‘double‐hatted’ agencies implausible — as for example when domestic agencies practise EU legislation — generating a compound European executive order. The empirical analysis benefits from a large‐N elite survey among 1452 domestic agency officials. This article contests claims that the ‘agencification’ of domestic government systems as well as their involvement in an emergent Europe…
On the thermal instability in a horizontal rectangular porous channel heated from below by a constant flux
2014
Published version of an article in the journal: Journal of Physics: Conference Series. Also available from the publisher at: http://dx.doi.org/10.1088/1742-6596/501/1/012003 Open Access The onset of thermoconvective instability in a rectangular horizontal channel filled with a fluid-saturated porous medium is studied. The channel is heated from below with a constant flux. The top wall is maintained at a uniform constant temperature, while the lateral boundaries are permeable and perfectly conducting. The stability of the basic motionless state is analysed with respect to small-amplitude disturbances. The eigenvalue problem for the neutral stability condition is solved analytically for the n…