Search results for "Identification"
showing 10 items of 1600 documents
Evidence for spatiotemporal shift in demersal fishery management priority areas in the western Mediterranean
2022
14 pages, 10 figures, 2 tables, 1 appendix
GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data
2021
AbstractBackgroundThe interpretation of results from transcriptome profiling experiments via RNA sequencing (RNA-seq) can be a complex task, where the essential information is distributed among different tabular and list formats - normalized expression values, results from differential expression analysis, and results from functional enrichment analyses. A number of tools and databases are widely used for the purpose of identification of relevant functional patterns, yet often their contextualization within the data and results at hand is not straightforward, especially if these analytic components are not combined together efficiently.ResultsWe developed the GeneTonic software package, whi…
Molecular barcoding for central-eastern European Crioceris leaf-beetles (Coleoptera: Chrysomelidae)
2011
Abstract Among Crioceris leaf-beetles, the two most widespread species (Crioceris asparagi and C. duodecimpunctata) are serious invasive plant pests, while another two (C. quatuordecimpunctata and C. quinquepunctata) are rare species restricted to steppe-like habitats in Eurasia. The aim of the research was to check the genetic distinctiveness of these four species and develop barcodes for their molecular identification using the mitochondrial Cytochrome Oxidase I (COI) gene and two nuclear markers: Elongation Factor 1-α (EF1-α) and Internal Transcribed Spacer 1 (ITS1). The identification of each species was possible and reliable with the use of COI and ITS1 markers. EF1-α was omitted in an…
A new Northeast Asian Lynceus (Crustacea: Branchiopoda: Laevicaudata) with uniquely modified thoracopods and an evaluation of DNA barcoding for clam …
2020
A new species of smooth clam shrimp (Branchiopoda: Laevicaudata) from Mongolia and China is described here based on both morphological and genetic differences. The new species, Lynceus grossipedia n. sp., has unique features, including asymmetrically modified male thoracopods (left side thoracopods III-VI), male claspers “movable finger” (=endopod) with delicate setation, and broad, bicarinate male and female rostrum. Lynceus grossipedia n. sp. is compared with the genera Paralimnetis Gurney, 1931 and Lynceiopsis Daday, 1912 and a recently described Lynceus Müller, 1776 from China, also showing modified male thoracopods. Lynceus mandsuricus Daday, 1927 is declared nomen inquirendum. DNA bar…
Hybrid Schemes Based on Quantum Mechanics/Molecular Mechanics Simulations
2011
The development of characterization techniques, advanced synthesis methods, as well as molecular modeling has transformed the study of systems in a well-established research field. The current research challenges in biocatalysis and biotransformation evolve around enzyme discovery, design, and optimization. How can we find or create enzymes that catalyze important synthetic reactions, even reactions that may not exist in nature? What is the source of enzyme catalytic power? To answer these and other related questions, the standard strategies have evolved from trial-and-error methodologies based on chemical knowledge, accumulated experience, and common sense into a clearly multidisciplinary …
Modeling Natural Anti-Inflammatory Compounds by Molecular Topology
2011
One of the main pharmacological problems today in the treatment of chronic inflammation diseases consists of the fact that anti-inflammatory drugs usually exhibit side effects. The natural products offer a great hope in the identification of bioactive lead compounds and their development into drugs for treating inflammatory diseases. Computer-aided drug design has proved to be a very useful tool for discovering new drugs and, specifically, Molecular Topology has become a good technique for such a goal. A topological-mathematical model, obtained by linear discriminant analysis, has been developed for the search of new anti-inflammatory natural compounds. An external validation obtained with …
Measuring KS0K± interactions using Pb–Pb collisions at sNN=2.76 TeV
2019
We present the first measurements of femtoscopic correlations between the KS0 and K± particles in pp collisions at s=7 TeV measured by the ALICE experiment. The observed femtoscopic correlations are consistent with final-state interactions proceeding solely via the a0(980) resonance. The extracted kaon source radius and correlation strength parameters for KS0K− are found to be equal within the experimental uncertainties to those for KS0K+ . Results of the present study are compared with those from identical-kaon femtoscopic studies also performed with pp collisions at s=7 TeV by ALICE and with a KS0K± measurement in Pb–Pb collisions at sNN=2.76 TeV. Combined with the Pb–Pb results, our pp a…
Determination of the form factors for the decayB0→D*−l+νland of the CKM matrix element|Vcb|
2008
We present a combined measurement of the Cabibbo-Kobayashi-Maskawa matrix element vertical bar V-cb vertical bar and of the parameters rho(2), R-1(1), and R-2(1), which fully characterize the form factors for the B-0 -> D*(-)center dot(+)nu(center dot) decay in the framework of heavy-quark effective field theory. The results, based on a selected sample of about 52 800 B-0 -> D*(-)center dot(+)nu(center dot) decays, recorded by the BABAR detector, are rho(2)=1.157 +/- 0.094 +/- 0.027, R-1(1)=1.327 +/- 0.131 +/- 0.043, R-2(1)=0.859 +/- 0.077 +/- 0.021, and F(1)vertical bar V-cb vertical bar=(34.7 +/- 0.4 +/- 1.0)x10(-3). The first error is the statistical and the second is the systematic unce…
Measurement of the hadronic form factor inD0→K−e+νedecays
2007
We present a preliminary measurement of the q2 dependence of the D0 --> K- e+ nu_e decay rate. This rate is proportional to the hadronic form factor squared, specified by a single parameter. This is either the mass in the simple pole ansatz m_pole = (1.854 +- 0.016 +- 0.020) GeV/c2 or the scale in the modified pole ansatz alpha_pole = 0.43 +- 0.03 +- 0.04. The first error refers to the statistical, the second to the systematic uncertainty.
Search forB0→ϕ(K+π−)decays with largeK+π−invariant mass
2007
Motivated by the polarization anomaly in the B→ (1020)K*(892) decay, we extend our search for other K* final states in the decay B0→ (1020)K*0 with the K*0→K+π- invariant mass above 1.6 GeV. The final states considered include the K*(1680)0, K3*(1780)0, K4*(2045)0, and a Kπ spin-zero nonresonant component. We also search for B0→ D0 decay with the same final state. The analysis is based on a sample of about 384×106 BB pairs recorded with the BABAR detector. We place upper limits on the branching fractions B(B0→ K*(1680)0)<3.5×10-6, B(B0→ K3*(1780)0) <2.7×10-6, B(B0→ K4*(2045)0)<15.3×10-6, and B(B0→ D0)<11.7×10-6 at 90% C.L. The nonresonant contribution is consistent with the measurements in …