Search results for "Image segmentation"
showing 10 items of 234 documents
Normalization of T2W-MRI Prostate Images using Rician a priori
2016
International audience; Prostate cancer is reported to be the second most frequently diagnosed cancer of men in the world. In practise, diagnosis can be affected by multiple factors which reduces the chance to detect the potential lesions. In the last decades, new imaging techniques mainly based on MRI are developed in conjunction with Computer-Aided Diagnosis (CAD) systems to help radiologists for such diagnosis. CAD systems are usually designed as a sequential process consisting of four stages: pre-processing, segmentation, registration and classification. As a pre-processing, image normalization is a critical and important step of the chain in order to design a robust classifier and over…
VAMPIRE: Vessel assessment and measurement platform for images of the REtina
2011
We present VAMPIRE, a software application for efficient, semi-automatic quantification of retinal vessel properties with large collections of fundus camera images. VAMPIRE is also an international collaborative project of four image processing groups and five clinical centres. The system provides automatic detection of retinal landmarks (optic disc, vasculature), and quantifies key parameters used frequently in investigative studies: vessel width, vessel branching coefficients, and tortuosity. The ultimate vision is to make VAMPIRE available as a public tool, to support quantification and analysis of large collections of fundus camera images.
Multilabel segmentation of cancer cell culture on vascular structures with deep neural networks
2020
New increasingly complex in vitro cancer cell models are being developed. These new models seem to represent the cell behavior in vivo more accurately and have better physiological relevance than prior models. An efficient testing method for selecting the most optimal drug treatment does not exist to date. One proposed solution to the problem involves isolation of cancer cells from the patients' cancer tissue, after which they are exposed to potential drugs alone or in combinations to find the most optimal medication. To achieve this goal, methods that can efficiently quantify and analyze changes in tested cell are needed. Our study aimed to detect and segment cells and structures from canc…
Emergency Analysis: Multitask Learning with Deep Convolutional Neural Networks for Fire Emergency Scene Parsing
2021
In this paper, we introduce a novel application of using scene semantic image segmentation for fire emergency situation analysis. To analyse a fire emergency scene, we propose to use deep convolutional image segmentation networks to identify and classify objects in a scene based on their build material and their vulnerability to catch fire. We introduce our own fire emergency scene segmentation dataset for this purpose. It consists of real world images with objects annotated on the basis of their build material. We use state-of-the-art segmentation models: DeepLabv3, DeepLabv3+, PSPNet, FCN, SegNet and UNet to compare and evaluate their performance on the fire emergency scene parsing task. …
Quantification of the heterogeneity of prognostic cellular biomarkers in ewing sarcoma using automated image and random survival forest analysis
2014
Driven by genomic somatic variation, tumour tissues are typically heterogeneous, yet unbiased quantitative methods are rarely used to analyse heterogeneity at the protein level. Motivated by this problem, we developed automated image segmentation of images of multiple biomarkers in Ewing sarcoma to generate distributions of biomarkers between and within tumour cells. We further integrate high dimensional data with patient clinical outcomes utilising random survival forest (RSF) machine learning. Using material from cohorts of genetically diagnosed Ewing sarcoma with EWSR1 chromosomal translocations, confocal images of tissue microarrays were segmented with level sets and watershed algorithm…
Quantification of vesicles in differentiating human SH-SY5Y neuroblastoma cells by automated image analysis
2005
A new automated image analysis method for quantification of fluorescent dots is presented. This method facilitates counting the number of fluorescent puncta in specific locations of individual cells and also enables estimation of the number of cells by detecting the labeled nuclei. The method is here used for counting the AM1-43 labeled fluorescent puncta in human SH-SY5Y neuroblastoma cells induced to differentiate with all-trans retinoic acid (RA), and further stimulated with high potassium (K+) containing solution. The automated quantification results correlate well with the results obtained manually through visual inspection. The manual method has the disadvantage of being slow, labor-i…
Hyperspectral system for early detection of rottenness caused by Penicillium digitatum in mandarins
2008
Abstract Nowadays, the detection of fruit infected with Penicillium sp. fungi on packing lines is carried out manually under ultraviolet illumination. Ultraviolet sources induce visible fluorescence of essential oils, present in the skin of citrus and which are released by the action of fungi, thus increasing the contrast between sound and rotten skin. This work analyses a set of techniques aimed at detecting rotten citrus without the use of UV lighting. The techniques used include hyperspectral image acquisition, pre-processing and calibration, feature selection and segmentation using linear and non-linear methods for classification of fruits. Different methods such as correlation analysis…
Leveraging Uncertainty Estimates to Improve Segmentation Performance in Cardiac MR
2021
In medical image segmentation, several studies have used Bayesian neural networks to segment and quantify the uncertainty of the images. These studies show that there might be an increased epistemic uncertainty in areas where there are semantically and visually challenging pixels. The uncertain areas of the image can be of a great interest as they can possibly indicate the regions of incorrect segmentation. To leverage the uncertainty information, we propose a segmentation model that incorporates the uncertainty into its learning process. Firstly, we generate the uncertainty estimate (sample variance) using Monte-Carlo dropout during training. Then we incorporate it into the loss function t…
A class-separability-based method for multi/hyperspectral image color visualization
2010
In this paper, a new color visualization technique for multi- and hyperspectral images is proposed. This method is based on a maximization of the perceptual distance between the scene endmembers as well as natural constancy of the resulting images. The stretched CMF principle is used to transform reflectance into values in the CIE L*a*b* colorspace combined with an a priori known segmentation map for separability enhancement between classes. Boundaries are set in the a*b* subspace to balance the natural palette of colors in order to ease interpretation by a human expert. Convincing results on two different images are shown.
Image Colorization Method Using Texture Descriptors and ISLIC Segmentation
2017
We present a new colorization method to assign color to a grayscale image based on a reference color image using texture descriptors and Improved Simple Linear Iterative Clustering (ISLIC). Firstly, the pixels of images are classified using Support Vector Machine (SVM) according to texture descriptors, mean luminance, entropy, homogeneity, correlation, and local binary pattern (LBP) features. Then, the grayscale image and the color image are segmented into superpixels, which are obtained by ISLIC to produce more uniform and regularly shaped superpixels than those obtained by SLIC, and the classified images are further post-processed combined with superpixles for removing erroneous classific…