Search results for "Interaction"
showing 10 items of 5710 documents
Modeling in Microbial Ecology
2014
SPE IPM; International audience; The bases and the principles of modeling in microbial community ecology and biogeochemistry are presented and discussed. Several examples are given. Among them, the fermentation process is largely developed, thus demonstrating how the model allows determining the microbial population growth rate, the death rate, and the maintenance rate. More generally, these models have been used to increase the development of bioenergetic formulations which are presently used in biogeochemical models (Monod, Droop, DEB models). Different types of interactions (competition, predation, and virus–bacteria) are also developed. For each topic, a complete view of the models used…
Levofloxacin effect on erlotinib absorption. Evaluation of the interaction in undernutrition situations through population pharmacokinetic analysis i…
2017
The main objective of this study was to develop a pharmacokinetic model in order to describe the intestinal absorption of erlotinib in rat and to quantify the interaction of levofloxacin on this process in well- and under-nourished rats. Absorption studies were performed in male Wistar rats. Concentration-time profiles in proximal and distal intestine were analysed through non-linear mixed effect modelling using the NONMEM software version 7.3. Simulations were performed in order to explore the influence of covariates on the apparent absorption rate constant. A passive absorption and an active secretion process best-described erlotinib absorption from lumen to enterocyte. The developed mode…
Random forests, a novel approach for discrimination of fish populations using parasites as biological tags.
2008
Due to the complexity of host-parasite relationships, discrimination between fish populations using parasites as biological tags is difficult. This study introduces, to our knowledge for the first time, random forests (RF) as a new modelling technique in the application of parasite community data as biological markers for population assignment of fish. This novel approach is applied to a dataset with a complex structure comprising 763 parasite infracommunities in population samples of Atlantic cod, Gadus morhua, from the spawning/feeding areas in five regions in the North East Atlantic (Baltic, Celtic, Irish and North seas and Icelandic waters). The learning behaviour of RF is evaluated in …
GENETIC VARIABILITY AND DRIFT LOAD IN POPULATIONS OF AN AQUATIC SNAIL
2004
Population genetic theory predicts that in small populations, random genetic drift will fix and accumulate slightly deleterious mutations, resulting in reduced reproductive output. This genetic load due to random drift (i.e., drift load) can increase the extinction risk of small populations. We studied the relationship between genetic variability (indicator of past population size) and reproductive output in eight isolated, natural populations of the hermaphroditic snail Lymnaea stagnalis. In a common laboratory environment, snails from populations with the lowest genetic variability mature slower and have lower fecundity than snails from genetically more variable populations. This result s…
Digenean parasites of the bivalve mollusc Pisidium amnicum in a small river in eastern Finland
1998
The host-parasite relationship between digeneans and a semelparous population of the mollusc. Pisidium amnicum Müller in a small river in eastern Finland was studied during 1992/1993. The parasite prevalence of the population was high. The total prevalence was 45.6% in 1992 (n = 790) and 47.5% in 1993 (n = 160). The dominant digenean, Bunodera luciopercae (34.2% in 1992, 35.0% in 1993), had highest prevalences in July/August and in winter. Two other species, Palaeorchis crassus (7.8% in 1992, 7.5% in 1993) and Phyllodistomum elongatum (4.7% and 5.0%), were rare during the winter. The prevalence of B. luciopercae increased as clams aged, while the other species were most common in middle-siz…
Zn-Enhanced Asp-Rich Antimicrobial Peptides N-Terminal Coordination by Zn(II) and Cu(II), Which Distinguishes Cu(II) Binding to Different Peptides
2021
The antimicrobial activity of surfactant-associated anionic peptides (SAAPs), which are isolated from the ovine pulmonary surfactant and are selective against the ovine pathogen Mannheimia haemolytica, is strongly enhanced in the presence of Zn(II) ions. Both calorimetry and ITC measurements show that the unique Asp-only peptide SAAP3 (DDDDDDD) and its analogs SAAP2 (GDDDDDD) and SAAP6 (GADDDDD) have a similar micromolar affinity for Zn(II), which binds to the N-terminal amine and Asp carboxylates in a net entropically-driven process. All three peptides also bind Cu(II) with a net entropically-driven process but with higher affinity than they bind Zn(II) and coordination that involves the N…
Greatly enhanced intermolecular π-dimer formation of a porphyrin trimer radical trications through multiple π bonds.
2010
A trefoil-like porphyrin trimer linked by triphenylamine (TPA-TPZn(3)) was synthesized. A three-electron oxidation of TPA-TPZn(3) forms a radical trication (TPA-TPZn(3)(3+)), in which each porphyrin ring undergoes a one-electron oxidation. The radical trication TPA-TPZn(3)(3+) spontaneously dimerizes to afford (TPA-TPZn(3))(2)(6+) in CH(2)Cl(2) . The characteristic charge-resonance band due to the charge delocalization over the π system of (TPA-TPZn(3))(2)(6+) was observed in the NIR region. The initial oxidation potential of TPA-TPZn(3) is negatively shifted relative to that of the corresponding monomer porphyrin, which results from the stabilization of the oxidized state of TPA-TPZn(3) as…
Use of a running coupling in the NLO calculation of forward hadron production
2018
We address and solve a puzzle raised by a recent calculation [1] of the cross-section for particle production in proton-nucleus collisions to next-to-leading order: the numerical results show an un- reasonably large dependence upon the choice of a prescription for the QCD running coupling, which spoils the predictive power of the calculation. Specifically, the results obtained with a prescription formulated in the transverse coordinate space differ by one to two orders of magnitude from those obtained with a prescription in momentum space. We show that this discrepancy is an artefact of the interplay between the asymptotic freedom of QCD and the Fourier transform from coordinate space to mo…
Computation of conical intersections by using perturbation techniques
2005
Multiconfigurational second-order perturbation theory, both in its single-state multiconfigurational second-order perturbation theory (CASPT2) and multistate (MS-CASPT2) formulations, is used to search for minima on the crossing seams between different potential energy hypersurfaces of electronic states in several molecular systems. The performance of the procedures is tested and discussed, focusing on the problem of the nonorthogonality of the single-state perturbative solutions. In different cases the obtained structures and energy differences are compared with available complete active space self-consistent field and multireference configuration interaction solutions. Calculations on dif…
Study of the benzene⋅N2 intermolecular potential-energy surface
2003
The intermolecular potential-energy surface pertaining to the interaction between benzene and N2 is investigated theoretically and experimentally. Accurate intermolecular interaction energies are evaluated for the benzene–N2 van der Waals complex using the coupled cluster singles and doubles including connected triples [CCSD(T)] method and the aug-cc-pVDZ basis set extended with a set of 3s3p2d1f1g midbond functions. After fitting the energies to an analytic function, the intermolecular Schrödinger equation is solved to yield energies, rotational constants, and Raman-scattering coefficients for the lowest intermolecular levels of several benzene–N2 isotopomers. Experimentally, intermolecula…