Search results for "Isomer"

showing 10 items of 1308 documents

On the low-lying singlet excited states of styrene: a theoretical contribution

2000

The present contribution analyses the trans–cis photoisomerization mechanism of ethene and styrene on the singlet manifold. Within the framework of multiconfigurational second-order perturbation theory (CASPT2), the extended multistate approach (MS-CASPT2) is found to be flexible enough to describe energy hypersurfaces adiabatically. For ethene, torsion about the CC bond towards a perpendicular structure leads to a situation where the energy difference between the ground and the lowest excited state is still too large (2.5 eV) for efficient radiationless decay. However, the energy gap decreases to 0.4 eV when one of the methylene moieties is, in addition, pyramidalized from the twisted stru…

chemistry.chemical_compoundchemistryPhotoisomerizationBand gapExcited stateGeneral Physics and AstronomyTorsion (mechanics)Singlet statePhysical and Theoretical ChemistryAtomic physicsMethylenePotential energyStyrenePhysical Chemistry Chemical Physics
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l-Arabinose Conformers Adsorption on Ruthenium Surfaces: A DFT Study

2012

Adsorption of 5 L-arabinose tautomers – one acyclic and four cyclic (α and β, pyranose and furanose) species – on a ruthenium surface was studied as a precursor-process of the, nowadays more and more, industrially important sugar catalytic hydrogenation on metal surfaces in water medium. The study was mostly referred to a 37-atom metal catalyst fragment, even though border-effects on the adsorption processes were also checked employing a 61-atom metal fragment. In order to figure out conformational effects on the title process the tautomer flexibility was, at first, investigated by the genetic-algorithm based code Balloon, considering the conformational spaces of the different aquo tautomer…

chemistry.chemical_element02 engineering and technology010402 general chemistry01 natural sciencesMetalAdsorptionComputational chemistryPhysical and Theoretical Chemistryl-Arabinose species conformational analysis ruthenium catalysts adsorption energies DFT studiesConformational isomerismchemistry.chemical_classification021001 nanoscience & nanotechnologyFuranoseTautomer0104 chemical sciencesSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsRutheniumGeneral EnergyPyranosechemistrySettore CHIM/03 - Chimica Generale E Inorganicavisual_artvisual_art.visual_art_mediumDensity functional theory0210 nano-technologyThe Journal of Physical Chemistry C
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Palladium-based catalytic systems for the synthesis of conjugated enynes by Sonogashira reactions and related alkynylations

2007

Conjugated alkynes are recurring building blocks in natural products, a wide range of industrial intermediates, pharmaceuticals and agrochemicals, and molecular materials for optics and electronics. The palladium-catalyzed cross-coupling between sp(2)-hybridized carbon atoms of aryl, heteroaryl, and vinyl halides with sp-hybridized carbon atoms of terminal acetylenes is one of the most important developments in the field of alkyne chemistry over the past 50 years. The seminal work of the 1970s has initiated an intense search for more general and reliable reaction conditions. The interest in the catalytic activation of demanding substrates, the need to minimize the consumption of depletive r…

chemistry.chemical_elementSonogashira couplingAlkyneHalideConjugated systemHeterogeneous catalysis010402 general chemistryalkynes01 natural sciencesCatalysisCatalysischemistry.chemical_compound[ CHIM.CATA ] Chemical Sciences/CatalysisOrganometallic Compoundscross-couplingOrganic chemistryComputingMilieux_MISCELLANEOUSchemistry.chemical_classificationMolecular Structure010405 organic chemistryArylStereoisomerismGeneral ChemistryGeneral Medicine[CHIM.CATA]Chemical Sciences/Catalysissonogashira reactionspalladiumCombinatorial chemistry0104 chemical sciencesheterogeneous catalysischemistryCarbonPalladium
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The chemical composition of essential oil from Seseli tortuosum subsp. tortuosum and S. tortuosum subsp. maritimum (Apiaceae) aerial parts growing in…

2022

Seseli L. genus, belonging to the Apiaceae family, includes more than eighty taxa, mainly growing in Europe and Asia. Due to the several biological properties, species of this genus have been largely investigated, showing to be a rich source of coumarins, as well as, of essential oils with anti-inflammatory, antiviral, antifungal, cytotoxic, etc. properties. In the present study, the chemical composition of the essential oils from aerial parts of Sicilian accessions of Seseli tortuosum subsp. tortuosum and S. tortuosum subsp. maritimum were analysed by GC-MS. No one report has been previously published on the subsp. maritimum. The results showed the presence, in both oils, of large quantity…

chemotaxonomyOrganic Chemistrypinene isomers3-carenesylvestrenePlant Scienceessential oilsBiochemistryApiaceaeAnalytical Chemistry
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All-trans to 11-cis retinol isomerization in nuclear membrane fraction from bovine retinal pigment epithelium

1991

Abstract Isomerization of all-trans to 11-cis retinol has been studied in a membrane preparation from the nuclear fraction of bovine retinal pigment epithelium. When the nuclear membrane preparation deprived of endogenous retinoids is incubated with 4·5 μ m all-trans-retinol, the mean value calculated for the isomerase activity is 1·32 nmol 11-cis retinol formed hr−1 mg protein−1. Simultaneous formation of all-trans and 11-cis retinyl esters is also observed in the nuclear preparation. When assayed under the same experimental condition, RPE 150 000 g post-nuclear sediment shows about 70% of the isomerase activity found in the nuclear membrane fraction. Treatment of the nuclear membrane frac…

cis-trans-IsomerasesIsomerase activityNuclear EnvelopeDetergentsIsomeraseCellular and Molecular Neurosciencechemistry.chemical_compoundIsomerismChapsmedicineAnimalsBovine serum albuminNuclear membraneIsomerasesPigment Epithelium of EyeVitamin AChromatography High Pressure LiquidCell NucleusChromatographybiologyRetinolCholic AcidsSensory SystemsEnzyme assayOphthalmologyMembranemedicine.anatomical_structureSolubilityBiochemistrychemistrybiology.proteinCattleExperimental Eye Research
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Conformational investigation of α,β‐dehydropeptides. XV: N‐acetyl‐α,β‐dehydroamino acid N ′N ′‐dimethylamides: conformational properties from infrare…

2005

The FTIR spectra were analysed in the region of the nu(s)(N-H), AI(C=O) and nu(s)(Calpha=Cbeta) bands for a series of Ac-DeltaXaa-NMe2, where DeltaXaa = DeltaAla, (Z)-DeltaAbu, (Z)-DeltaLeu, (Z)-DeltaPhe and DeltaVal, to determine a predominant solution conformation of these alpha,beta-dehydropeptide-related molecules. Measurements were taken in CCl4, DCM and MeCN solutions. In the same way, spectra of saturated analogues Ac-Xaa-NMe2, where Xaa = Ala, Abu, Leu, Phe and Val, were investigated. To help interpret the spectroscopic results, conformational maps were calculated by the B3LYP/6-31+G** method. Also, the relative energies of all conformers of the dehydro compounds in vacuo as well as…

conformationStereochemistryProtein ConformationαPeptideamide/π(Ph) interactionBiochemistrySpectral linechemistry.chemical_compoundStructural BiologyAmideDrug DiscoverySpectroscopy Fourier Transform InfraredSide chainMoleculeC5 hydrogen bondFourier transform infrared spectroscopysolute/solvent interactionMolecular BiologyConformational isomerismβ‐dehydroamino acidsPharmacologychemistry.chemical_classificationChemistryHydrogen bondOrganic ChemistryGeneral MedicineModels TheoreticalAmidestheoretical IR frequenciesFTIR spectroscopyMolecular Medicinedensity functional theory calculationsPeptidesJournal of Peptide Science
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WRN protects against topo I but not topo II inhibitors by preventing DNA break formation

2008

The Werner syndrome helicase/3′-exonuclease (WRN) is a major component of the DNA repair and replication machinery. To analyze whether WRN is involved in the repair of topoisomerase-induced DNA damage we utilized U2-OS cells, in which WRN is stably down-regulated (wrn-kd), and the corresponding wild-type cells (wrn-wt). We show that cells not expressing WRN are hypersensitive to the toxic effect of the topoisomerase I inhibitor topotecan, but not to the topoisomerase II inhibitor etoposide. This was shown by mass survival assays, colony formation and induction of apoptosis. Upon topotecan treatment WRN deficient cells showed enhanced DNA replication inhibition and S-phase arrest, whereas af…

congenital hereditary and neonatal diseases and abnormalitiesWerner Syndrome HelicaseDNA RepairCell SurvivalDNA damageDNA repairBlotting WesternApoptosisBone NeoplasmsBiologyTopoisomerase-I InhibitorBiochemistryArticleWerner Syndrome HelicaseColony-Forming Units AssayHistonesTumor Cells CulturedmedicineHumansTopoisomerase II InhibitorsEnzyme InhibitorsRNA Small InterferingeducationMolecular BiologyEtoposideOsteosarcomaeducation.field_of_studyRecQ HelicasesTopoisomeraseCell CycleDNA Breaksnutritional and metabolic diseasesCell BiologyAntineoplastic Agents PhytogenicMolecular biologyDNA Topoisomerases Type IIExodeoxyribonucleasesBromodeoxyuridineDNA Topoisomerases Type IDNA Replication InhibitionCancer researchbiology.proteinTopoisomerase I InhibitorsTopoisomerase-II InhibitorTopotecanCamptothecinmedicine.drugDNA Repair
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Crystal structure of 1-(2-fluoro­benzo­yl)-2,7-di­meth­oxy­naphthalene

2014

The asymmetric unit of the compound contains two independent conformers. Each conformer is stacked along the a axis to form columns through van der Waals inter­actions only.

crystal structureCrystallographyAromaticityGeneral ChemistryCrystal structureDihedral angleCondensed Matter PhysicsRing (chemistry)Bioinformatics1-aroyl­naphthalene compoundResearch Communicationschemistry.chemical_compoundsymbols.namesakeCrystallographynon-coplanarly accumulated aromatic rings structurechemistryQD901-999symbolsMoleculeGeneral Materials Sciencevan der Waals forceConformational isomerism1-aroylnaphthalene compoundNaphthalenespatial organizationActa Crystallographica Section E: Structure Reports Online
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Crystal structure of thecisandtranspolymorphs of bis[μ-2-(1,3-benzothiazol-2-yl)phenolato]-κ3N,O:O;κ3O:N,O-bis[fac-tricarbonylrhenium(I)]

2017

The title dinuclear complex, [Re2(C13H8NOS)2(CO)6], crystallizes in two polymorphs where the 2-(1,3-benzothiazol-2-yl)phenolate ligands and two carbonyl groups aretrans- (I) orcis-arranged (II) with respect to the [Re2O2(CO)4] core. PolymorphsIandIIexhibit a crystallographically imposed centre of symmetry and a twofold rotation axis, respectively. The structures may be described as being formed by two octahedrally distorted metal-coordinating units fused through μ-oxido bridges, leading to edge-sharing dimers. The crystal packing is governed by C—H...O hydrogen-bonding interactions, forming chains parallel to thecaxis inIand a three-dimensional network inII.

crystal structureStereochemistrychemistry.chemical_elementGeneral ChemistryCrystal structureRhenium010402 general chemistry010403 inorganic & nuclear chemistryCondensed Matter Physics01 natural sciencespolymorphism0104 chemical sciencesrhenium tricarbonyl complexeslcsh:ChemistryCrystallographylcsh:QD1-999Polymorphism (materials science)chemistryGeneral Materials ScienceCis–trans isomerismActa Crystallographica Section E Crystallographic Communications
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Preparation of potentially porous, chiral organometallic materials through spontaneous resolution of pincer palladium conformers.

2013

Understanding the mechanism by which advanced materials assemble is essential for the design of new materials with desired properties. Here, we report a method to form chiral, potentially porous materials through spontaneous resolution of conformers of a PCP pincer palladium complex ({2,6-bis[(di-t-butylphosphino)methyl]phenyl}palladium(II)halide). The crystallisation is controlled by weak hydrogen bonding giving rise to chiral qtz-nets and channel structures, as shown by 16 such crystal structures for X = Cl and Br with various solvents like pentane and bromobutane. The fourth ligand (in addition to the pincer ligand) on palladium plays a crucial role; the chloride and the bromide primaril…

crystal structuretermoanalyysichemistry.chemical_elementCrystal structurekiderakenne010402 general chemistryjauhe röntgen diffraktioCrystallography X-Ray01 natural scienceshuokoiset materiaalitpalladium kompleksiInorganic ChemistryMolecular recognitionOrganometallic CompoundsMoleculePincer ligandta116palladium pincer complexes; hexagonal channels; self-assembly; weak interactionssingle crystal X-ray diffractionpowder X-ray diffractionorganometalliMolecular Structure010405 organic chemistryChemistryStereoisomerismpalladium complexyksikide röntgen diffraktio0104 chemical sciencesPincer movementChemistryCrystallographySelf-assemblyporous materialsPorosityPalladiumMonoclinic crystal systemPalladiumDalton transactions (Cambridge, England : 2003)
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