Search results for "Java"

showing 10 items of 425 documents

Potential of Crotalaria species as green manure crops for the management of pathogenic nematodes and beneficial mycorrhizal fungi

2004

On the basis of preliminary experiments, some Crotalaria species from Senegal were investigated to determine (1) their susceptibility to Meloidogyne javanica and M. incognita compared to a sensitive host (tomato), (2) their mycorrhizal and rhizobial responses, and (3) the effect of their cultivation on the mycorrhizal soil infectivity. The nematode invasion rates on Crotalaria spp. ranked from 0.17 to 7.17% and from 0.58 to 5.25%, respectively, for M. incognita and M. javanica, vs. 97% and 77% on tomato. Moreover, the inoculated J2 which invaded tomatoes developed into adult females, while those on Crotalaria spp. rarely developed beyond the third stage, confirming that all Crotalaria spp. …

0106 biological sciencesCROTALAIRESoil SciencePlant Science01 natural sciencesGreen manureSymbiosisBotanyMeloidogyne incognita[SDV.BV]Life Sciences [q-bio]/Vegetal Biology[SDV.BV] Life Sciences [q-bio]/Vegetal BiologyMycorrhizaComputingMilieux_MISCELLANEOUS2. Zero hungerbiologyCrotalariafungifood and beverages04 agricultural and veterinary sciences15. Life on landbiology.organism_classificationHorticultureShoot040103 agronomy & agriculture0401 agriculture forestry and fisheriesTerra incognitaMeloidogyne javanica010606 plant biology & botanyPlant and Soil
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Megymenum tuberculatum, a new species of Megymenini from Java and a review of distribution of M. brevicorne (Hemiptera: Heteroptera: Dinidoridae)

2020

Megymenum tuberculatum Hemala & Kocorek, sp. nov. (Hemiptera: Heteroptera: Dinidoridae: Megymeninae: Megymenini) from Java (Indonesia) is described, illustrated and compared with M. brevicorne (Fabricius, 1787). Although the description is based on only one female specimen, the differences in the morphology of head, pronotum, and spermatheca are significant. In addition, M. brevicorne is briefly redescribed and its distribution and biology reviewed along with its first record from Nepal. 

0106 biological sciencesMegymeniniInsectaJavaArthropoda010607 zoologyZoology010603 evolutionary biology01 natural sciencesHemipteraHeteropteraOriental RegionSpermathecaDinidoridaedistributionAnimaliaAnimalsMegymeninaeEcology Evolution Behavior and Systematicscomputer.programming_languageTaxonomynew speciesDinidoridaebiologyHeteropteraBiodiversitybiology.organism_classificationHemipteraMegymenumIndonesiaAnimal Science and ZoologyFemalecomputerZootaxa
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A new AR authoring tool using depth maps for industrial procedures

2013

Several augmented reality systems have been proposed for different target fields such as medical, cultural heritage and military. However, most of the current AR authoring tools are actually programming interfaces that are exclusively suitable for programmers. In this paper, we propose an AR authoring tool which provides advanced visual effect, such as occlusion or media contents. This tool allows non-programming users to develop low-cost AR applications, specially oriented to on-site assembly and maintenance/repair tasks. A new 3D edition interface is proposed, using photos and Kinect depth information to improve 3D scenes composition. In order to validate our AR authoring tool, two evalua…

0209 industrial biotechnologyGeneral Computer ScienceMultimediaInterface (Java)Computer scienceGeneral EngineeringProcess (computing)Word error rate020207 software engineering02 engineering and technologyOverlaycomputer.software_genreTask (computing)020901 industrial engineering & automationHuman–computer interaction0202 electrical engineering electronic engineering information engineeringAugmented reality systemsAugmented realitycomputerComputers in Industry
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Guava: phytochemical composition of a potential source of antioxidants for cosmetic and/or dermatological applications

2017

Made available in DSpace on 2018-11-28T14:21:45Z (GMT). No. of bitstreams: 0 Previous issue date: 2017-01-01. Added 1 bitstream(s) on 2019-10-09T18:26:25Z : No. of bitstreams: 1 S1984-82502017000200612.pdf: 803011 bytes, checksum: 199524e8d40cccb25490594ec61b3ed8 (MD5) Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) PADC-FCF-UNESP Fundação para o Desenvolvimento da UNESP (FUNDUNESP) Guava (Psidium guajava L.) is a native fruit of the American tropics with commercial applications for its taste, flavor and aroma. Numerous pharmacological uses have been described for it, such as the antiseptic effect of it…

0301 basic medicineAntioxidantP. guajava L./use in cosmeticsmedicine.medical_treatmentlcsh:RS1-44101 natural scienceslcsh:Pharmacy and materia medica03 medical and health scienceschemistry.chemical_compoundmedicineOrganic chemistryFood scienceGeneral Pharmacology Toxicology and PharmaceuticsP.guajava L./use in cosmeticsAromaFlavorPsidiumP. guajava L./antioxidant/chemical compositionABTSbiologyP.guajava L./antioxidant/chemical compositionP.guajava L./phytochemistrybiology.organism_classificationFree radical scavengerP.guajava L/chemical stabilityHigh Performance Liquid Chromatography0104 chemical sciences010404 medicinal & biomolecular chemistry030104 developmental biologychemistryP. guajava L./phytochemistryQuercetinKaempferolP. guajava L/chemical stability
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CellMap visualizes protein-protein interactions and subcellular localization

2018

Many tools visualize protein-protein interaction (PPI) networks. The tool introduced here, CellMap, adds one crucial novelty by visualizing PPI networks in the context of subcellular localization, i.e. the location in the cell or cellular component in which a PPI happens. Users can upload images of cells and define areas of interest against which PPIs for selected proteins are displayed (by default on a cartoon of a cell). Annotations of localization are provided by the user or through our in-house database. The visualizer and server are written in JavaScript, making CellMap easy to customize and to extend by researchers and developers.

0301 basic medicineBioinformaticssubcellular locationContext (language use)BiologyJavaScriptGeneral Biochemistry Genetics and Molecular BiologyChemical Biology of the CellProtein–protein interactionprotein-protein interaction03 medical and health sciencesUploadHuman–computer interactionGeneral Pharmacology Toxicology and Pharmaceuticscomputer.programming_languagebiological visualization030102 biochemistry & molecular biologyGeneral Immunology and MicrobiologySoftware Tool ArticleNoveltyArticlesGeneral MedicineSubcellular localizationddc:ComputingMethodologies_PATTERNRECOGNITION030104 developmental biologyNeurosciencecomputerF1000Research
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Reactome pathway analysis: a high-performance in-memory approach

2016

Reactome aims to provide bioinformatics tools for visualisation, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modelling, systems biology and education. Pathway analysis methods have a broad range of applications in physiological and biomedical research; one of the main problems, from the analysis methods performance point of view, is the constantly increasing size of the data samples. Here, we present a new high-performance in-memory implementation of the well-established over-representation analysis method. To achieve the target, the over-representation analysis method is divided in four different steps and, for each of them, specific data st…

0301 basic medicineData structuresDatabases FactualPathway analysisComputer scienceInterface (Java)Systems biologycomputer.software_genreGenomeBiochemistry03 medical and health sciences0302 clinical medicineStructural BiologyNucleic AcidsHumansMolecular BiologyApplied MathematicsComputational BiologyProteinsPathway analysisComputer Science ApplicationsTree (data structure)030104 developmental biology030220 oncology & carcinogenesisGraph (abstract data type)Data miningOver-representation analysiscomputerAlgorithmsSoftwareBMC Bioinformatics
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Trends of extended-spectrum β-lactamase-producing Escherichia coli sequence type 131 and its H30 subclone in a French hospital over a 15-year period.

2016

International audience; Sequence type 131 (ST131) is a predominant lineage among extraintestinal pathogenic Escherichia coli. It plays a major role in the worldwide dissemination of E. coli producing extended-spectrum β-lactamases (ESBLs). Here we describe the long-term epidemiology of this clonal group in a French university hospital, where the incidence of ESBL-producing E. coli has increased from 0.018 case per 1000 patient-days in the year 2000 to 0.50 case per 1000 patient-days in 2014. The first of the 141 ST131 isolates was recovered in 2006, and the ST131 clonal group accounted for 18.1% of total ESBL-producing E. coli over the whole period (2000-2014). Subclonal typing showed that …

0301 basic medicineMESH : Escherichia coliMESH : Retrospective StudiesMESH : Multilocus Sequence TypingMESH: beta-LactamasesMESH : GenotypeMultidrug resistancemedicine.disease_causeHospitals UniversityMESH: Genotype[ SDV.MP ] Life Sciences [q-bio]/Microbiology and ParasitologyPharmacology (medical)MESH: IncidenceMESH: Genetic VariationEscherichia coli InfectionsComputingMilieux_MISCELLANEOUSCross InfectionMolecular EpidemiologyExtraintestinal Pathogenic Escherichia coliMESH: Escherichia coliIncidenceIncidence (epidemiology)MESH : beta-LactamasesGeneral MedicinePFGEMESH : IncidenceElectrophoresis Gel Pulsed-Field3. Good healthInfectious DiseasesMESH: Electrophoresis Gel Pulsed-FieldMESH: Multilocus Sequence Typing[SDV.MP]Life Sciences [q-bio]/Microbiology and ParasitologyMESH : Escherichia coli Infections[SDE]Environmental SciencesFranceMESH : Cross InfectionMicrobiology (medical)clone (Java method)Lineage (genetic)GenotypeMESH : Molecular Epidemiology030106 microbiologyBiologybeta-LactamasesMicrobiology03 medical and health sciencesExtended-spectrum β-lactamaseMESH : Genetic VariationEscherichia coliPulsed-field gel electrophoresismedicineHumansMESH: Molecular EpidemiologyTypingMESH : FranceEscherichia coliMESH : Hospitals UniversityRetrospective StudiesMESH : Electrophoresis Gel Pulsed-FieldMESH: Escherichia coli InfectionsMESH: Hospitals UniversityMESH: HumansMESH : HumansGenetic VariationMESH: Cross InfectionMESH: Retrospective Studiesbacterial infections and mycosesMultiple drug resistanceMESH: FranceESBLMultilocus Sequence Typing
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A method for structure prediction of metal-ligand interfaces of hybrid nanoparticles

2019

Hybrid metal nanoparticles, consisting of a nano-crystalline metal core and a protecting shell of organic ligand molecules, have applications in diverse areas such as biolabeling, catalysis, nanomedicine, and solar energy. Despite a rapidly growing database of experimentally determined atom-precise nanoparticle structures and their properties, there has been no successful, systematic way to predict the atomistic structure of the metal-ligand interface. Here, we devise and validate a general method to predict the structure of the metal-ligand interface of ligand-stabilized gold and silver nanoparticles, based on information about local chemical environments of atoms in experimental data. In …

0301 basic medicineSteric effectsMaterials scienceInterface (Java)ScienceGeneral Physics and AstronomyNanoparticleNanotechnology02 engineering and technologyArticleGeneral Biochemistry Genetics and Molecular BiologySilver nanoparticleNanomaterials03 medical and health sciencesMoleculelcsh:ScienceMultidisciplinaryLigandQliganditGeneral Chemistrylaskennallinen kemia021001 nanoscience & nanotechnology030104 developmental biologyNanoparticlesAtomistic modelsNanomedicinelcsh:QMaterials chemistrynanohiukkaset0210 nano-technologyNature Communications
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T-Cell Lymphoma Clonality by Copy Number Variation Analysis of T-Cell Receptor Genes

2021

Simple Summary T-cells defend the human body from pathogenic invasion via specific recognition by T-cell receptors (TCRs). The TCR genes undergo recombination (rearrangement) in a myriad of possible ways to generate different TCRs that can recognize a wide diversity of foreign antigens. However, in patients with T-cell lymphoma (TCL), a particular T-cell becomes malignant and proliferates, resulting in a population of genetically identical cells with same TCR rearrangement pattern. To help diagnose patients with TCL, a polymerase chain reaction (PCR)-based assay is currently used to determine if neoplastic cells in patient samples are of T-cell origin and bear identical (monoclonal) TCR rea…

0301 basic medicineclone (Java method)Cancer ResearchclonalityBiologylcsh:RC254-282Article03 medical and health sciences0302 clinical medicinemedicineT-cell lymphomaT-cell receptorCopy-number variationcopy number variation analysisGeneWhole genome sequencingwhole genome sequencingT-cell receptorlcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogensmedicine.diseaseMolecular biology030104 developmental biologyOncology030220 oncology & carcinogenesisT-Cell Receptor GeneMonoclonalT-cell lymphomaClonality Copy number variation analysis T-cell lymphoma T-cell receptor Whole genome sequencingCancers
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Complete Genome Sequence of KPC-3- and CTX-M-15-Producing Klebsiella pneumoniae Sequence Type 307.

2016

ABSTRACT Klebsiella pneumoniae sequence type (ST) 307, carrying bla KPC-3 , bla CTX-M-15 , bla OXA-1 , aac(6′)-Ib-cr , and qnrB 1 genes, is replacing the predominant hyperepidemic ST258 clone in Italy. Whole-genome and complete plasmid sequencing of one ST307 strain was performed and new features were identified.

0301 basic medicineclone (Java method)KlebsiellaSettore MED/07 - Microbiologia E Microbiologia ClinicaKlebsiella pneumoniae030106 microbiology610 Medicine & healthBiologyBioinformatics03 medical and health sciencesPlasmidGeneticsProkaryotes610 Medicine & healthMolecular BiologyGeneSequence (medicine)GeneticsWhole genome sequencingStrain (chemistry)Klebsiella pneumoniae; PPC; ST 307ST 307biology.organism_classification3. Good healthKlebsiella pneumoniaePlasmids antimicrobial resistance; Klebisella pneumoniae; gene sequencyPPC
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