Search results for "MCO"

showing 10 items of 160 documents

Decreased temperature increases the expression of a disordered bacterial late embryogenesis abundant (LEA) protein that enhances natural transformati…

2021

Late embryogenesis abundant (LEA) proteins are important players in the management of responses to stressful conditions, such as drought, high salinity, and changes in temperature. Many LEA proteins do not have defined three-dimensional structures, so they are intrinsically disordered proteins (IDPs) and are often highly hydrophilic. Although LEA-like sequences have been identified in bacterial genomes, the functions of bacterial LEA proteins have been studied only recently. Sequence analysis of outer membrane interleukin receptor I (BilRI) from the oral pathogen Aggregatibacter actinomycetemcomitans indicated that it shared sequence similarity with group 3/3b/4 LEA proteins. Comprehensive …

Cold shock proteinEmbryonic DevelopmentInfectious and parasitic diseasesRC109-216Aggregatibacter actinomycetemcomitansbakteeritkylmänkestävyysNMR spectroscopyBacterial Proteinsnmr spectroscopyDNA transformation competencelate embryogenesis abundant proteinHumansNMR-spektroskopiaPlant Proteinsaggregatibacter actinomycetemcomitanscold shock proteinlate embryogenesisBiochemistry and Molecular BiologyTemperatureIntrinsically Disordered Proteinsabundant proteindna transformation competencelämpötilaproteiinitBiokemi och molekylärbiologiResearch ArticleResearch PaperVirulence
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Fast and Simple Approximation of the Diameter and Radius of a Graph

2006

The increasing amount of data to be processed by computers has led to the need for highly efficient algorithms for various computational problems. Moreover, the algorithms should be as simple as possible to be practically applicable. In this paper we propose a very simple approximation algorithm for finding the diameter and the radius of an undirected graph. The algorithm runs in $O(m\sqrt{n})$ time and gives an additive error of $O(\sqrt{n})$ for a graph with n vertices and m edges. Practical experiments show that the results of our algorithm are close to the optimum and compare favorably to the 2/3-approximation algorithm for the diameter problem by Aingworth et al [1].

CombinatoricsTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYGraph (abstract data type)Approximation algorithmAlgorithm engineeringRadiusComputational problemStrength of a graphDistanceMathematicsofComputing_DISCRETEMATHEMATICSAnalysis of algorithmsMathematics
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Cryptanalysis of Knapsack Cipher Using Ant Colony Optimization

2018

Ant Colony Optimization is a search metaheuristic inspired by the behavior of real ant colonies and shown their effectiveness, robustness to solve a wide variety of complex problems. In this paper, we present a novel Ant Colony Optimization (ACO) based attack for cryptanalysis of knapsack cipher algorithm. A Cipher-text only attack is used to discover the plaintext from the cipher-text. Moreover, our approach allows us to break knapsack cryptosystem in a minimum search space when compared with other techniques. Experimental results prove that ACO can be used as an effective tool to attack knapsack cipher.

Computer scienceAnt colony optimization algorithmsMathematicsofComputing_NUMERICALANALYSISMerkle–Hellman knapsack cryptosystemPlaintextData_CODINGANDINFORMATIONTHEORYAnt colonyComputingMethodologies_ARTIFICIALINTELLIGENCElaw.inventionKnapsack problemlawTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYCryptosystemCryptanalysisAlgorithmMetaheuristicSSRN Electronic Journal
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An abstract inf-sup problem inspired by limit analysis in perfect plasticity and related applications

2021

This paper is concerned with an abstract inf-sup problem generated by a bilinear Lagrangian and convex constraints. We study the conditions that guarantee no gap between the inf-sup and related sup-inf problems. The key assumption introduced in the paper generalizes the well-known Babuška–Brezzi condition. It is based on an inf-sup condition defined for convex cones in function spaces. We also apply a regularization method convenient for solving the inf-sup problem and derive a computable majorant of the critical (inf-sup) value, which can be used in a posteriori error analysis of numerical results. Results obtained for the abstract problem are applied to continuum mechanics. In particular…

Computer scienceApplied MathematicsRegular polygonDuality (optimization)Bilinear interpolationPlasticityRegularization (mathematics)Mathematics::Numerical Analysissymbols.namesakeLimit analysisTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYModeling and SimulationConvex optimizationsymbolsApplied mathematicsLagrangianMathematical Models and Methods in Applied Sciences
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R Code for Hausdorff and Simplex Dispersion Orderings in the 2D Case

2010

This paper proposes a software implementation using R of the Hausdorff and simplex dispersion orderings. A copy can be downloaded from http://www.uv.es/~ayala/software/fun-disp.R . The paper provides some examples using the functions exactHausdorff for the Hausdorff dispersion ordering and the function simplex for the simplex dispersion orderings. Some auxiliary functions are commented too.

Convex hullDiscrete mathematicsSimplexMultivariate random variableMathematicsofComputing_NUMERICALANALYSISHausdorff spaceAuxiliary functionFunction (mathematics)CombinatoricsTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYMathematics::Metric GeometryHausdorff measureStatistical dispersionMathematics
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Sphingomonas fennica sp. nov. and Sphingomonas haloaromaticamans sp. nov., outliers of the genus Sphingomonas.

2007

Bacterial isolates obtained from polychlorophenol-contaminated sites in Finland (strain K101T) and from a Dutch drinking water well (strain A175T) were characterized taxonomically. 16S rRNA gene sequence analysis, determination of DNA G+C content, physiological characterization, estimation of the ubiquinone and polar lipid patterns and fatty acid content revealed that strains K101T and A175T were similar to Sphingomonas wittichii RW1T but also showed pronounced differences. The DNA G+C contents of the two novel strains were 63.6 and 66.1 mol%, respectively. On the basis of these results, two novel species of the genus Sphingomonas are described, for which the names Sphingomonas haloaromatic…

DNA BacterialMolecular Sequence Datamedicine.disease_causeMicrobiologyDNA RibosomalSphingomonasMicrobiologySphingomonas haloaromaticamansTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYRNA Ribosomal 16SBotanymedicineEcology Evolution Behavior and SystematicsPhylogenySphingomonas fennicaBase CompositionbiologyGeneral Medicinebiology.organism_classification16S ribosomal RNASphingomonasGenus SphingomonasSphingomonas wittichiiTaxonomy (biology)BacteriaChlorophenols
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An Efficient Algorithm for the Generation of Z-Convex Polyominoes

2014

We present a characterization of Z-convex polyominoes in terms of pairs of suitable integer vectors. This lets us design an algorithm which generates all Z-convex polyominoes of size n in constant amortized time.

Discrete mathematicsAmortized analysisMathematics::CombinatoricsSettore INF/01 - InformaticaPolyominoEfficient algorithmRegular polygonComputer Science::Computational GeometryCharacterization (mathematics)CombinatoricsIntegerComputer Science::Discrete MathematicsTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYConstant (mathematics)TetrominoZ-convex polyominoes generation.Mathematics
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Approximate convex hull of affine iterated function system attractors

2012

International audience; In this paper, we present an algorithm to construct an approximate convex hull of the attractors of an affine iterated function system (IFS). We construct a sequence of convex hull approximations for any required precision using the self-similarity property of the attractor in order to optimize calculations. Due to the affine properties of IFS transformations, the number of points considered in the construction is reduced. The time complexity of our algorithm is a linear function of the number of iterations and the number of points in the output convex hull. The number of iterations and the execution time increases logarithmically with increasing accuracy. In additio…

Discrete mathematicsConvex hull0209 industrial biotechnologyGeneral MathematicsApplied Mathematics010102 general mathematicsProper convex functionConvex setMathematicsofComputing_GENERALGeneral Physics and AstronomyStatistical and Nonlinear Physics02 engineering and technology[ INFO.INFO-GR ] Computer Science [cs]/Graphics [cs.GR]01 natural sciences[INFO.INFO-GR]Computer Science [cs]/Graphics [cs.GR]020901 industrial engineering & automationAffine hullTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYConvex polytopeOutput-sensitive algorithmConvex combination0101 mathematicsConvex conjugateMathematics
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The computational complexity of the relative robust shortest path problem with interval data

2004

Abstract The paper deals with the relative robust shortest path problem in a directed arc weighted graph, where arc lengths are specified as intervals containing possible realizations of arc lengths. The complexity status of this problem has been unknown in the literature. We show that the problem is NP -hard.

Discrete mathematicsInformation Systems and ManagementGeneral Computer ScienceManagement Science and Operations ResearchIndustrial and Manufacturing EngineeringLongest path problemWidest path problemEuclidean shortest pathShortest Path Faster AlgorithmTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYModeling and SimulationShortest path problemK shortest path routingCanadian traveller problemDistanceMathematicsofComputing_DISCRETEMATHEMATICSMathematicsEuropean Journal of Operational Research
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Balls into non-uniform bins

2014

Balls-into-bins games for uniform bins are widely used to model randomized load balancing strategies. Recently, balls-into-bins games have been analysed under the assumption that the selection probabilities for bins are not uniformly distributed. These new models are motivated by properties of many peer-to-peer (P2P) networks, which are not able to perfectly balance the load over the bins. While previous evaluations try to find strategies for uniform bins under non-uniform bin selection probabilities, this paper investigates heterogeneous bins, where the "capacities" of the bins might differ significantly. We show that heterogeneous environments can even help to distribute the load more eve…

Discrete mathematicsMathematical optimizationComputational complexity theoryComputer Networks and CommunicationsComputer scienceDistributed computingAstrophysics::Cosmology and Extragalactic AstrophysicsPhysics::Data Analysis; Statistics and ProbabilityLoad balancing (computing)BinTheoretical Computer ScienceLoad managementCapacity planningArtificial IntelligenceHardware and ArchitectureTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYBounded functionBall (bearing)Resource allocationHardware_ARITHMETICANDLOGICSTRUCTURESGame theorySoftwareMathematicsMathematicsofComputing_DISCRETEMATHEMATICS2010 IEEE International Symposium on Parallel & Distributed Processing (IPDPS)
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