Search results for "MICROBIAL COMMUNITY"
showing 9 items of 69 documents
Nitrogen removal by microbial processes in aquatic systems
2012
A Noxious Weed Ambrosia artemisiifolia L. (Ragweed) as Sustainable Feedstock for Methane Production and Metals Immobilization
2023
Plants of the Ambrosia genus are invasive and cause many ecological problems, including the oppression of the growth of agricultural crops and native plants, land depletion, and the production of strong allergens. The use of weeds as a sustainable feedstock for biogas production, either methane or hydrogen, is a promising way to fulfill the energy needs of the current generation, eliminate the depletion of non-renewable carbon resources, and preserve the ecosystem degradation caused by invasive species impacts. A diversified microbial community was used as inoculum and Ambrosia artemisiifolia L. biomass as a substrate for anaerobic degradation and methane production. In this regard, the dev…
Disentangling the effects of methanogen community and environment on peatland greenhouse gas production by a reciprocal transplant experiment
2020
Northern peatlands consist of a mosaic of peatland types that vary spatially and temporally and differ in their methane (CH4) production. Microbial community composition and environment both potentially control the processes that release carbon from anoxic peat either as CH4 or carbon dioxide (CO2), a less potent greenhouse gas than CH4. However, the respective roles of these controls remain unclear, which prevents incorporating microbes in the predictions of peatland CH4 emissions. 2.Here, a reciprocal transplant experiment was carried out to separate the influences of microbial community and environment in CH4 and anaerobic CO2 production. Peat from an acidic Sphagnum bog and a sedge fen …
Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR
2011
Fungi constitute an important group in soil biological diversity and functioning. However, characterization and knowledge of fungal communities is hampered because few primer sets are available to quantify fungal abundance by real-time quantitative PCR (real-time Q-PCR). The aim in this study was to quantify fungal abundance in soils by incorporating, into a real-time Q-PCR using the SYBRGreen (R) method, a primer set already used to study the genetic structure of soil fungal communities. To satisfy the real-time Q-PCR requirements to enhance the accuracy and reproducibility of the detection technique, this study focused on the 18S rRNA gene conserved regions. These regions are little affec…
The influence of backslopping on lactic acid bacteria diversity in tarhana fermentation
2020
Tarhana is produced at batch systems in which the microbiota has changed accordingly to the microbial load from ingredients. In order to stabilize the microbiota, the effects of backslopping carried out under different temperature regimes (25 and 30 °C), pH (3.70 and 4.00) and inoculation rates (5, 10 and 15%) on lactic acid bacteria (LAB) diversity were determined in tarhana dough. LAB and Total Aerobic Mesophilic Bacteria (TAMB) numbers increased in all tarhana dough samples subjected to backslopping. Temperature and pH significantly affected the microbiological diversity of tarhana whereas the different inoculation rates did not. Tarhana dough showed complex tarhana microbiota following …
Artificial selection of microbial communities: the effect of diversity and the role of interspecific interactions
2021
In agriculture, the plants and animals that are bred come from long-term artificial selection procedures that aim at producing individuals with desirable traits. Such procedures can be applied at levels of biological organization higher than the individual such as the community level, which is of particular interest in the field of microbial community engineering. Indeed, microbial communities play key roles in agriculture but also in the environment, health and industry, and a growing body of literature shows promising results regarding the artificial selection of microbial communities for desirable functions. However, for artificial selection procedures at the community level to be effici…
Temperature effects explain continental scale distribution of cyanobacterial toxins
2018
Insight into how environmental change determines the production and distribution of cyanobacterial toxins is necessary for risk assessment. Management guidelines currently focus on hepatotoxins (microcystins). Increasing attention is given to other classes, such as neurotoxins (e.g., anatoxin-a) and cytotoxins (e.g., cylindrospermopsin) due to their potency. Most studies examine the relationship between individual toxin variants and environmental factors, such as nutrients, temperature and light. In summer 2015, we collected samples across Europe to investigate the effect of nutrient and temperature gradients on the variability of toxin production at a continental scale. Direct and indirect…
Plant-soil interactions in cold climate
2013
In-depth characterization of denitrifier communities across different soil ecosystems in the tundra
2022
Abstract Background In contrast to earlier assumptions, there is now mounting evidence for the role of tundra soils as important sources of the greenhouse gas nitrous oxide (N2O). However, the microorganisms involved in the cycling of N2O in this system remain largely uncharacterized. Since tundra soils are variable sources and sinks of N2O, we aimed at investigating differences in community structure across different soil ecosystems in the tundra. Results We analysed 1.4 Tb of metagenomic data from soils in northern Finland covering a range of ecosystems from dry upland soils to water-logged fens and obtained 796 manually binned and curated metagenome-assembled genomes (MAGs). We then sear…