Search results for "Marine and aquatic sciences"

showing 10 items of 57 documents

Complementary methods assessing short and long-term prey of a marine top predator ‒ Application to the grey seal-fishery conflict in the Baltic Sea.

2019

The growing grey seal (Halichoerus grypus) population in the Baltic Sea has created conflicts with local fisheries, comparable to similar emerging problems worldwide. Adequate information on the foraging habits is a requirement for responsible management of the seal population. We investigated the applicability of available dietary assessment methods by comparing morphological analysis and DNA metabarcoding of gut contents (short-term diet; n = 129/125 seals, respectively), and tissue chemical markers i.e. fatty acid (FA) profiles of blubber and stable isotopes (SIs) of liver and muscle (mid- or long-term diet; n = 108 seals for the FA and SI markers). The methods provided complementary inf…

Baltic StatespredatorsMolecular biologyTroutSeals EarlessMarine and Aquatic SciencesPredationSocial Sciencespredator populationMolecular biology assays and analysis techniquesFATTY-ACID-COMPOSITIONDIET COMPOSITIONPsychologyForagingpetokannatMammalssaaliseläimetSealsEcologyAnimal BehaviorNucleic acid analysisDatabase and informatics methodsFatty AcidsQSequence analysisREukaryotaTrophic InteractionsCommunity EcologyOsteichthyesVertebrates1181 Ecology evolutionary biologyMedicinepreyHALICHOERUS-GRYPUSDNA analysisFOOD-WEBResearch Articlegrey sealBioinformaticsECOLOGICAL REGIME SHIFTSScienceFisheriesMarine BiologyPHOCA-HISPIDA-BOTNICAfisherypetoeläimetGeneticsAnimalsGenetikMarine MammalsDNA sequence analysisEcosystemRINGED SEALSEkologiBehaviorSTABLE-ISOTOPE ANALYSISDNA-analyysiBLUBBEREcology and Environmental SciencesOrganismsBiology and Life SciencesCARBON ISOTOPESResearch and analysis methodskalatalousMolecular biology techniquesFishAmniotesEarth Sciences1182 Biochemistry cell and molecular biologyhalli (hylkeet)ZoologyPLoS ONE
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Mitochondrial DNA Regionalism and Historical Demography in the Extant Populations of Chirocephalus kerkyrensis (Branchiopoda: Anostraca)

2012

BackgroundMediterranean temporary water bodies are important reservoirs of biodiversity and host a unique assemblage of diapausing aquatic invertebrates. These environments are currently vanishing because of increasing human pressure. Chirocephalus kerkyrensis is a fairy shrimp typical of temporary water bodies in Mediterranean plain forests and has undergone a substantial decline in number of populations in recent years due to habitat loss. We assessed patterns of genetic connectivity and phylogeographic history in the seven extant populations of the species from Albania, Corfu Is. (Greece), Southern and Central Italy.Methodology/principal findingsWe analyzed sequence variation at two mito…

Base Pair MismatchScienceMolecular Sequence DataPopulation DynamicsBiodiversitySettore BIO/05 - ZoologiaPopulation geneticsBranchiopodaMarine and Aquatic SciencesMarine BiologyChirocephalus kerkyrensis Anostraca Phylogeography Mediterranean Temporary PondsExtinction BiologicalDNA MitochondrialHaplogroupGene flowLimnologyAnimalsCluster AnalysisEvolutionary SystematicsBiologyPhylogenyInstitut für Biochemie und BiologieDemographyEvolutionary BiologyMultidisciplinarybiologyEcologyPopulation BiologyEcologyMediterranean RegionQRGenetic VariationPaleontologybiology.organism_classificationPhylogeographyPhylogeographyHabitat destructionHaplotypesAnostracaEarth SciencesMedicineAnostracaZoologyResearch Article
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Temperature-induced microstructural changes in shells of laboratory-grown Arctica islandica (Bivalvia).

2021

Bivalve shells are increasingly used as archives for high-resolution paleoclimate analyses. However, there is still an urgent need for quantitative temperature proxies that work without knowledge of the water chemistry–as is required for δ18O-based paleothermometry–and can better withstand diagenetic overprint. Recently, microstructural properties have been identified as a potential candidate fulfilling these requirements. So far, only few different microstructure categories (nacreous, prismatic and crossed-lamellar) of some short-lived species have been studied in detail, and in all such studies, the size and/or shape of individual biomineral units was found to increase with water temperat…

BiomineralizationAtmospheric Science010504 meteorology & atmospheric sciencesPhysiologyScanning electron microscopeArctica islandica010502 geochemistry & geophysicsBiochemistry01 natural sciencesMachine LearningMaterials PhysicsPhase (matter)Image Processing Computer-AssistedElectron MicroscopyMicrostructureClimatologyMicroscopyMultidisciplinaryAgricultural and Biological Sciences(all)biologyPhysicsQTemperatureREukaryotaSoftware EngineeringMicrostructureAdaptation PhysiologicalDiagenesisPhysical SciencesEngineering and TechnologyMedicineScanning Electron MicroscopyPaleotemperaturePorosityResearch ArticleBivalvesComputer and Information SciencesMaterials scienceBaltic SeaImaging TechniquesScienceMaterials ScienceShell (structure)MineralogyResearch and Analysis MethodsComputer SoftwareAnimal ShellsBodies of waterAnimalsPaleoclimatologyGeneralArctica islandica0105 earth and related environmental sciencesBiochemistry Genetics and Molecular Biology(all)MorphometryOrganismsPaleontologyWaterBiology and Life SciencesMolluscsbiology.organism_classificationBivalviaInvertebratesBivalviaMarine and aquatic sciencesEarth sciencesMicroscopy Electron ScanningLaboratoriesPhysiological ProcessesZoologySoftwareGenetics and Molecular Biology(all)BiomineralizationPLoS ONE
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Modulation of the growth and metabolic response of cyanobacteria by the multifaceted activity of naringenin

2017

The interactions between the plant-derived bioflavonoid, naringenin, and prokaryotic microalgae representatives (cyanobacteria), were investigated with respect to its influence on the growth and metabolic response of these microorganisms. To achieve reliable results, the growth of cyanobacteria was determined based on measurements of chlorophyll content, morphological changes were assessed through microscopic observations, and the chemical response of cells was determined using liquid and gas chromatography (HPLC; GC-FID). The results show that micromolar levels of naringenin stimulated the growth of cyanobacteria. Increased growth was observed for halophilic strains at naringenin concentra…

ChlorophyllPigments0301 basic medicineCyanobacteriaNaringeninExopolysaccharidesChloroplastsMicroorganismCellGlycobiologyMarine and Aquatic Scienceslcsh:MedicineFresh WaterPlant ScienceBiochemistrychemistry.chemical_compoundElectron MicroscopyNostoclcsh:ScienceLiquid ChromatographyMicroscopyMultidisciplinarybiologyChemistryChromatographic Techniquesfood and beveragesHalophilemedicine.anatomical_structureBiochemistryFlavanonesPhysical SciencesScanning Electron MicroscopyCellular Structures and OrganellesCellular TypesResearch ArticleFreshwater EnvironmentsChromatography GasPlant Cell BiologyMaterials Science030106 microbiologyCyanobacteriaResearch and Analysis MethodsCell wallExcretion03 medical and health sciencesPolysaccharidesPlant CellsmedicineMaterials by AttributeBacteriaOrganic PigmentsEcology and Environmental Scienceslcsh:ROrganismsBiology and Life SciencesAquatic EnvironmentsCell Biologybiology.organism_classificationAnabaenaHigh Performance Liquid Chromatography030104 developmental biologyEarth Scienceslcsh:QBacteriaChromatography LiquidNostoc muscorumPLOS ONE
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Abundance and Distribution Patterns of Thunnus albacares in Isla del Coco National Park through Predictive Habitat Suitability Models

2016

Information on the distribution and habitat preferences of ecologically and commercially important species is essential for their management and protection. This is especially important as climate change, pollution, and overfishing change the structure and functioning of pelagic ecosystems. In this study, we used Bayesian hierarchical spatial-temporal models to map the Essential Fish Habitats of the Yellowfin tuna (Thunnus albacares) in the waters around Isla del Coco National Park, Pacific Costa Rica, based on independent underwater observations from 1993 to 2013. We assessed if observed changes in the distribution and abundance of this species are related with habitat characteristics, fis…

CocosChlorophyll0106 biological sciences010504 meteorology & atmospheric scienceslcsh:MedicineOceanography01 natural sciencesGeographical LocationsAbundanceAbundance (ecology)OceansZoologíaIsla del Coco National Parklcsh:ScienceClimatologyMultidisciplinarybiologyEcologyNational parkFishesTemperatureAgricultureSurface TemperatureGeographyHabitatOsteichthyesVertebratesPhysical SciencesMarine GeologyThunnusResearch ArticleCosta RicaYellowfin tunaSurface PropertiesClimate ChangeOceaniaMaterials ScienceMaterial PropertiesFisheriesSede Central IEOAnimalsAtmospheric scienceWeatherEcosystem0105 earth and related environmental sciencesOverfishingTunaChlorophyll A010604 marine biology & hydrobiologylcsh:REl Ni単o-Southern OscillationOrganismsBiology and Life SciencesCentral AmericaBayes TheoremPelagic zoneBodies of Waterbiology.organism_classificationThunnus albacaresMarine and aquatic sciencesFisheryEarth sciencesPeople and PlacesNorth AmericaGeographic Information Systemslcsh:QTunaAnimal DistributionPLOS ONE
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Climate change and genetic structure of leading edge and rear end populations in a northwards shifting marine fish species, the corkwing wrasse (Symp…

2013

Published version of an article in the journal:PLoS ONE. Also available from the Public Library of Science: http://dx.doi.org/10.1371/journal.pone.0067492 Open Access One mechanism by which marine organisms may respond to climate shifts is range shifts. The corkwing wrasse (Symphodus melops) is a temperate fish species, inhabiting the coasts of Europe, that show strong indications of current as well as historical (ice-age) range shifts towards the north. Nine neutral microsatellite DNA markers were screened to study genetic signatures and spatial population structure over the entire geographic and thermal gradient of the species from Portugal to Norway. A major genetic break (FST  = 0.159 a…

Gene FlowLeading edgeVDP::Mathematics and natural science: 400::Geosciences: 450::Meteorology: 453Climate Changelcsh:MedicineClimate changePopulation geneticsMarine and Aquatic SciencesMarine BiologyBioinformaticsOceanographyDNA MitochondrialOceansVDP::Agriculture and fishery disciplines: 900::Fisheries science: 920::Fish health: 923GeneticsAnimalslcsh:ScienceBiologyVDP::Agriculture and fishery disciplines: 900::Fisheries science: 920Evolutionary BiologyMultidisciplinarybiologyEcologyPopulation Biologylcsh:RMarine EcologyFishesMarine fishGenetic Variationbiology.organism_classificationSymphodusFisheryGenetics PopulationGenetic structureEarth Scienceslcsh:QNorth SeaMarine GeologyZoologyCorkwing wrasseIchthyologyCoastal EcologyResearch ArticleMicrosatellite Repeats
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Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the l…

2018

22 pages; International audience; One of the most relevant characteristics of the extant Southern Ocean fauna is its resiliency to survive glacial processes of the Quaternary. These climatic events produced catastrophic habitat reductions and forced some marine benthic species to move, adapt or go extinct. The marine benthic species inhabiting the Antarctic upper continental shelf faced the Quaternary glaciations with different strategies that drastically modified population sizes and thus affected the amount and distribution of intraspecific genetic variation. Here we present new genetic information for the most conspicuous regular sea urchin of the Antarctic continental shelf, Sterechinus…

Gene FlowTopographyHeredityEcological MetricsPopulation geneticsOceans and SeasGenetic locilcsh:MedicineDNA MitochondrialGeographical LocationsBodies of waterOceansGeneticsAnimalslcsh:ScienceEcosystemSpecies diversityPopulation DensityIslandsEvolutionary BiologyLandforms[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]Population BiologyGeographyEcologylcsh:REcology and Environmental SciencesBiology and Life SciencesGeomorphologyBayes TheoremMarine and aquatic sciencesGenetic MappingPhylogeographyAntarctic OceanGenetics PopulationBiogeographyHaplotypesSea UrchinsPeople and PlacesEarth SciencesAntarcticalcsh:QResearch Article
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Geosphere-biosphere interactions in bio-activity volcanic lakes: Evidences from Hule and Rìo Cuarto (Costa Rica)

2014

Hule and R ́ıo Cuarto are maar lakes located 11 and 18 km N of Poa ́s volcano along a 27 km long fracture zone, in the Central Volcanic Range of Costa Rica. Both lakes are characterized by a stable thermic and chemical stratification and recently they were affected by fish killing events likely related to the uprising of deep anoxic waters to the surface caused by rollover phenomena. The vertical profiles of temperature, pH, redox potential, chemical and isotopic compositions of water and dissolved gases, as well as prokaryotic diversity estimated by DNA fingerprinting and massive 16S rRNA pyrosequencing along the water column of the two lakes, have highlighted that different bio-geochemica…

Genetics and Molecular Biology (all)Aerobic bacterialcsh:MedicineMarine and Aquatic Sciencestrace elementsSettore BIO/19 - Microbiologia GeneraleBiochemistryWater columnBiochemistry Genetics and Molecular Biology (all); Agricultural and Biological Sciences (all)RNA Ribosomal 16SLimnologylcsh:SciencePhylogenyTotal organic carbonMultidisciplinarygeography.geographical_feature_categoryEcologyBiosphereBiogeochemistryHydrogen-Ion ConcentrationAnoxic watersMaarChemistryOceanographyPhysical SciencesMethaneOxidation-ReductionResearch ArticleFreshwater EnvironmentsCosta RicaSettore BIO/07 - EcologiaVolcanic EruptionsCarbon CycleHydrothermal VentsEnvironmental ChemistryMolecular Biology TechniquesSequencing TechniquesMolecular BiologygeographyVolcanic lakeBacterialcsh:RHigh Throughput SequencingEcology and Environmental SciencesOrganismsChemical CompoundsBiology and Life SciencesAquatic EnvironmentsCarbon DioxideArchaeaDNA FingerprintingOxygenLakesGeochemistryVolcanoAgricultural and Biological Sciences (all)Settore GEO/08 - Geochimica e VulcanologiaEarth SciencesEnvironmental sciencelcsh:QSurface water
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Genome-Wide SNP-Genotyping Array to Study the Evolution of the Human Pathogen Vibrio vulnificus Biotype 3

2014

Vibrio vulnificus is an aquatic bacterium and an important human pathogen. Strains Of V. vulnificus are classified into three different biotypes. The newly emerged biotype 3 has been found to be clonal and restricted to Israel. In the family Vibrionaceae , horizontal gene transfer is the main mechanism responsible for the emergence of new pathogen groups. To better understand the evolution of the bacterium, and in particular to trace the evolution of biotype 3, we performed genome-wide SNP genotyping of 254 clinical and environmental V. vulnificus isolates with worldwide distribution recovered over a 30-year period, representing all phylogeny groups. A custom single-nucleotide polymorphism …

GenotypingGenome evolutionlcsh:MedicineMarine and Aquatic SciencesGenome ViralVibrio vulnificusPolymorphism Single NucleotideMicrobiologyGenomeEvolution MolecularMolecular GeneticsGeneticslcsh:ScienceMolecular Biology TechniquesCladeVibrio vulnificusMolecular BiologyGenotypingComparative genomicsGeneticsEvolutionary BiologyBacterial EvolutionMultidisciplinarybiologyPhylogenetic treelcsh:REcology and Environmental SciencesBiology and Life SciencesAquatic Environmentsbiology.organism_classificationOrganismal EvolutionSNP genotypingHaplotypesBacteris patògensMicrobial EvolutionEarth Scienceslcsh:QPopulation GeneticsResearch ArticlePLoS ONE
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Jellyfish Stings Trigger Gill Disorders and Increased Mortality in Farmed Sparus aurata (Linnaeus, 1758) in the Mediterranean Sea

2016

11 pages, 4 figures

Gills0106 biological sciences0301 basic medicineGillFish mortalityFish DiseaseJellyfishScyphozoaRespiratory SystemMarine and Aquatic Scienceslcsh:MedicineAquaculture01 natural sciencesCell FusionBites and StingFish DiseasesAquacultureOceansMedicine and Health SciencesMarine FishBites and StingsAnimal Anatomylcsh:ScienceMultidisciplinarybiologyPhysicsFishesClassical MechanicsAgricultureSurvival RateVertebratesPhysical SciencesAnatomyAnimals Aquaculture Bites and Stings Fish Diseases Gills Mediterranean Sea Scyphozoa Sea Bream Survival Rate TunisiaResearch ArticleSettore BIO/07 - EcologiaCell PhysiologyTunisiaFish BiologyFish farmingMarine BiologyCnidaria03 medical and health sciencesFish physiologyBodies of waterbiology.animalFish PhysiologyMediterranean SeaAnimalsAnimal Physiology14. Life underwaterDamage MechanicsAnimalbusiness.industry010604 marine biology & hydrobiologylcsh:ROrganismsBiology and Life SciencesCell BiologyScyphozoabiology.organism_classificationPelagia noctilucaInvertebratesVertebrate PhysiologySea BreamFishery030104 developmental biologyAquatic Respiratory Anatomy13. Climate actionEarth SciencesGilllcsh:QJellyfishbusinessZoologyPLOS ONE
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