Search results for "Matrices"

showing 10 items of 155 documents

Paradigm of tunable clustering using Binarization of Consensus Partition Matrices (Bi-CoPaM) for gene discovery

2013

Copyright @ 2013 Abu-Jamous et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Clustering analysis has a growing role in the study of co-expressed genes for gene discovery. Conventional binary and fuzzy clustering do not embrace the biological reality that some genes may be irrelevant for a problem and not be assigned to a cluster, while other genes may participate in several biological functions and should simultaneously belong to multiple clusters. Also, these algorithms cannot generate tight cluster…

Fuzzy clusteringMicroarraysSingle-linkage clusteringGenes FungalGene Expressionlcsh:MedicineBiologyFuzzy logicSet (abstract data type)Molecular GeneticsEngineeringGenome Analysis ToolsYeastsConsensus clusteringMolecular Cell BiologyDatabases GeneticCluster (physics)GeneticsCluster AnalysisBinarization of Consensus Partition Matrices (Bi-CoPaM)Cluster analysislcsh:ScienceGene clusteringBiologyOligonucleotide Array Sequence AnalysisGeneticsMultidisciplinarybusiness.industryCell Cycleta111lcsh:RComputational BiologyPattern recognitionGenomicsgene discoveryPartition (database)tunable binarization techniquesComputingMethodologies_PATTERNRECOGNITIONGenesCell cyclesSignal Processinglcsh:QArtificial intelligencebusinessGenomic Signal ProcessingAlgorithmsResearch Articleclustering
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Circular law for sparse random regular digraphs

2020

Fix a constant $C\geq 1$ and let $d=d(n)$ satisfy $d\leq \ln^{C} n$ for every large integer $n$. Denote by $A_n$ the adjacency matrix of a uniform random directed $d$-regular graph on $n$ vertices. We show that, as long as $d\to\infty$ with $n$, the empirical spectral distribution of appropriately rescaled matrix $A_n$ converges weakly in probability to the circular law. This result, together with an earlier work of Cook, completely settles the problem of weak convergence of the empirical distribution in directed $d$-regular setting with the degree tending to infinity. As a crucial element of our proof, we develop a technique of bounding intermediate singular values of $A_n$ based on studyi…

General Mathematicsregular graphsrandom matrices01 natural sciencesCombinatoricsMatrix (mathematics)FOS: Mathematics60B20 15B52 46B06 05C80Adjacency matrix0101 mathematicsrandom graphsMathematicsRandom graphlogarithmic potentialWeak convergenceDegree (graph theory)sparse matricesApplied MathematicsProbability (math.PR)010102 general mathematicsCircular lawSingular valueCircular lawintermediate singular valuesRandom matrixMathematics - ProbabilityJournal of the European Mathematical Society
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Role of the Netrin-like Domain of Procollagen C-Proteinase Enhancer-1 in the Control of Metalloproteinase Activity

2010

The netrin-like (NTR) domain is a feature of several extracellular proteins, most notably the N-terminal domain of tissue inhibitors of metalloproteinases (TIMPs), where it functions as a strong inhibitor of matrix metalloproteinases and some other members of the metzincin superfamily. The presence of a C-terminal NTR domain in procollagen C-proteinase enhancers (PCPEs), proteins that stimulate the activity of astacin-like tolloid proteinases, raises the possibility that this might also have inhibitory activity. Here we show that both long and short forms of the PCPE-1 NTR domain, the latter beginning at the N-terminal cysteine known to be critical for TIMP activity, show no inhibition, at …

Glycobiology and Extracellular MatricesMatrix metalloproteinaseBiochemistryBONE MORPHOGENETIC PROTEIN-1AdamalysinFIBRILLAR PROCOLLAGENSTolloid ProteinaseExtracellular Matrix Proteins0303 health sciencesADAMTSFRIZZLED-RELATED PROTEINS030302 biochemistry & molecular biologyTissue Inhibitor of Metalloproteinases11 Medical And Health SciencesALPHA-CONVERTING-ENZYMEI PROCOLLAGENADAM ProteinsExtracellular MatrixPLASMINOGEN ACTIVATIONBiochemistryCollagen03 Chemical SciencesLife Sciences & BiomedicineProcollagenBiochemistry & Molecular BiologyTERMINAL DOMAINTolloid-Like MetalloproteinasesADAMTSBiologyBone morphogenetic protein 1Cell Line03 medical and health sciencesDisintegrinHumansHUMAN TISSUE INHIBITORMatrix MetalloproteinaseMolecular BiologyGlycoproteins030304 developmental biologyThrombospondinScience & TechnologyHeparinADAMCell Biology06 Biological SciencesMATRIX-METALLOPROTEINASESProtein Structure TertiaryADAM ProteinsProcollagen peptidaseSULFATED GLYCOSAMINOGLYCANSEnzymologybiology.proteinJournal of Biological Chemistry
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A fast BEM model for 3D elastic structures with attached piezoelectric sensors

2009

A fast boundary element model for the analysis of three-dimensional solids with cracks and adhesively bonded piezoelectric patches, used as strain sensors, is presented. The piezoelectric sensors, as well as the adhesive layer, are modeled using a 3D state space finite element approach. The piezoelectric patch model is formulated taking into account the full electro-mechanical coupling and embodying the suitable boundary conditions and it is eventually expressed in terms of the interface variables, to allow a straightforward coupling with the underlying host structure, which is modeled through a 3D dual boundary element method, for accurate analysis of cracks. The technique is computational…

Hierarchical matricesSettore ING-IND/04 - Costruzioni E Strutture AerospazialiFast BEM solverPiezoelectric sensorDBEM
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Models with three Higgs doublets in the triplet representations of A4 or S4

2013

We consider the quark sector of theories containing three scalar SU(2)(L) doublets in the triplet representation of A(4) (or S-4) and three generations of quarks in arbitrary A(4) (or S-4) representations. We show that for all possible choices of quark field representations and for all possible alignments of the Higgs vacuum expectation values that can constitute global minima of the scalar potential, it is not possible to obtain simultaneously nonvanishing quark masses and a nonvanishing CP-violating phase in the Cabibbo-Kobayashi-Maskawa quark mixing matrix. As a result, in this minimal form, models with three scalar fields in the triplet representation of A(4) or S-4 cannot be extended t…

High Energy Physics - PhenomenologyHigh Energy Physics - Phenomenology (hep-ph)High Energy Physics::LatticeHigh Energy Physics::PhenomenologyFOS: Physical sciencesFísicaDiscrete SymmetriesHigh Energy Physics::ExperimentMaximal CP nonconservationQuark mass matrices
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Challenges in truncating the hierarchy of time-dependent reduced density matrices equations

2012

In this work, we analyze the Born, Bogoliubov, Green, Kirkwood, and Yvon (BBGKY) hierarchy of equations for describing the full time evolution of a many-body fermionic system in terms of its reduced density matrices (at all orders). We provide an exhaustive study of the challenges and open problems linked to the truncation of such a hierarchy of equations to make them practically applicable. We restrict our analysis to the coupled evolution of the one- and two-body reduced density matrices, where higher-order correlation effects are embodied into the approximation used to close the equations. We prove that within this approach, the number of electrons and total energy are conserved, regardl…

Hubbard modelta114PhysicsComplex systemdensity matricesmany-body fermionic systemElectronCondensed Matter PhysicsBBGKY hierarchy01 natural sciencesInstability010305 fluids & plasmasElectronic Optical and Magnetic MaterialsequationsQuantum mechanics0103 physical sciencesCompatibility (mechanics)Strongly correlated materialStatistical physics010306 general physicsMathematicsElectronic density
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Dominating Clasp of the Financial Sector Revealed by Partial Correlation Analysis of the Stock Market

2010

What are the dominant stocks which drive the correlations present among stocks traded in a stock market? Can a correlation analysis provide an answer to this question? In the past, correlation based networks have been proposed as a tool to uncover the underlying backbone of the market. Correlation based networks represent the stocks and their relationships, which are then investigated using different network theory methodologies. Here we introduce a new concept to tackle the above question--the partial correlation network. Partial correlation is a measure of how the correlation between two variables, e.g., stock returns, is affected by a third variable. By using it we define a proxy of stoc…

INFORMATIONEconomicsPORTFOLIO OPTIMIZATIONEconomic Modelslcsh:MedicineNetwork theorySocial and Behavioral SciencesFinancial correlationStock exchangeMicroeconomicsEconometricsEconomicslcsh:ScienceMathematical ComputingMarketingMultidisciplinarySystems BiologyApplied MathematicsPhysicsStatisticsComplex SystemsMathematical EconomicsModels EconomicInterdisciplinary PhysicsAlgorithmsResearch ArticleCORRELATION-BASED NETWORKS; PORTFOLIO OPTIMIZATION; CORRELATION-MATRICES; TIME-SERIES; INFORMATIONNew YorkTIME-SERIESHumansInvestmentsStatistical MethodsCorrelation swapBiologyStructure of MarketsStock (geology)Partial correlationCORRELATION-BASED NETWORKSRegulatory NetworksModels Statisticallcsh:RFinancial marketComputational BiologyIndustrial OrganizationModels TheoreticalCORRELATION-MATRICESlcsh:QStock marketMathematicsForecasting
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Ceramic foam supported active materials for boron remediation in water

2015

Due to the narrowrange between boron necessities and toxicity in the environment, there is a high interest in the design of effective boron remediation procedures. We have previously reported a promising boron adsorptionmaterial based on the affinity of boron aqueous species for cis-diol groups that were anchored on differentmesoporous silica matrices.However, the small particle size of these systemsmakes themdifficult to be applied on real remediation situations. In this context we report herein a novel systemfor boron adsorption fromaqueous solutions inwhich the high boron affinity for functionalized mesoporousmaterials is combined with themechanical properties of ceramic foams as macrosc…

INGENIERIA DE LA CONSTRUCCIONMaterials scienceGeneral Chemical Engineeringchemistry.chemical_elementContext (language use)QUIMICA ORGANICAAdsorptionGeneral Materials ScienceCeramicBoronWater Science and TechnologyFunctionalized mesoporous adsorbentsCeramic foamAqueous solutionMechanical EngineeringQUIMICA INORGANICACeramic monoliths supported mesoporous adsorbentsGeneral ChemistryMesoporous silicaCeramic monoliths as supporting matricesBoron remediationchemistryChemical engineeringvisual_artvisual_art.visual_art_mediumMesoporous materialDesalination
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Post-Secular Identity? Developing a New Approach to Religion in International Relations and IR Studies

2021

In spite of the increasing presence of religion in international relations with various publications observing this presence and numerous authorities calling for the inclusion of religion into mainstream research, there is no universal consent to recognize religion’s role in IR. In our opinion, the only way to reconcile IR with the international reality in which religion has been and will remain present in the foreseeable future is for the researchers themselves to construct—especially those oriented towards broad, non-Western perspective—a new face of the discipline, the face which in this article we call the post-secular identity of IR study. Assuming that identity is first and foremost a…

International relationspost-secular identity of IR studiesphilosophy of science and IRReligions. Mythology. RationalismInclusion (disability rights)post-secularismSelfReligious studiesIdentity (social science)Face (sociological concept)RationalityBL1-2790secular-religious partnershipEpistemologyreligionMainstreamSociologyConstruct (philosophy)mediated hermeneutic matrices of religion and secularismIR/irreligion; IR/irReligions
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Evaluation de la concurrence généralisée : un outil matriciel

1993

Input-output matrices and structural analysis are applied to the analysis and forecast of consequences of offensive actions in the case of multiproduct multimarket large firms.

JEL : L - Industrial Organization/L.L1 - Market Structure Firm Strategy and Market Performance/L.L1.L13 - Oligopoly and Other Imperfect MarketsMatricesstructuralJEL: L - Industrial Organization/L.L1 - Market Structure Firm Strategy and Market Performance/L.L1.L13 - Oligopoly and Other Imperfect Marketsinput-outputconcurrence[ SHS.ECO ] Humanities and Social Sciences/Economies and financesstructure[SHS.ECO]Humanities and Social Sciences/Economics and Finance[SHS.ECO] Humanities and Social Sciences/Economics and Finance
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