Search results for "Matrix protein"

showing 10 items of 139 documents

Mutation of a critical tryptophan to lysine in avidin or streptavidin may explain why sea urchin fibropellin adopts an avidin-like domain

1999

Sea urchin fibropellins are epidermal growth factor homologues that harbor a C-terminal domain, similar in sequence to hen egg-white avidin and bacterial streptavidin. The fibropellin sequence was used as a conceptual template for mutation of designated conserved tryptophan residues in the biotin-binding sites of the tetrameric proteins, avidin and streptavidin. Three different mutations of avidin, Trp-110-Lys, Trp-70-Arg and the double mutant, were expressed in a baculovirus-infected insect cell system. A mutant of streptavidin, Trp-120-Lys, was similarly expressed. The homologous tryptophan to lysine (W--K) mutations of avidin and streptavidin were both capable of binding biotin and bioti…

StreptavidinBiotin bindingTime FactorsFunctional dimerLysineMutantBiophysicsBiotinEnzyme-Linked Immunosorbent AssayBiologyBiochemistrychemistry.chemical_compoundBiotinTetramerStructural BiologyGeneticsAnimalsMolecular BiologyExtracellular Matrix ProteinsBinding SitesEpidermal Growth FactorLysineAvidin-biotin technologyTemperatureTryptophanCell BiologyAvidinRecombinant ProteinsKineticsReversiblechemistryBiochemistryBiotinylationSea UrchinsMutationbiology.proteinRecombinant avidin and streptavidinStreptavidinBiotin-bindingAvidinChromatography LiquidProtein BindingFEBS Letters
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Poly(γ-Glutamic Acid) as an Exogenous Promoter of Chondrogenic Differentiation of Human Mesenchymal Stem/Stromal Cells

2015

Cartilage damage and/or aging effects can cause constant pain, which limits the patient's quality of life. Although different strategies have been proposed to enhance the limited regenerative capacity of cartilage tissue, the full production of native and functional cartilaginous extracellular matrix (ECM) has not yet been achieved. Poly(γ-glutamic acid) (γ-PGA), a naturally occurring polyamino acid, biodegradable into glutamate residues, has been explored for tissue regeneration. In this work, γ-PGA's ability to support the production of cartilaginous ECM by human bone marrow mesenchymal stem/stromal cells (MSCs) and nasal chondrocytes (NCs) was investigated. MSC and NC pellets were cultur…

Stromal cellBiomedical EngineeringType II collagenCell Culture TechniquesBioengineeringBiochemistryBiomaterialsExtracellular matrixTransforming Growth Factor beta1ChondrocytesNasal CartilagesmedicineHumansAggrecansAggrecanCells CulturedGlycosaminoglycansExtracellular Matrix ProteinsChemistryCartilageMesenchymal stem cellMesenchymal Stem CellsSOX9 Transcription FactorOriginal ArticlesChondrogenesisMolecular biologyCulture Mediamedicine.anatomical_structureBiochemistryPolyglutamic AcidCulture Media ConditionedCalciumCollagenStromal CellsChondrogenesisType I collagen
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Quantitation of antigen-reactive T cells in peripheral blood by IFNgamma-ELISPOT assay and chromium-release assay: a four-centre comparative trial

2000

The ELISPOT assay is increasingly being used for the monitoring of the induction of antigen-reactive T cells in cancer vaccination trials. In order to evaluate the reliability of T cell frequency analysis with the ELISPOT assay, a comparative study was performed in four European laboratories. Six samples from healthy subjects were analyzed for the frequency of influenza-reactive CD8+ T cells in peripheral blood mononuclear cells (PBMC) by IFNgamma-ELISPOT assay. In addition, one laboratory determined cytotoxic T cell precursor (CTL) frequencies in these samples by limiting dilution chromium-release assay (LDA), and three laboratories performed a variant of the LDA, the multiple microculture…

T cellImmunologyEpitopes T-LymphocyteIndicator Dilution TechniquesEnzyme-Linked Immunosorbent AssayCD8-Positive T-LymphocytesLymphocyte ActivationPeripheral blood mononuclear cellViral Matrix ProteinsInterferon-gammaAntigenHLA-A2 AntigenHumansImmunology and AllergyCytotoxic T cellMedicineAntigens ViralImmunodominant Epitopesbusiness.industryELISPOTMolecular biologyChromium RadioisotopesHIV Reverse TranscriptasePeptide FragmentsCTL*medicine.anatomical_structureImmunologyLeukocytes MononuclearCancer vaccinebusinessCD8T-Lymphocytes Cytotoxic
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Identification of T cell epitopes by the use of rapidly generated mRNA fragments.

2004

Abstract Although the number of defined T cell epitopes of clinically relevant antigens is constantly increasing, there is still an enormous need to identify further peptides, processed from new antigens or presented by rare HLA molecules, respectively. Here we introduce a novel two-step approach for the rapid identification of T cell epitopes. It was established in the CMV infection model. From the peripheral blood of healthy donors sharing HLA-A1 according to HLA serotyping we isolated CD8 + T lymphocytes and generated dendritic cells (DCs). DCs were electroporated with CMV pp65 mRNA and tested for recognition by autologous CD8 + T lymphocytes in IFN-γ ELISPOT assays. In all 10 CMV-seropo…

T cellImmunologyEpitopes T-LymphocyteStreptamerHuman leukocyte antigenBiologyCD8-Positive T-LymphocytesEpitopeViral Matrix ProteinsAntigenmedicineImmunology and AllergyCytotoxic T cellHumansRNA MessengerHLA-A1 AntigenAntigen PresentationELISPOTDendritic CellsPhosphoproteinsVirologyMolecular biologymedicine.anatomical_structurePeptidesCD8Epitope MappingJournal of immunological methods
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The use of clonal mRNA as an antigenic format for the detection of antigen-specific T lymphocytes in IFN-gamma ELISPOT assays.

2003

Abstract Most assay systems for the quantification of antigen-specific T-cell responses in infectious, malignant and autoimmune disease depend on the peptide antigen format and are therefore restricted to known epitopes and their presenting HLA molecules. Here we tested in ELISPOT assays the application of in vitro-transcribed clonal mRNA as an alternative antigen format covering all potential epitopes of a given antigen. As model antigens, we chose pp65 of human cytomegalovirus (HCMV) and human tyrosinase (hTyr). Antigen-presenting cells (APC) were K562 cells stably transfected with single HLA class I alleles and autologous dendritic cells (DC). As effectors, we applied in vitro-generated …

T-LymphocytesImmunologyAntigen-Presenting CellsEpitopes T-LymphocyteGenes MHC Class IHuman leukocyte antigenBiologyTransfectionEpitopeImmunoenzyme TechniquesViral Matrix ProteinsInterferon-gammaAntigenmedicineImmunology and AllergyHumansInterferon gammaRNA MessengerCloning MolecularMonophenol MonooxygenaseELISPOTTransfectionT lymphocyteDendritic CellsPhosphoproteinsVirologyMolecular biologyElectroporationK562 CellsCD8medicine.drugJournal of immunological methods
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The Effect of Long-Term Storage on the Biological and Histological Properties of Cryopreserved Amniotic Membrane

2011

Cryopreserved amniotic membrane (AM) is widely used in ophthalmology because of its anti-angiogenic, anti-inflammatory, and wound healing promoting capabilities. A common method to conserve the tissue is the storage in cryo-medium containing 50% glycerol at -80°C. The aim of this study was to examine the influence of storage time on the sterility as well as the histological and biological properties of cryopreserved AM.Amniotic membrane from different donors was stored in cell culture media containing 50% glycerol for different time periods, on average 4 months (group 1), 15 months (group 2), and 24 months (group 3), at -80°C. Samples of the tissue and cryo-medium were examined for bacteria…

Time FactorsSterilityBlotting WesternOrgan Preservation SolutionsMedizinTissue BanksBiologyCryopreservationAndrologyCellular and Molecular Neurosciencechemistry.chemical_compoundGlycerolHumansAmnionPolyacrylamide gel electrophoresisCryopreservationExtracellular Matrix ProteinsBacteriaBiological DressingsFungiOrgan PreservationSensory SystemsCulture MediaBlotOphthalmologyMembranechemistryTissue bankImmunologyCytokinesElectrophoresis Polyacrylamide GelWound healingBiomarkersCurrent Eye Research
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Impairing Otp homeodomain function in oral ectoderm cells affects skeletogenesis in sea urchin embryos

2003

AbstractIn the sea urchin embryo skeletogenesis is the result of a complex series of molecular and cellular events that coordinate the morphogenetic process. Past and recent evidence strongly indicate that skeletal initiation and growth are strictly dependent on signals emanating from the oral ectodermal wall. As previously suggested, Orthopedia (Otp), a homeodomain-containing transcription factor specifically expressed in a small subset of oral ectoderm cells, might be implicated in this signalling pathway. In this study, we utilize three different strategies to address the issue of whether Otp is an upstream regulator of sketelogenesis. We describe the effects of microinjection of Otp mor…

Transcriptional Activationanimal structuresMorpholinoOrthopedia homeoboxMolecular Sequence DataEctodermNerve Tissue ProteinsBiologyFusion geneEctodermmedicineSkeletogenesisAnimalsAmino Acid SequenceSea urchin embryoTranscription factorMolecular BiologyMessenger RNAExtracellular Matrix ProteinsBone DevelopmentEmbryoCell BiologyMolecular biologyHedgehog signaling pathwayMorpholino oligonucleotidesCytoskeletal Proteinsmedicine.anatomical_structureProtein BiosynthesisSea Urchinsembryonic structuresHomeoboxDevelopmental BiologyDevelopmental Biology
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Reconstruction of Peritoneal-like Structure in Three-Dimensional Collagen Gel Matrix Culture

1997

The peritoneum is a serous membrane consisting of different kinds of cells and extracellular matrix components (ECM). The aim of the present study was to develop a three-dimensional (3D) in vitro culture system for possible investigation of pathological conditions of the peritoneum. Human omental mesothelial cells (MC) and endothelial cells from the umbilical vein (EC) were cultivated either on (MC) or in (EC) a preformed type I collagen matrix. In 3D culture mesothelial cells showed their phenotypical in vivo characteristics and the synthesis of a new basal membrane (BM). Endothelial cells developed vessel-like structures, produce a BM and express E-selectin after TNF-alpha stimulation. Th…

Umbilical VeinsCell Culture TechniquesBiologyMatrix (biology)EpitheliumUmbilical veinExtracellular matrixPeritoneummedicineHumansEndotheliumExtracellular Matrix ProteinsSerous membraneEpithelial CellsCell BiologyCell biologyEndothelial stem cellMicroscopy Electronmedicine.anatomical_structureAdipose TissueImmunologyKeratinsCollagenPeritoneumGelsOmentumMesothelial CellType I collagenExperimental Cell Research
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Deep conservation of bivalve nacre proteins highlighted by shell matrix proteomics of the Unionoida Elliptio complanata and Villosa lienosa.

2016

The formation of the molluscan shell nacre is regulated to a large extent by a matrix of extracellular macromolecules that are secreted by the shell-forming tissue, the mantle. This so-called ‘calcifying matrix’ is a complex mixture of proteins, glycoproteins and polysaccharides that is assembled and occluded within the mineral phase during the calcification process. Better molecular-level characterization of the substances that regulate nacre formation is still required. Notable advances in expressed tag sequencing of freshwater mussels, such as Elliptio complanata and Villosa lienosa , provide a pre-requisite to further characterize bivalve nacre proteins by a proteomic approach. In this…

Unionidae0301 basic medicineUnionoida[ SDV.BA.ZI ] Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyVillosa lienosaBiomedical EngineeringBiophysicsLife Sciences–Earth Science interfaceBioengineeringBiologyProteomicsBiochemistrybivalveEvolution MolecularBiomaterials03 medical and health sciencesPaleontologyCalcification PhysiologicproteomicsAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]shell nacreShell matrixAnimalscalcium carbonate14. Life underwaterNacreMantle (mollusc)chemistry.chemical_classificationExtracellular Matrix ProteinsElliptiobiology.organism_classificationbiomineralization[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology030104 developmental biologyBiochemistrychemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]organic matrix proteinsGlycoproteinBiotechnologyBiomineralization
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Sec61alpha and TRAM are Sequentially Adjacent to a Nascent Viral Membrane Protein during its ER Integration

2007

Co-translational integration of a nascent viral membrane protein into the endoplasmic reticulum membrane takes place via the translocon. We have been studying the early stages of the integration of a double-spanning plant viral movement protein to gain insights into how viral membrane proteins are transferred from the hydrophilic interior of the translocon into the hydrophobic environment of the bilayer, where the transmembrane (TM) segments of the viral proteins can diffuse freely. Photocrosslinking experiments reveal that this integration involves the sequential passage of the TM segments past Sec61alpha and translocating chain-associating membrane protein (TRAM). Each TM segment is first…

Virus IntegrationBiologyEndoplasmic ReticulumModels BiologicalViral Matrix ProteinsDogsMembranes (Biologia)Structural BiologyAnimalsRNA MessengerMolecular BiologyVirus IntegrationMembrane GlycoproteinsViral matrix proteinEndoplasmic reticulumProteïnes de membranaMembrane ProteinsViral membraneTransloconTransmembrane proteinCell biologyPlant Viral Movement ProteinsCross-Linking ReagentsMembrane proteinBiochemistrySEC Translocation ChannelsSEC Translocation ChannelsMolecular Chaperones
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