Search results for "Matrix"

showing 10 items of 3205 documents

Structure and function of the vacuolar Ccc1/VIT1 family of iron transporters and its regulation in fungi

2020

Iron is an essential micronutrient for most living beings since it participates as a redox active cofactor in many biological processes including cellular respiration, lipid biosynthesis, DNA replication and repair, and ribosome biogenesis and recycling. However, when present in excess, iron can participate in Fenton reactions and generate reactive oxygen species that damage cells at the level of proteins, lipids and nucleic acids. Organisms have developed different molecular strategies to protect themselves against the harmful effects of high concentrations of iron. In the case of fungi and plants, detoxification mainly occurs by importing cytosolic iron into the vacuole through the Ccc1/V…

ISC Iron-sulfur lusterCS Consistency scoreCcc1Ribosome biogenesisVacuoleReview ArticleYRE Yap response elementsBiochemistryBiotecnologia0302 clinical medicineStructural BiologyCg Candida glabrata0303 health sciencesMAFFT Multiple Alignment using Fast Fourier TransformNRAMP Natural Resistance-Associated Macrophage ProteinbiologyVIT1ChemistryMBD Metal-binding domainPlantsComputer Science ApplicationsBiochemistry030220 oncology & carcinogenesisCRD Cysteine-rich domainEg Eucalyptus grandisIron detoxificationBiotechnologyCBC CCAAT-binding core complexlcsh:BiotechnologySaccharomyces cerevisiaeVTL Vacuolar iron transporter-likeBiophysicsVIT Vacuolar iron transporterbZIP basic leucine-zipper03 medical and health sciencesFongsLipid biosynthesislcsh:TP248.13-248.65GeneticsFe IronIron transportTranscription factor030304 developmental biologyComputingMethodologies_COMPUTERGRAPHICSBLOSUM BLOcks SUbstitution MatrixTMD Transmembrane domainML Maximum-likelihoodIron regulationDNA replicationFungibiology.organism_classificationYeastYeastMetabolic pathwayH HelixHap Heme activator proteinVacuoleROS Reactive oxygen speciesFerroComputational and Structural Biotechnology Journal
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Translocation of the nuclear autoantigen La to cell surface: assembly and disassembly with the extracellular matrix.

1991

La (SS-B) protein is known as one major antigenic target for autoantibodies from patients with certain autoimmune diseases such as Sjogren's syndrome or Lupus Erythematosus. La protein belongs to the so called "extractable nuclear antigens". Here we report that La antigen is not restricted to the nucleus as one might deduce from the exclusive nuclear staining pattern of patient anti-La antibodies but after stimulation of serum-starved cells with 10% fetal calf serum (FCS) appears and stays for at least 45 min at the outer surface of CV-1 cells being available for binding of anti-La antibodies. In addition we found that a minor part of La antigen associates with the extracellular fibronectin…

ImmunologyBiological Transport ActiveAutoimmunityBiologyIn Vitro TechniquesAutoantigensEpitopeExtracellular matrixEpitopesAntigenExtracellularImmunology and AllergyHumansNuclear proteinCells CulturedCell NucleusInflammationCell MembraneMolecular biologyExtracellular MatrixFibronectinBiochemistryMicroscopy FluorescenceRibonucleoproteinsCell cultureMercuric Chloridebiology.proteinElectrophoresis Polyacrylamide GelAntibodyAutoimmunity
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Inhibition of Transfer to Secondary Receptors by Heparan Sulfate-Binding Drug or Antibody Induces Noninfectious Uptake of Human Papillomavirus

2007

ABSTRACT Infection with various human papillomaviruses (HPVs) induces cervical cancers. Cell surface heparan sulfates (HS) have been shown to serve as primary attachment receptors, and molecules with structural similarity to cell surface HS, like heparin, function as competitive inhibitors of HPV infection. Here we demonstrate that the N , N ′-bisheteryl derivative of dispirotripiperazine, DSTP27, efficiently blocks papillomavirus infection by binding to HS moieties, with 50% inhibitory doses of up to 0.4 μg/ml. In contrast to short-term inhibitory effects of heparin, pretreatment of cells with DSTP27 significantly reduced HPV infection for more than 30 h. Using DSTP27 and heparinase, we fu…

ImmunologyEndocytosisBinding CompetitiveMicrobiologyAntibodiesCell LineExtracellular matrixLamininVirologyHumansReceptorPapillomaviridaeOxadiazolesHeparinasebiologyMolecular biologyEndocytosisVirus-Cell InteractionsPyrimidinesEndocytic vesicleCell cultureInsect Sciencebiology.proteinReceptors VirusHeparan sulfate bindingHeparitin SulfateHeparan Sulfate ProteoglycansJournal of Virology
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Serological identification of HSP105 as a novel non-Hodgkin lymphoma therapeutic target.

2011

Abstract We reported that the clinical efficacy of dendritic cell–based vaccination is strongly associated with immunologic responses in relapsed B-cell non-Hodgkin lymphoma (B-NHL) patients. We have now investigated whether postvaccination antibodies from responders recognize novel shared NHL-restricted antigens. Immunohistochemistry and flow cytometry showed that they cross-react with allogeneic B-NHLs at significantly higher levels than their matched prevaccination samples or nonresponders' antibodies. Western blot analysis of DOHH-2 lymphoma proteome revealed a sharp band migrating at approximately 100 to 110 kDa only with postvaccine repertoires from responders. Mass spectrometry ident…

ImmunologyMice SCIDBiochemistryAntibodiesFlow cytometryAntigen-Antibody ReactionsCohort StudiesHSP105MiceAntigenhemic and lymphatic diseasesCell Line TumormedicineAnimalsHumansSerologic TestsHSP110 Heat-Shock Proteinsmedicine.diagnostic_testbiologybusiness.industryLymphoma Non-HodgkinHSP105; non-Hodgkin lymphoma.Cell BiologyHematologyCell cyclemedicine.diseaseImmunohistochemistryLymphomaGranzyme BGene Expression Regulation Neoplasticnon-Hodgkin lymphoma.Spectrometry Mass Matrix-Assisted Laser Desorption-IonizationImmunologybiology.proteinImmunohistochemistryAntibodybusinessDiffuse large B-cell lymphoma
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Binding of extracellular matrix proteins to Aspergillus fumigatus conidia

1996

As detected by confocal immunofluorescence microscopy, binding of fibronectin and laminin appeared to be associated with the protrusions present on the outer cell wall layer of resting Aspergillus fumigatus conidia. Flow cytometry confirmed that binding of laminin to conidia was dose dependent and saturable. Laminin binding was virtually eliminated in trypsin-treated organisms, thus suggesting the protein nature of the binding site. Conidia were also able to specifically adhere to laminin immobilized on microtiter plates. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blotting (immunoblotting) with laminin and antilaminin antibody of whole conidial homogenates allowed…

ImmunologyMicrobiologyAspergillus fumigatusLamininCell AdhesionBinding siteCell adhesionLaminin bindingGel electrophoresischemistry.chemical_classificationExtracellular Matrix ProteinsMicroscopy ConfocalbiologyAspergillus fumigatusFlow Cytometrybiology.organism_classificationMolecular biologyFibronectinInfectious DiseasesBiochemistrychemistrybiology.proteinParasitologyGlycoproteinProtein BindingResearch ArticleInfection and Immunity
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Revisited BIA-MS combination: Entire "on-a-chip" processing leading to the proteins identification at low femtomole to sub-femtomole levels

2008

International audience; We present the results of a study in which biomolecular interaction analysis (BIA, Biacore 2000) was combined with mass spectrometry (MS) using entire "on-a-chip" procedure. Most BIA-MS studies included an elution step of the analyte prior MS analysis. Here, we report a low-cost approach combining Biacore analysis with homemade chips and MS in situ identification onto the chips without elution step. First experiments have been made with rat serum albumin to determine the sensitivity and validation of the concept has been obtained with an antibody/antigen couple. Our "on-a-chip" procedure allowed complete analysis by MS-MS of the biochip leading to protein identificat…

In situMALDI-TOFAnalyte[ SDV.BBM.BP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/BiophysicsBiomedical EngineeringBiophysicsAnalytical chemistrySPRBiosensing TechniquesMass spectrometry01 natural sciencesSensitivity and Specificity03 medical and health sciencesProtein Interaction MappingElectrochemistryNanotechnologyBIA-MSBiochipChromatography High Pressure Liquid030304 developmental biology0303 health sciencesChromatographyprotein complexesElutionChemistryMicrochemistry010401 analytical chemistryMs analysisReproducibility of ResultsGeneral MedicineEquipment DesignMicrofluidic Analytical Techniques0104 chemical sciencesEquipment Failure Analysis[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry Molecular Biology/BiophysicsMatrix-assisted laser desorption/ionizationSAMSpectrometry Mass Matrix-Assisted Laser Desorption-IonizationBiotechnology
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Improved Photocatalytic Activity of Polysiloxane TiO2 Composites by Thermally Induced Nanoparticle Bulk Clustering and Dye Adsorption

2021

Fine control of nanoparticle clustering within polymeric matrices can be tuned to enhance the physicochemical properties of the resulting composites, which are governed by the interplay of nanoparticle surface segregation and bulk clustering. To this aim, out-of-equilibrium strategies can be leveraged to program the multiscale organization of such systems. Here, we present experimental results indicating that bulk assembly of highly photoactive clusters of titanium dioxide nanoparticles within an in situ synthesized polysiloxane matrix can be thermally tuned. Remarkably, the controlled nanoparticle clustering results in improved degradation photocatalytic performances of the material under …

In situMaterials scienceNanoparticleSurfaces and InterfacesThermal treatmentCondensed Matter PhysicsMatrix (chemical analysis)chemistry.chemical_compoundchemistryCoating materials Oxides Composites Nanoparticles Cluster chemistryElectrochemistryPhotocatalysisDegradation (geology)Settore CHIM/01 - Chimica AnaliticaGeneral Materials ScienceComposite materialCluster analysisSpectroscopyMethylene blueSettore CHIM/02 - Chimica FisicaLangmuir
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Ultrastructure of the Interlamellar Membranes of the Nacre of the Bivalve Pteria hirundo, Determined by Immunolabelling.

2015

The current model for the ultrastructure of the interlamellar membranes of molluscan nacre imply that they consist of a core of aligned chitin fibers surrounded on both sides by acidic proteins. This model was based on observations taken on previously demineralized shells, where the original structure had disappeared. Despite other earlier claims, no direct observations exist in which the different components can be unequivocally discriminated. We have applied different labeling protocols on non-demineralized nacreous shells of the bivalve Pteria. With this method, we have revealed the disposition and nature of the different fibers of the interlamellar membranes that can be observed on the …

In situPlateletsBivalvesScanning electron microscopeShell (structure)Mineralogylcsh:MedicineChitinMatrix (biology)chemistry.chemical_compoundChitinAnimal ShellsMembrane proteinsAnimalsFiberlcsh:ScienceNacreFluorescence microscopyMultidisciplinaryMicroscopy Confocallcsh:RfungiProteasesMolluscs[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsBivalviaMembraneAragonitechemistryBiophysicsUltrastructureMicroscopy Electron Scanninglcsh:QResearch ArticlePloS one
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Preparation and evaluation of lauryl methacrylate monoliths with embedded silver nanoparticles for capillary electrochromatography

2012

In this article, capillary columns constituted by lauryl methacrylate monoliths with embedded silver nanoparticles (AgNPs) were developed and tested. Two incorporation approaches of AgNPs in monoliths were explored. The AgNPs were either photogenerated in situ during polymerization of the monolith by UV irradiation, or incorporated to the polymerization mixture (ex situ). The influence of the AgNP concentration on the morphological and chromatographic properties of the polymer matrix was investigated, and both the in situ and ex situ approaches were comparatively discussed. The morphology of the monoliths was characterized by electron microscopic techniques, and their electrochromatographic…

In situSilverUltraviolet RaysCapillary actionClinical BiochemistryMetal NanoparticlesTocopherolsBiochemistrySilver nanoparticleAnalytical ChemistryMatrix (chemical analysis)Capillary ElectrochromatographyPolycyclic Aromatic HydrocarbonsMonolithchemistry.chemical_classificationCapillary electrochromatographygeographygeography.geographical_feature_categoryChromatographyChemistryFatty AcidsReproducibility of ResultsEstersEquipment DesignPolymerSterolsPolymerizationChemical engineeringMicroscopy Electron ScanningMethacrylatesELECTROPHORESIS
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Intramitochondrial crystalloids in rat pinealocytes.

1982

In the present study the rare occurrence of intramitochondrial crystalloid inclusions in the rat pinealocytes is described. They lie within the mitochondrial matrix and consist of a lattice of moderately electron-dense lines. Intersections at regular intervals form rhomboid-like subunits. The significance of these inclusions is not known.

Inclusion BodiesMalemedicine.medical_specialtyHistologySubmitochondrial ParticlesRats Inbred StrainsCell BiologyMitochondrionBiologyPineal GlandInclusion bodiesPathology and Forensic MedicinePinealocyteMitochondriaRatsPineal glandMicroscopy ElectronEndocrinologymedicine.anatomical_structureMitochondrial matrixInternal medicinemedicineBiophysicsAnimalsCrystallizationCell and tissue research
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