Search results for "Microbial community"

Lien entre la diversité microbienne, la stabilité des communautés microbiennes et le turnover des matières organiques du sol

2014

Soil microbial communities act as important agents of the biological soil functioning, particularly through their involvements in the transformations of biogeochemical cycles (C, N, P…). In agro-ecosystems, the diversity of these communities is affected by perturbations associated to agricultural practices, and the significance of these modifications in terms of preservation of biological functioning and sustainability of agricultural systems has emerged as a central issue in the environmental sciences. Whereas the role of biodiversity has been well studied for macroorganisms, in particular for plants; the biodiversity/activity relationship is still largely unknown for soil microorganisms. …

Promenade among terrestrial denitrifiers: from genetics to ecology

2011

Insights into the unexplored diversity of the nitrous oxide reducing microbial community

2012

Nitrous oxide (N2O) is a major radiative forcing and stratospheric ozone depleting gas emitted from terrestrial and aquatic ecosystems. It can be transformed to N2 by bacteria and archaea harboring the nitrous oxide reductase (N2OR), which is the only known N2O sink in the biosphere. Despite its crucial role in mitigating N2O emissions, knowledge of the N2OR in the environment remains limited. Here, we report a comprehensive phylogenetic analysis of the nosZ gene coding the N2OR in genomes retrieved from public databases. The resulting phylogeny revealed two distinct clades of nosZ, with one unaccounted for in studies investigating N2O reducing communities. Examination of N2OR structural el…

Microbial-biogeography at the scale of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS)

2009

International audience

Microbial metacommunity: a METABAR coding approach

2017

Microbial metacommunity: a METABAR coding approach. 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens)

Predicting pesticide biodegradation potential from microbial community composition: new tools for bioremediation

2022

Bioaugmentation is receiving increasing attention as a green technology to treat contaminatedareas by inoculating specific biodegrading microorganisms. However, our understanding of therole of microbial community composition and structure in the expression of contaminantdegradation potential is yet to improve. It could help making wise choice for microorganisms –community or specific strain – to be inoculated in contaminated soils with consideration to theirindigeneous microbiota.Here we tried to predict the microbial degradation of two herbicides, glyphosate andisoproturon by means of penalized regression and machine learning methods routinely used ingenomic selection. To this end, we cond…

Original data for manuscript: Quantity and Quality of Aquaculture Enrichments Influence Disease Epidemics and Provide Ecological Alternatives to Anti…

2021

The data processed and analyzed in this study are given in a single file: Karvonen et al. exposure data.xlsx. For detailed description of the material, methods and results of the study, see the article.

Quantity and Quality of Aquaculture Enrichments Influence Disease Epidemics and Provide Ecological Alternatives to Antibiotics

2021

Environmental heterogeneity is a central component influencing the virulence and epidemiology of infectious diseases. The number and distribution of susceptible hosts determines disease transmission opportunities, shifting the epidemiological threshold between the spread and fadeout of a disease. Similarly, the presence and diversity of other hosts, pathogens and environmental microbes, may inhibit or accelerate an epidemic. This has important applied implications in farming environments, where high numbers of susceptible hosts are maintained in conditions of minimal environmental heterogeneity. We investigated how the quantity and quality of aquaculture enrichments (few vs. many stones

Meiofauna and benthic microbial biomass in a semi-enclosed mediterranean marine system (Stagnone di Marsala, Italy)

2004

Microbial and meiofaunal dynamics and their relationships with the biochemical composition of the sedimentary organic matter were investigated in a semi-enclosed marine system (Marsala lagoon, Western Sicily, Mediterranean Sea). Sediment samples were collected on a monthly basis from March 1996 to February 1997 in four stations located along a N–S transect characterized by different hydrodynamic regimes. Total sedimentary organic matter concentration ranged from 5.681.11 to 156.2812.63 mg g1, while the biopolymeric fraction of organic carbon (BPC, measured as sum of the lipids, carbohydrates and proteins) accounted for only a small fraction (24%) of total organic matter. Total meiofaunal de…

Enhanced nitrogen removal of low carbon wastewater in denitrification bioreactors by utilizing industrial waste toward circular economy

2020

Aquaculture needs practical solutions for nutrient removal to achieve sustainable fish production. Passive denitrifying bioreactors may provide an ecological, low-cost and low-maintenance approach for wastewater nitrogen removal. However, innovative organic materials are needed to enhance nitrate removal from the low carbon effluents in intensive recirculating aquaculture systems (RAS). In this study, we tested three additional carbon sources, including biochar, dried Sphagnum sp. moss and industrial potato residues, to enhance the performance of woodchip bioreactors treating the low carbon RAS wastewater. We assessed nitrate (NO3−) removal and microbial community composition during a one-y…