Search results for "Microorganisms."

Effect of pH and nitrite concentration on nitrite oxidation rate

2011

The effect of pH and nitrite concentration on the activity of the nitrite oxidizing bacteria (NOB) in an activated sludge reactor has been determined by means of laboratory batch experiments based on respirometric techniques. The bacterial activity was measured at different pH and at different total nitrite concentrations (TNO 2). The experimental results showed that the nitrite oxidation rate (NOR) depends on the TNO 2 concentration independently of the free nitrous acid (FNA) concentration, so FNA cannot be considered as the real substrate for NOB. NOB were strongly affected by low pH values (no activity was detected at pH 6.5) but no inhibition was observed at high pH values (activity wa…

A new tool to assess the ecotoxicological impact of β-triketone herbicides on soil microbial communities

2018

International audience; The β-triketone herbicides are post-emergence maize selective herbicides that have beenintroduced on the market, in replacement of atrazine, banned in Europe in 2004. Qualified as “eco-friendly”, since they are based on natural phytotoxin properties, these herbicides target an enzymeinvolved in carotenoid biosynthesis called 4-hydroxyphenylpyruvate dioxygenase (HPPD) encoded bythe hppd gene. The inhibition of this enzyme provokes bleaching symptoms, necrosis and death ofweeds.The hppd gene is not only find in eukaryotes such as plants, animals and humans but also inprokaryotes such as fungi, yeasts and bacteria. In recent studies, we showed that, within the soil bact…

THE FRENCH NATIONAL SOIL QUALITY MONITORING NETWORK (RMQS) AS A SUPPORT FOR MONITORING SOIL BIODIVERSITY: past, present and future programs

2021

Soil biodiversity would represent about 25% of the species on Earth. It is threatened, and although it is essential for human activities, it remains largely unknown. The French National Soil Quality Monitoring Network (RMQS) has a significant impact in removing the grey areas through its programs on soil microorganisms, soil meso and macrofauna, meadow flora, truffles and more recently enzymatic activities. The first distribution maps of bacterial phyla on a national scale and of soil fauna on a regional scale (in Brittany) have been developed. For the white truffle, three new areas of presence have been identified in France. The habitats of the bacteria were also described for the first ti…

DIAGSOL : development of a new functional marker of exposure to herbicides B-triketones in an agricultural soil

2020

Numerous herbicides target an enzyme found not only in weeds but also in « non-target organisms » such as microorganisms. This proof-of-concept study aims to use microbial gene encoding the targeted enzyme or the targeted enzyme itself as a marker for herbicide exposure in soils. The hppd gene and the encoded enzyme (HPPD; 4-hydroxyphenylpyruvate dioxygenase), targeted by B-triketone herbicides, are the subject of this study. In silico analyses reveal that the hppd gene is spread out in all bacterial phyla. Primers specific to this gene were designed. This primer pair is used to measure the abundance, the composition and the diversity of the hppd bacterial community in soil microcosms expos…

Costs-benfits trade-off in the intercation between Medicago truncatula and Pseudomonas fluorescens C7R12 across atmospheric carbon dioxide modulation

2011

The interactions between plants and soil microorganisms are mainly based on trophic relationships. The compounds exchanged represent cost for the organism produces them but a benefit for the one who receive those compounds. A mutualistic relation leads to stability in the cost-benefit balance resulting from a co-evolution between the two organisms. The cost corresponding for the release of carbon compounds by the plant would be offset by benefits in return corresponding for the activities of microorganisms that use them. We tested by an experimental way the effect of CO2 concentration on the interaction between M. truncatula and the bacterium P. fluorescens C7R12. The results allowed a best…

Molecular analyses of soil denitrifying bacteria

2006

ECOFUN-MICROBIODIV : an FP7 European project to estimate the ecotoxicological impact of low dose pesticide application in agriculture on soil functio…

2013

Soil is hosting a tremendous microbial diversity playing a key-role in a number of soil ecosystemic services including nutrient cycling and filtering. ln the European Soil Framework Directive pesticides are clearly marked as one of the major threats for soil biodiversity and functioning. ln orcier to guarantee minimum effects of pesticide application on soil microbes, pesticicleregistration at EU level (Regulation 2006/388) consiclers the toxicity of pesticides ontci non targefsoil microbes by relying on carbon- and nitrcigen-mineralization tests (OECO 216, 217). However tnese tests do not provicle a comprehensive assessment of pesticides onto soil microbes.-ECOFUN-MICROBIODIV was a project…

Diversity and complexity of microbial communities from a chlor-alkali tailings dump

2015

Abstract Revegetation of the tailings dumps produced by various industrial activities is necessary to prevent dust storms and erosion and represents a great challenge for ecological restoration. Little is known about the microbial colonisation and community structure of revegetated tailings following site exploitation. Here, we report the sequencing of 16S rRNA and internal transcribed spacer (ITS) fungal RNA gene amplicons from chlor-alkali residue and from an adjacent undisturbed soil to define the composition and assembly of the rhizosphere microbial communities. After quality filtering, a total of 72,373 and 89,929 bacterial sequences and 122,618 and 111,209 fungal sequences remained fo…

Impact of various factors on the diversity of soil microorganisms in agricultural and forest soils

2014

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Advanced Strategies for Food-Grade Protein Production: A New

2019

Food-grade production of recombinant proteins in Gram-positive bacteria, especially in LAB (i.e., Lactococcus, Lactobacillus, and Streptococcus), is of great interest in the areas of recombinant enzyme production, industrial food fermentation, gene and metabolic engineering, as well as antigen delivery for oral vaccination. Food-grade expression relies on hosts generally considered as safe organisms and on clone selection not dependent on antibiotic markers, which limit the overall DNA manipulation workflow, as it can be carried out only in the expression host and not in E. coli. Moreover, many commercial expression vectors lack useful elements for protein purification. We constructed a “sh…