Search results for "Microscopy"

showing 10 items of 3390 documents

Putative p24 complexes in Arabidopsis contain members of the delta and beta subfamilies and cycle in the early secretory pathway

2013

p24 proteins are a family of type I membrane proteins localized to compartments of the early secretory pathway and to coat protein I (COPI)- and COPII-coated vesicles. They can be classified, by sequence homology, into four subfamilies, named p24α, p24β, p24γ, and p24δ. In contrast to animals and fungi, plants contain only members of the p24β and p24δ subfamilies, the latter probably including two different subclasses. It has previously been shown that transiently expressed red fluorescent protein (RFP)-p24δ5 (p24δ1 subclass) localizes to the endoplasmic reticulum (ER) at steady state as a consequence of highly efficient COPI-based recycling from the Golgi apparatus. It is now shown that tr…

PhysiologyArabidopsisGolgi ApparatusPlant ScienceEndoplasmic ReticulumGreen fluorescent proteinsymbols.namesakeArabidopsisImmunoprecipitationER–Golgi transportcoat protein II (COPII)Secretory pathwayMicroscopy ConfocalSecretory PathwaybiologyArabidopsis ProteinsEndoplasmic reticulumcoat protein I (COPI)COPIImmunogold labellingGolgi apparatussecretory pathway.biology.organism_classificationImmunohistochemistryCell biologyMicroscopy Electronp24 proteinsMembrane proteinsymbolsResearch PaperPlasmidsJournal of Experimental Botany
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Proliferation-associated oxygen consumption and morphology of tumor cells in monolayer and spheroid culture.

1992

The oxygen consumption rate, proliferative activity, and morphology of EMT6/Ro mouse mammary sarcoma cells in monolayer and multicellular spheroid culture have been investigated in a comparative study. During the transition of monolayer cells from the exponential into the plateau growth phase, there is a distinct decrease in the cellular volume that is associated with a corresponding decrease in the proliferative and respiratory activity of the cells. The decline in cell volume is mainly due to a decrease in the content of cytoplasm, whereas the size of the nucleus is only slightly reduced. A concomitant decrease in the number of mitochondria per cell obviously accounts for the reduction in…

PhysiologyClinical BiochemistryCellchemistry.chemical_elementMammary Neoplasms AnimalBiologyOxygenMiceOxygen ConsumptionMonolayermedicineTumor Cells CulturedAnimalsCell growthSpheroidSarcomaCell BiologyAnatomyOxygenKineticsMicroscopy Electronmedicine.anatomical_structurechemistryCell cultureCytoplasmBiophysicsNucleusCell DivisionJournal of cellular physiology
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Dynamic deformation of migratory efferent lymph-derived cells ?trapped? in the inflammatory microcirculation

2002

The cellular immune response depends on the delivery of lymphocytes from the lymph node to the peripheral site of antigenic challenge. During their passage through the inflammatory microcirculaton, the migratory cells can become transiently immobilized or "trapped" in small caliber vessels. In this report, we used intravital microscopy and temporal area mapping to define the dynamic deformation of efferent lymph-derived mononuclear cells trapped in the systemic inflammatory microcirculation. Mononuclear cells obtained from the efferent lymph draining the oxazolone-stimulated microcirculation were labeled with fluorescent dye and reinjected into the feeding arterial circulation. Intravital v…

PhysiologyEfferentClinical BiochemistryCellFluorescent Antibody TechniquePeripheral blood mononuclear cellMonocytesMicrocirculationCell membraneAdjuvants ImmunologicmedicineAnimalsLymphocytesLymph nodeCell SizeInflammationSheepChemistryMicrocirculationCell MembraneOxazoloneCell BiologyAnatomyPeripheralChemotaxis Leukocytemedicine.anatomical_structureMicroscopy Electron ScanningBiophysicsLymph NodesIntravital microscopyJournal of Cellular Physiology
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The depletion of nuclear glutathione impairs cell proliferation in 3t3 fibroblasts.

2009

BACKGROUND:Glutathione is considered essential for survival in mammalian cells and yeast but not in prokaryotic cells. The presence of a nuclear pool of glutathione has been demonstrated but its role in cellular proliferation and differentiation is still a matter of debate. PRINCIPAL FINDINGS:We have studied proliferation of 3T3 fibroblasts for a period of 5 days. Cells were treated with two well known depleting agents, diethyl maleate (DEM) and buthionine sulfoximine (BSO), and the cellular and nuclear glutathione levels were assessed by analytical and confocal microscopic techniques, respectively. Both agents decreased total cellular glutathione although depletion by BSO was more sustaine…

PhysiologyGlutathione reductaseCell Biology/Cell Growth and Divisionlcsh:MedicineBiology3T3 cellschemistry.chemical_compoundMicemedicineBiochemistry/Cell Signaling and Trafficking StructuresAnimalsButhionine sulfoximinelcsh:ScienceTranscription factorButhionine SulfoximineCell ProliferationGlutathione TransferaseCell NucleusMultidisciplinaryMicroscopy ConfocalCell growthlcsh:RMaleatesGlutathione3T3 CellsFibroblastsMolecular biologyGlutathioneCell biologyCell nucleusmedicine.anatomical_structureGlutathione ReductasechemistryCytoplasmlcsh:QResearch ArticlePloS one
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Biosilicification of loricate choanoflagellate: organic composition of the nanotubular siliceous costal strips of Stephanoeca diplocostata.

2010

SUMMARY Loricate choanoflagellates (unicellular, eukaryotic flagellates; phylum Choanozoa) synthesize a basket-like siliceous lorica reinforced by costal strips (diameter of approximately 100 nm and length of 3 μm). In the present study, the composition of these siliceous costal strips is described, using Stephanoeca diplocostata as a model. Analyses by energy-dispersive X-ray spectroscopy (EDX), coupled with transmission electron microscopy (TEM), indicate that the costal strips comprise inorganic and organic components. The organic, proteinaceous scaffold contained one major polypeptide of mass 14 kDa that reacted with wheat germ agglutinin. Polyclonal antibodies were raised that allowed …

PhysiologyLoricate choanoflagellateBiosilicificationNanotechnologyStructural analysisOrganic compositionAquatic ScienceAlkaliesStephanoeca diplocostataHydrofluoric AcidBiosilicification; Loricate choanoflagellate; Organic composition; Structural analysisAnimalsChemical PrecipitationOrganic ChemicalsChoanoflagellateMolecular BiologyEcology Evolution Behavior and SystematicsChoanoflagellatabiologyChemistryAnimal StructuresProteinsSpectrometry X-Ray Emissionbiology.organism_classificationElementsSilicon DioxideImmunohistochemistryWheat germ agglutininNanostructuresSolutionsElectrophoresisTransmission electron microscopyInsect ScienceBiophysicsAnimal Science and ZoologyComposition (visual arts)Electrophoresis Polyacrylamide GelLorica (biology)ChoanozoaThe Journal of experimental biology
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Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.

2013

This work contributes to unraveling the role of the phosphorylated pathway of serine (Ser) biosynthesis in Arabidopsis (Arabidopsis thaliana) by functionally characterizing genes coding for the first enzyme of this pathway, 3-phosphoglycerate dehydrogenase (PGDH). We identified two Arabidopsis plastid-localized PGDH genes (3-PGDH and EMBRYO SAC DEVELOPMENT ARREST9 [EDA9]) with a high percentage of amino acid identity with a previously identified PGDH. All three genes displayed a different expression pattern indicating that they are not functionally redundant. pgdh and 3-pgdh mutants presented no drastic visual phenotypes, but eda9 displayed delayed embryo development, leading to aborted emb…

PhysiologyMutantMolecular Sequence DataArabidopsisPlant SciencePlant RootsGene Expression Regulation EnzymologicSerineBiochemistry and MetabolismGene Expression Regulation PlantComplementary DNAArabidopsisGeneticsSerineArabidopsis thalianaMetabolomicsAmino Acid SequencePlastidsPhosphorylationGenePhosphoglycerate DehydrogenasePhylogenyTapetumMicroscopy ConfocalbiologySequence Homology Amino AcidArabidopsis ProteinsReverse Transcriptase Polymerase Chain ReactionGenetic Complementation Testfood and beveragesPlant Components Aerialbiology.organism_classificationPlants Genetically ModifiedPhenotypeIsoenzymesBiochemistryMultigene FamilyMutationSeedsPollenPlant physiology
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Modification of Plasma Membrane Organization in Tobacco Cells Elicited by Cryptogein

2014

Abstract Lipid mixtures within artificial membranes undergo a separation into liquid-disordered and liquid-ordered phases. However, the existence of this segregation into microscopic liquid-ordered phases has been difficult to prove in living cells, and the precise organization of the plasma membrane into such phases has not been elucidated in plant cells. We developed a multispectral confocal microscopy approach to generate ratiometric images of the plasma membrane surface of Bright Yellow 2 tobacco (Nicotiana tabacum) suspension cells labeled with an environment sensitive fluorescent probe. This allowed the in vivo characterization of the global level of order of this membrane, by which w…

Physiology[SDV]Life Sciences [q-bio]BiophysicsContext (language use)Pyridinium CompoundsPlant ScienceBiologyArticleFungal ProteinsTobaccoGeneticsMembrane fluidity[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyFluorescent DyesPlasma membrane organizationChromatographyMicroscopy ConfocalPhotobleachingCell MembraneFluorescence recovery after photobleachingMembrane raftfood and beveragesPlant cellElicitorSterolsMembrane[SDE]Environmental SciencesBiophysicsFlagellinSignal Transduction
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Structural and functional analysis of integrin alpha2I domain interaction with echovirus 1.

2004

Integrins are cell surface receptors for several microbial pathogens including echovirus 1 (EV1), a picornavirus. Cryo-electron microscopy revealed that the functional domain (alpha(2)I) of human alpha(2)beta(1) integrin binds to a surface depression on the EV1 capsid. This three-dimensional structure of EV1 bound to alpha(2)I domain provides the first structural details of an integrin interacting with a picornavirus. The model indicates that alpha(2)beta(1) integrin cannot simultaneously bind both EV1 and the physiological ligand collagen. Compared with collagen binding to the alpha(2)I domain, the virus binds with a 10-fold higher affinity but in vitro uncoating of EV1 was not observed as…

PicornavirusProtein ConformationvirusesIntegrinIntegrin alpha2EndocytosisBiochemistryCD49c03 medical and health sciencesCapsidViral entryEnterovirus InfectionsHumansMolecular Biology030304 developmental biology0303 health sciencesbiology030302 biochemistry & molecular biologyCell MembraneCryoelectron MicroscopyCell BiologyLigand (biochemistry)biology.organism_classificationMolecular biologyEnterovirus B HumanIntegrin alpha Mbiology.proteinBiophysicsMicroscopy Electron ScanningReceptors VirusIntegrin beta 6The Journal of biological chemistry
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Real-time Fluorescence Measurement of Enterovirus Uncoating

2019

Viruses need to open, i.e., uncoat, in order to release their genomes for efficient replication and translation. Especially for non-enveloped viruses, such as enteroviruses, the cues leading to uncoating are less well known. The status of the virus has previously been observed mainly by transmission electron microscopy using negative staining, cryo electron microscopy, X-ray crystallography or gradient separation (reviewed in Tuthill et al., 2010, Myllynen et al., 2016, Ruokolainen et al., 2019). However, monitoring of uncoating has been limited by the lack of methods detecting dynamic changes of the virions. Here, we present a real-time fluorescence based protocol, which detects the viral …

PicornavirusRNase PCryo-electron microscopyStrategy and ManagementvirusesspektroskopiainfektiotIndustrial and Manufacturing EngineeringVirusMethods ArticletutkimusmenetelmätRNaseNucleic acid structuregenomeEnterovirusbiologyChemistryMechanical EngineeringSYBR Green IIVirus UncoatingPicornavirusMetals and AlloysfluoresenssiRNAfluorescence spectroscopybiology.organism_classificationNegative stainCell biologyenteroviruksetRNAuncoating
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Identification of plant cells in black pigments of prehistoric Spanish Levantine rock art by means of a multi-analytical approach. A new method for s…

2017

We present a new multi-analytical approach to the characterization of black pigments in Spanish Levantine rock art. This new protocol seeks to identify the raw materials that were used, as well as reconstruct the different technical gestures and decision-making processes involved in the obtaining of these black pigments. For the first of these goals, the pictorial mat- ter of the black figurative motifs documented at the Les Dogues rock art shelter (Ares del Maestre, Castello ́ n, Spain) was characterized through the combination of physicochemical and archeobotanical analyses. During the first stage of our research protocol, in situ and non- destructive analyses were carried out by means of…

Pigments[SHS.ARCHEO]Humanities and Social Sciences/Archaeology and PrehistoryRaw MaterialsMaterials Sciencelcsh:MedicineSocial SciencesPlant ScienceResearch and Analysis MethodsSpectrum Analysis RamanPlant TissuesPlant CellsPaintHumansPaleobotanyAnimal Anatomylcsh:ScienceColoring AgentsComputingMilieux_MISCELLANEOUSMaterials by AttributeFlowering PlantsChemical CharacterizationHistory AncientIsotope AnalysisArt prehistòricSocial IdentificationPlant Anatomylcsh:ROrganismsBiology and Life SciencesPaleontologySpectrometry X-Ray Emission[CHIM.MATE]Chemical Sciences/Material chemistryPigments BiologicalPlantsRadioactive Carbon DatingArchaeologySpainArchaeological DatingPhysical SciencesEarth SciencesMicroscopy Electron Scanninglcsh:QPaintingsPaleobiologyZoologyResearch ArticlePLoS ONE
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